Rmu_sc0005896.1_g000001

DOMON domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005896.1
OG0002816
Physical Location & Seq
Reverse (-)
2183 .. 3080
898 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 840 bp
atgggctacgtgagcgataaactggaactcaagggtatggtgggttcacaagccttggttgcttttcaaagaagcgatggaaccatggctgtttattcatcgcctataaaaaactacgacactcacttggagcaagggaacctctcctttcttgtctacaccttgtccgcggtttacgaaaacgatttcttcgttatctttgccaccctagggatcccaaacaatgttacaactgtgaatcaattatggcaacaaggacctctgcatggtaacacaccaggtatgcactcgatgtcaggccctaaccttaaatcctatggcaccttggattttctttcaggcaaagtcgtagcaaccggtacacatcactcttcggtatccaccatgaaaatcgcccatgggataatgaacaccattagttggggtatactcatgccaatcggagctatcgtggcttggaatttcaaagggtttggtccagcatggtcttgccaaattttgggttctcttggtggaattgctggctcggtcaccggactcatgctgggtcacaagtcttcagggatcgaatacaaaggttccttttgtggcctaaaaccggatcacaagtataggcggttctggaatttgttccactatgcccttggttacactgcaattgtcctgggcatagtaaacatcttcaacgggtttgatatattggaaccgccaaagtcgtggaggtgtgcctacatggggattctcactgcattgatgtttctcggtgtagtaggggaagccccactggaacaacaagaagactcaagctgcgaagacacaactggaacaaagggcggatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
ko04141 map04141
Pfam Domains
Protein Families
Cytochrom_B561 DUF568

Protein Analysis

279

Amino Acids

30.14

Weight (kDa)

6.74

Isoelectric Point (pI)

29.22

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF568 PF04526 13 - 111 2.4e-26 Protein of unknown function (DUF568)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 320
AccB7I CCANNNNNTGG 2 cut(s) 420, 499
AccI GTMKAC 2 cut(s) 156, 427
AccII CGCG 1 cut(s) 170
AciI CCGC 5 cut(s) 168, 170, 616, 707, 834
AclWI GGATC 4 cut(s) 208, 221, 572, 609
AcsI RAATTY 3 cut(s) 460, 495, 625
AcuI CTGAAG 1 cut(s) 543
AfaI GTAC 1 cut(s) 361
AfiI CCNNNNNNNGG 6 cut(s) 210, 266, 420, 499, 598, 735
AgeI ACCGGT 1 cut(s) 356
AgsI TTSAA 3 cut(s) 68, 466, 685
AjnI CCWGG 2 cut(s) 277, 663
AluBI AGCT 2 cut(s) 446, 807
AluI AGCT 2 cut(s) 446, 807
AlwI GGATC 4 cut(s) 208, 221, 572, 609
AoxI GGCC 2 cut(s) 298, 589
ApeKI GCWGC 1 cut(s) 807
ApoI RAATTY 3 cut(s) 460, 495, 625
AsiGI ACCGGT 1 cut(s) 356
Asp700I GAANNNNTTC 1 cut(s) 629
AspA2I CCTAGG 1 cut(s) 208
AspS9I GGNCC 3 cut(s) 257, 299, 476
AsuHPI GGTGA 1 cut(s) 523
AvaII GGWCC 2 cut(s) 257, 476
AvrII CCTAGG 1 cut(s) 208
BamHI GGATCC 1 cut(s) 213
BanI GGYRCC 1 cut(s) 320
BbsI GAAGAC 3 cut(s) 549, 804, 819
BbvI GCAGC 1 cut(s) 794
BccI CCATC 1 cut(s) 71
BciT130I CCWGG 2 cut(s) 279, 665
BciVI GTATCC 1 cut(s) 388
BfaI CTAG 1 cut(s) 209
BfuI GTATCC 1 cut(s) 388
BisI GCNGC 1 cut(s) 808
BlnI CCTAGG 1 cut(s) 208
BlsI GCNGC 1 cut(s) 809
Bme1390I CCNGG 2 cut(s) 279, 665
Bme18I GGWCC 2 cut(s) 257, 476
BmgT120I GGNCC 3 cut(s) 257, 299, 476
BmiI GGNNCC 6 cut(s) 82, 140, 215, 322, 580, 705
BmrFI CCNGG 2 cut(s) 279, 665
BpiI GAAGAC 3 cut(s) 549, 804, 819
BpuEI CTTGAG 2 cut(s) 14, 787
BsaAI YACGTR 1 cut(s) 10
BsaJI CCNNGG 8 cut(s) 54, 84, 168, 208, 324, 397, 643, 664
BsaWI WCCGGW 3 cut(s) 356, 533, 598
BsaXI ACNNNNNCTCC 2 cut(s) 435, 465
Bsc4I CCNNNNNNNGG 6 cut(s) 210, 266, 420, 499, 598, 735
Bse118I RCCGGY 1 cut(s) 356
Bse1I ACTGG 3 cut(s) 27, 789, 826
BseBI CCWGG 2 cut(s) 279, 665
BseDI CCNNGG 8 cut(s) 54, 84, 168, 208, 324, 397, 643, 664
BseLI CCNNNNNNNGG 6 cut(s) 210, 266, 420, 499, 598, 735
BseNI ACTGG 3 cut(s) 27, 789, 826
BseXI GCAGC 1 cut(s) 794
BseYI CCCAGC 1 cut(s) 544
Bsh1236I CGCG 1 cut(s) 170
BshFI GGCC 2 cut(s) 300, 591
BshNI GGYRCC 1 cut(s) 320
BshTI ACCGGT 1 cut(s) 356
BsiSI CCGG 3 cut(s) 357, 534, 599
BslI CCNNNNNNNGG 6 cut(s) 210, 266, 420, 499, 598, 735
BsnI GGCC 2 cut(s) 300, 591
Bsp143I GATC 3 cut(s) 213, 564, 601
Bsp19I CCATGG 2 cut(s) 84, 397
BspACI CCGC 5 cut(s) 168, 170, 616, 707, 834
BspANI GGCC 2 cut(s) 300, 591
BspFNI CGCG 1 cut(s) 170
BspLI GGNNCC 6 cut(s) 82, 140, 215, 322, 580, 705
BspPI GGATC 4 cut(s) 208, 221, 572, 609
BspT107I GGYRCC 1 cut(s) 320
BsrFI RCCGGY 1 cut(s) 356
BsrI ACTGG 3 cut(s) 27, 789, 826
BssAI RCCGGY 1 cut(s) 356
BssECI CCNNGG 8 cut(s) 54, 84, 168, 208, 324, 397, 643, 664
BssMI GATC 3 cut(s) 213, 564, 601
BssNAI GTATAC 1 cut(s) 428
BssT1I CCWWGG 6 cut(s) 54, 84, 208, 324, 397, 643
Bst1107I GTATAC 1 cut(s) 428
Bst2UI CCWGG 2 cut(s) 279, 665
Bst4CI ACNGT 1 cut(s) 235
Bst6I CTCTTC 1 cut(s) 376
BstBAI YACGTR 1 cut(s) 10
BstC8I GCNNGC 1 cut(s) 523
BstDSI CCRYGG 3 cut(s) 84, 168, 397
BstEII GGTNACC 1 cut(s) 529
BstFNI CGCG 1 cut(s) 170
BstKTI GATC 3 cut(s) 216, 567, 604
BstMBI GATC 3 cut(s) 213, 564, 601
BstMWI GCNNNNNNNGC 3 cut(s) 12, 59, 452
BstNI CCWGG 2 cut(s) 279, 665
BstPI GGTNACC 1 cut(s) 529
BstSCI CCNGG 2 cut(s) 277, 663
BstUI CGCG 1 cut(s) 170
BstV1I GCAGC 1 cut(s) 794
BstV2I GAAGAC 3 cut(s) 549, 804, 819
BstX2I RGATCY 1 cut(s) 213
BstXI CCANNNNNNTGG 1 cut(s) 717
BstYI RGATCY 1 cut(s) 213
BstZ17I GTATAC 1 cut(s) 428
BsuI GTATCC 1 cut(s) 388
BsuRI GGCC 2 cut(s) 300, 591
BtgI CCRYGG 3 cut(s) 84, 168, 397
BtgZI GCGATG 2 cut(s) 84, 90
BtsI GCAGTG 2 cut(s) 651, 744
BtsIMutI CAGTG 3 cut(s) 651, 744, 782
Cac8I GCNNGC 1 cut(s) 523
Cfr10I RCCGGY 1 cut(s) 356
Cfr13I GGNCC 3 cut(s) 257, 299, 476
Cfr42I CCGCGG 1 cut(s) 171
CsiI ACCWGGT 1 cut(s) 277
Csp6I GTAC 1 cut(s) 360
CspAI ACCGGT 1 cut(s) 356
CviAII CATG 8 cut(s) 85, 266, 385, 398, 433, 483, 541, 733
CviQI GTAC 1 cut(s) 360
DpnI GATC 3 cut(s) 215, 566, 603
DpnII GATC 3 cut(s) 213, 564, 601
Eam1104I CTCTTC 1 cut(s) 376
EarI CTCTTC 1 cut(s) 376
Eco130I CCWWGG 6 cut(s) 54, 84, 208, 324, 397, 643
Eco47I GGWCC 2 cut(s) 257, 476
Eco57I CTGAAG 1 cut(s) 543
Eco91I GGTNACC 1 cut(s) 529
EcoO109I RGGNCCY 2 cut(s) 257, 299
EcoO65I GGTNACC 1 cut(s) 529
EcoRII CCWGG 2 cut(s) 277, 663
EcoT14I CCWWGG 6 cut(s) 54, 84, 208, 324, 397, 643
ErhI CCWWGG 6 cut(s) 54, 84, 208, 324, 397, 643
FaeI CATG 8 cut(s) 88, 269, 388, 401, 436, 486, 544, 736
FatI CATG 8 cut(s) 84, 265, 384, 397, 432, 482, 540, 732
FblI GTMKAC 2 cut(s) 156, 427
Fnu4HI GCNGC 1 cut(s) 808
Fsp4HI GCNGC 1 cut(s) 808
FspBI CTAG 1 cut(s) 209
GluI GCNGC 1 cut(s) 808
GsaI CCCAGC 1 cut(s) 548
HaeIII GGCC 2 cut(s) 300, 591
HapII CCGG 3 cut(s) 357, 534, 599
Hin1II CATG 8 cut(s) 88, 269, 388, 401, 436, 486, 544, 736
HinfI GANTC 4 cut(s) 238, 537, 739, 800
HpaII CCGG 3 cut(s) 357, 534, 599
HphI GGTGA 1 cut(s) 523
Hpy166II GTNNAC 6 cut(s) 47, 157, 175, 362, 428, 676
Hpy188I TCNGA 1 cut(s) 443
Hpy188III TCNNGA 1 cut(s) 622
Hpy8I GTNNAC 6 cut(s) 47, 157, 175, 362, 428, 676
HpyCH4III ACNGT 1 cut(s) 235
HpyCH4IV ACGT 1 cut(s) 9
HpyCH4V TGCA 4 cut(s) 265, 286, 656, 749
HpyF10VI GCNNNNNNNGC 3 cut(s) 12, 59, 452
HpySE526I ACGT 1 cut(s) 9
Hsp92II CATG 8 cut(s) 88, 269, 388, 401, 436, 486, 544, 736
KspI CCGCGG 1 cut(s) 171
Kzo9I GATC 3 cut(s) 213, 564, 601
LmnI GCTCC 2 cut(s) 130, 443
Lsp1109I GCAGC 1 cut(s) 794
MabI ACCWGGT 1 cut(s) 277
MaeI CTAG 1 cut(s) 209
MaeII ACGT 1 cut(s) 9
MaeIII GTNAC 5 cut(s) 226, 269, 529, 548, 647
MalI GATC 3 cut(s) 215, 566, 603
MboI GATC 3 cut(s) 213, 564, 601
MboII GAAGA 6 cut(s) 181, 363, 549, 673, 809, 824
MfeI CAATTG 1 cut(s) 657
MflI RGATCY 1 cut(s) 213
MluCI AATT 6 cut(s) 242, 460, 495, 516, 625, 657
MlyI GAGTC 2 cut(s) 531, 794
MnlI CCTC 3 cut(s) 152, 270, 714
MroXI GAANNNNTTC 1 cut(s) 629
MseI TTAA 1 cut(s) 309
MspA1I CMGCKG 1 cut(s) 170
MspI CCGG 3 cut(s) 357, 534, 599
MspR9I CCNGG 2 cut(s) 279, 665
MunI CAATTG 1 cut(s) 657
MvaI CCWGG 2 cut(s) 279, 665
MvnI CGCG 1 cut(s) 170
MwoI GCNNNNNNNGC 3 cut(s) 12, 59, 452
NcoI CCATGG 2 cut(s) 84, 397
NdeII GATC 3 cut(s) 213, 564, 601
NlaIII CATG 8 cut(s) 88, 269, 388, 401, 436, 486, 544, 736
NlaIV GGNNCC 6 cut(s) 82, 140, 215, 322, 580, 705
NmuCI GTSAC 2 cut(s) 529, 548
PcsI WCGNNNNNNNCGW 2 cut(s) 189, 447
PdmI GAANNNNTTC 1 cut(s) 629
PfeI GAWTC 2 cut(s) 238, 739
PflMI CCANNNNNTGG 2 cut(s) 420, 499
PinAI ACCGGT 1 cut(s) 356
PkrI GCNGC 1 cut(s) 809
PleI GAGTC 2 cut(s) 531, 794
PpsI GAGTC 2 cut(s) 531, 794
Ppu21I YACGTR 1 cut(s) 10
PpuMI RGGWCCY 1 cut(s) 257
Psp5II RGGWCCY 1 cut(s) 257
Psp6I CCWGG 2 cut(s) 277, 663
PspEI GGTNACC 1 cut(s) 529
PspFI CCCAGC 1 cut(s) 544
PspGI CCWGG 2 cut(s) 277, 663
PspN4I GGNNCC 6 cut(s) 82, 140, 215, 322, 580, 705
PspPI GGNCC 3 cut(s) 257, 299, 476
PspPPI RGGWCCY 1 cut(s) 257
PsrI GAACNNNNNNTAC 4 cut(s) 28, 60, 602, 634
PsuI RGATCY 1 cut(s) 213
RsaI GTAC 1 cut(s) 361
RsaNI GTAC 1 cut(s) 360
SacII CCGCGG 1 cut(s) 171
SaqAI TTAA 1 cut(s) 309
SatI GCNGC 1 cut(s) 808
Sau3AI GATC 3 cut(s) 213, 564, 601
Sau96I GGNCC 3 cut(s) 257, 299, 476
SchI GAGTC 2 cut(s) 531, 794
ScrFI CCNGG 2 cut(s) 279, 665
SexAI ACCWGGT 1 cut(s) 277
Sfr303I CCGCGG 1 cut(s) 171
SgrBI CCGCGG 1 cut(s) 171
SinI GGWCC 2 cut(s) 257, 476
SmlI CTYRAG 2 cut(s) 29, 802
SmoI CTYRAG 2 cut(s) 29, 802
Sse9I AATT 6 cut(s) 242, 460, 495, 516, 625, 657
SsiI CCGC 5 cut(s) 168, 170, 616, 707, 834
SspMI CTAG 1 cut(s) 209
StyD4I CCNGG 2 cut(s) 277, 663
StyI CCWWGG 6 cut(s) 54, 84, 208, 324, 397, 643
TaaI ACNGT 1 cut(s) 235
TaiI ACGT 1 cut(s) 12
TaqI TCGA 2 cut(s) 290, 567
TaqII GACCGA 1 cut(s) 517
TasI AATT 6 cut(s) 242, 460, 495, 516, 625, 657
TfiI GAWTC 2 cut(s) 238, 739
Tru1I TTAA 1 cut(s) 309
Tru9I TTAA 1 cut(s) 309
TscAI CASTG 3 cut(s) 658, 751, 789
TseFI GTSAC 2 cut(s) 529, 548
TseI GCWGC 1 cut(s) 807
Tsp45I GTSAC 2 cut(s) 529, 548
TspDTI ATGAA 3 cut(s) 87, 401, 422
TspRI CASTG 3 cut(s) 658, 751, 789
Van91I CCANNNNNTGG 2 cut(s) 420, 499
VpaK11BI GGWCC 2 cut(s) 257, 476
XapI RAATTY 3 cut(s) 460, 495, 625
XcmI CCANNNNNNNNNTGG 1 cut(s) 641
XmaJI CCTAGG 1 cut(s) 208
XmiI GTMKAC 2 cut(s) 156, 427
XmnI GAANNNNTTC 1 cut(s) 629
XspI CTAG 1 cut(s) 209
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.