Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006428.1

Orthogroup ID

OG0001950

Physical Location & Seq

Genomic Coordinates Reverse (-)

16725 .. 19053

Gene Structure 2329 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

atgctccggctccgatgcctccttctctgcctcactatccacttcgccgcggttgccgctgcgttcttcaagccgttcaacgtcagctacgaccaccgcgccctcatcatcgatggcaaccgccggatgctcatctccgccggcatccactaccctcgcgccactccccagatgtggcctgatttgattgcaaagagcaaggaaggcggggcggatgtgatccagacctatgcattttggagcggccacgagccgcagagaggacagtactattttgaagggagatatgatatcgtcaagtttgtgaagttagtgggagctagtggactctatctccatcttcgcatagggccttacgtctgcgctgagtggaactttggtggcttcccggtgtggttgcgggacatacctggaatagaattccgaacaaacaatgcaccttttaaggaagagatgcagcggtttgttaaaaagatggtggatctgatgcaagaggaagagctgttttgttggcaaggtggtccagtaattatgctacaggttgtaagcatactttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004553 GO:0004565 GO:0005575 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005774 GO:0009505 GO:0015925 GO:0016020 GO:0016787 GO:0016798 GO:0030312 GO:0031090 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0071944 GO:0098588 GO:0098805

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Gal_Lectin Glyco_hydro_35

Protein Analysis

185

Amino Acids

21.32

Weight (kDa)

8.68

Isoelectric Point (pI)

41.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro_35	PF01301	35 - 181	2.8e-63	Glycosyl hydrolases family 35

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001950)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G13750
fragaria_vesca	FvH4_6g33260 FvH4_6g33260 FvH4_6g33260 FvH4_6g33260 FvH4_6g33260
malus_domestica	MD03G1276100.v1.1 MD05G1210900.v1.1 MD09G1193900.v1.1 MD11G1104200.v1.1 MD11G1105200.v1.1 MD15G1317000.v1.1 MD16G1228200.v1.1
prunus_persica	Prupe.3G050200_v2.0.a1
pyrus_communis	pycom09g11040 pycom111g03560 pycom15g12320
rosa_chinensis	RchiOBHm_Chr0c25g0500881 RchiOBHm_Chr1g0331081 RchiOBHm_Chr2g0142961 RchiOBHm_Chr6g0257481 RchiOBHm_Chr6g0266311
rosa_laevigata	RLG00000020004
rosa_multiflora	Rmu_sc0006428.1_g000002 Rmu_sc0008528.1_g000001 Rmu_sc0028483.1_g000003
rosa_roxburghii	Rroxscaffold_1G00030970 Rroxscaffold_2G00102180 Rroxscaffold_7G00183160 Rroxscaffold_7G00216290
rosa_rugosa	Rorug02G0377400
rosa_samantha	Rh2AG100700 Rh2AG430500 Rh2BG138700 Rh2BG439500 Rh2CG416200 Rh2DG449500 Rh4CG196100 Rh5DG216000 Rh6AG145200 Rh6AG372600 Rh6AG422200 Rh6DG373500
rosa_wichuraiana	Rw2G035160 Rw5G019430

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccBSI	CCGCTC	1 cut(s)	243
AccII	CGCG	3 cut(s)	50, 99, 159
AclWI	GGATC	2 cut(s)	214, 489
AcoI	YGGCCR	1 cut(s)	244
AcsI	RAATTY	1 cut(s)	419
AfaI	GTAC	1 cut(s)	269
AfiI	CCNNNNNNNGG	2 cut(s)	174, 260
AgsI	TTSAA	3 cut(s)	70, 79, 278
AjnI	CCWGG	1 cut(s)	409
AluBI	AGCT	3 cut(s)	87, 320, 502
AluI	AGCT	3 cut(s)	87, 320, 502
AlwI	GGATC	2 cut(s)	214, 489
AoxI	GGCC	3 cut(s)	176, 244, 350
ApeKI	GCWGC	2 cut(s)	59, 457
ApoI	RAATTY	1 cut(s)	419
AspLEI	GCGC	3 cut(s)	101, 161, 365
AspS9I	GGNCC	2 cut(s)	350, 521
AsuC2I	CCSGG	1 cut(s)	389
AvaII	GGWCC	1 cut(s)	521
BauI	CACGAG	1 cut(s)	248
BbvI	GCAGC	2 cut(s)	46, 469
BccI	CCATC	3 cut(s)	107, 345, 469
BceAI	ACGGC	1 cut(s)	58
BciT130I	CCWGG	1 cut(s)	411
BcnI	CCSGG	1 cut(s)	389
BfaI	CTAG	1 cut(s)	321
BfmI	CTRYAG	1 cut(s)	536
BisI	GCNGC	6 cut(s)	48, 57, 60, 244, 254, 458
BlsI	GCNGC	6 cut(s)	49, 58, 61, 245, 255, 459
BmcAI	AGTACT	1 cut(s)	269
Bme1390I	CCNGG	2 cut(s)	389, 411
Bme18I	GGWCC	1 cut(s)	521
BmgT120I	GGNCC	2 cut(s)	350, 521
BmiI	GGNNCC	1 cut(s)	11
BmrFI	CCNGG	2 cut(s)	389, 411
BmsI	GCATC	5 cut(s)	5, 117, 153, 444, 477
BpuMI	CCSGG	1 cut(s)	389
Bsa29I	ATCGAT	1 cut(s)	111
BsaBI	GATNNNNATC	1 cut(s)	131
BsaJI	CCNNGG	1 cut(s)	48
BsaXI	ACNNNNNCTCC	2 cut(s)	318, 348
Bsc4I	CCNNNNNNNGG	2 cut(s)	174, 260
Bse118I	RCCGGY	1 cut(s)	140
Bse1I	ACTGG	1 cut(s)	524
Bse8I	GATNNNNATC	1 cut(s)	131
BseBI	CCWGG	1 cut(s)	411
BseCI	ATCGAT	1 cut(s)	111
BseDI	CCNNGG	1 cut(s)	48
BseGI	GGATG	3 cut(s)	132, 144, 220
BseJI	GATNNNNATC	1 cut(s)	131
BseLI	CCNNNNNNNGG	2 cut(s)	174, 260
BseMII	CTCAG	1 cut(s)	357
BseNI	ACTGG	1 cut(s)	524
BseXI	GCAGC	2 cut(s)	46, 469
Bsh1236I	CGCG	3 cut(s)	50, 99, 159
BshFI	GGCC	3 cut(s)	178, 246, 352
BshVI	ATCGAT	1 cut(s)	111
BsiSI	CCGG	4 cut(s)	7, 124, 141, 389
BslFI	GGGAC	1 cut(s)	416
BslI	CCNNNNNNNGG	2 cut(s)	174, 260
BsmFI	GGGAC	1 cut(s)	416
BsnI	GGCC	3 cut(s)	178, 246, 352
Bsp143I	GATC	2 cut(s)	219, 481
BspANI	GGCC	3 cut(s)	178, 246, 352
BspCNI	CTCAG	1 cut(s)	358
BspDI	ATCGAT	1 cut(s)	111
BspFNI	CGCG	3 cut(s)	50, 99, 159
BspLI	GGNNCC	1 cut(s)	11
BspPI	GGATC	2 cut(s)	214, 489
BspQI	GCTCTTC	1 cut(s)	492
BsrBI	CCGCTC	1 cut(s)	243
BsrFI	RCCGGY	1 cut(s)	140
BsrI	ACTGG	1 cut(s)	524
BssAI	RCCGGY	1 cut(s)	140
BssECI	CCNNGG	1 cut(s)	48
BssMI	GATC	2 cut(s)	219, 481
BssSI	CACGAG	1 cut(s)	248
Bst2BI	CACGAG	1 cut(s)	248
Bst2UI	CCWGG	1 cut(s)	411
Bst4CI	ACNGT	1 cut(s)	267
Bst6I	CTCTTC	2 cut(s)	444, 492
BstC8I	GCNNGC	1 cut(s)	142
BstDEI	CTNAG	1 cut(s)	366
BstDSI	CCRYGG	1 cut(s)	48
BstF5I	GGATG	3 cut(s)	132, 144, 220
BstFNI	CGCG	3 cut(s)	50, 99, 159
BstHHI	GCGC	3 cut(s)	101, 161, 365
BstKTI	GATC	2 cut(s)	222, 484
BstMBI	GATC	2 cut(s)	219, 481
BstMWI	GCNNNNNNNGC	3 cut(s)	53, 56, 204
BstNI	CCWGG	1 cut(s)	411
BstSCI	CCNGG	2 cut(s)	387, 409
BstSFI	CTRYAG	1 cut(s)	536
BstUI	CGCG	3 cut(s)	50, 99, 159
BstV1I	GCAGC	2 cut(s)	46, 469
BstX2I	RGATCY	1 cut(s)	481
BstYI	RGATCY	1 cut(s)	481
Bsu15I	ATCGAT	1 cut(s)	111
BsuRI	GGCC	3 cut(s)	178, 246, 352
BsuTUI	ATCGAT	1 cut(s)	111
BtgI	CCRYGG	1 cut(s)	48
BtsCI	GGATG	3 cut(s)	132, 144, 220
Cac8I	GCNNGC	1 cut(s)	142
CfoI	GCGC	3 cut(s)	101, 161, 365
Cfr10I	RCCGGY	1 cut(s)	140
Cfr13I	GGNCC	2 cut(s)	350, 521
Cfr42I	CCGCGG	1 cut(s)	51
ClaI	ATCGAT	1 cut(s)	111
Csp6I	GTAC	1 cut(s)	268
CviQI	GTAC	1 cut(s)	268
DdeI	CTNAG	1 cut(s)	366
DpnI	GATC	2 cut(s)	221, 483
DpnII	GATC	2 cut(s)	219, 481
EaeI	YGGCCR	1 cut(s)	244
Eam1104I	CTCTTC	2 cut(s)	444, 492
EarI	CTCTTC	2 cut(s)	444, 492
EciI	GGCGGA	2 cut(s)	127, 227
Eco32I	GATATC	1 cut(s)	292
Eco47I	GGWCC	1 cut(s)	521
EcoO109I	RGGNCCY	1 cut(s)	350
EcoRI	GAATTC	1 cut(s)	419
EcoRII	CCWGG	1 cut(s)	409
EcoRV	GATATC	1 cut(s)	292
EcoT22I	ATGCAT	1 cut(s)	235
FaiI	YATR	6 cut(s)	231, 288, 347, 407, 533, 551
FaqI	GGGAC	1 cut(s)	416
FauI	CCCGC	2 cut(s)	200, 393
Fnu4HI	GCNGC	6 cut(s)	48, 57, 60, 244, 254, 458
FokI	GGATG	3 cut(s)	131, 139, 227
Fsp4HI	GCNGC	6 cut(s)	48, 57, 60, 244, 254, 458
FspBI	CTAG	1 cut(s)	321
GlaI	GCGC	3 cut(s)	100, 160, 364
GluI	GCNGC	6 cut(s)	48, 57, 60, 244, 254, 458
HaeIII	GGCC	3 cut(s)	178, 246, 352
HapII	CCGG	4 cut(s)	7, 124, 141, 389
HhaI	GCGC	3 cut(s)	101, 161, 365
Hin6I	GCGC	3 cut(s)	99, 159, 363
HinP1I	GCGC	3 cut(s)	99, 159, 363
HinfI	GANTC	1 cut(s)	327
HpaII	CCGG	4 cut(s)	7, 124, 141, 389
Hpy166II	GTNNAC	1 cut(s)	326
Hpy188I	TCNGA	3 cut(s)	14, 425, 486
Hpy188III	TCNNGA	1 cut(s)	223
Hpy8I	GTNNAC	1 cut(s)	326
HpyAV	CCTTC	3 cut(s)	32, 197, 272
HpyCH4III	ACNGT	1 cut(s)	267
HpyCH4IV	ACGT	2 cut(s)	81, 357
HpyCH4V	TGCA	5 cut(s)	191, 233, 437, 457, 490
HpyF10VI	GCNNNNNNNGC	3 cut(s)	53, 56, 204
HpyF3I	CTNAG	1 cut(s)	366
HpySE526I	ACGT	2 cut(s)	81, 357
HspAI	GCGC	3 cut(s)	99, 159, 363
KroI	GCCGGC	1 cut(s)	140
KroNI	GCCGGC	1 cut(s)	142
KspI	CCGCGG	1 cut(s)	51
Kzo9I	GATC	2 cut(s)	219, 481
LguI	GCTCTTC	1 cut(s)	492
LmnI	GCTCC	4 cut(s)	9, 15, 240, 317
Lsp1109I	GCAGC	2 cut(s)	46, 469
LweI	GCATC	5 cut(s)	5, 117, 153, 444, 477
MaeI	CTAG	1 cut(s)	321
MaeII	ACGT	2 cut(s)	81, 357
MalI	GATC	2 cut(s)	221, 483
MbiI	CCGCTC	1 cut(s)	243
MboI	GATC	2 cut(s)	219, 481
MboII	GAAGA	4 cut(s)	58, 332, 461, 509
MflI	RGATCY	1 cut(s)	481
MluCI	AATT	2 cut(s)	419, 528
MlyI	GAGTC	1 cut(s)	321
MnlI	CCTC	6 cut(s)	29, 41, 113, 165, 254, 487
Mph1103I	ATGCAT	1 cut(s)	235
MroNI	GCCGGC	1 cut(s)	140
MseI	TTAA	2 cut(s)	444, 468
MspA1I	CMGCKG	3 cut(s)	50, 59, 460
MspI	CCGG	4 cut(s)	7, 124, 141, 389
MspR9I	CCNGG	2 cut(s)	389, 411
MvaI	CCWGG	1 cut(s)	411
MvnI	CGCG	3 cut(s)	50, 99, 159
MwoI	GCNNNNNNNGC	3 cut(s)	53, 56, 204
NaeI	GCCGGC	1 cut(s)	142
NciI	CCSGG	1 cut(s)	389
NdeII	GATC	2 cut(s)	219, 481
NgoMIV	GCCGGC	1 cut(s)	140
NlaIV	GGNNCC	1 cut(s)	11
NsiI	ATGCAT	1 cut(s)	235
PciSI	GCTCTTC	1 cut(s)	492
PcsI	WCGNNNNNNNCGW	1 cut(s)	87
PdiI	GCCGGC	1 cut(s)	142
PkrI	GCNGC	6 cut(s)	49, 58, 61, 245, 255, 459
PleI	GAGTC	1 cut(s)	321
PpsI	GAGTC	1 cut(s)	321
Psp6I	CCWGG	1 cut(s)	409
PspGI	CCWGG	1 cut(s)	409
PspN4I	GGNNCC	1 cut(s)	11
PspPI	GGNCC	2 cut(s)	350, 521
PsuI	RGATCY	1 cut(s)	481
RsaI	GTAC	1 cut(s)	269
RsaNI	GTAC	1 cut(s)	268
SacII	CCGCGG	1 cut(s)	51
SapI	GCTCTTC	1 cut(s)	492
SaqAI	TTAA	2 cut(s)	444, 468
SatI	GCNGC	6 cut(s)	48, 57, 60, 244, 254, 458
Sau3AI	GATC	2 cut(s)	219, 481
Sau96I	GGNCC	2 cut(s)	350, 521
ScaI	AGTACT	1 cut(s)	269
SchI	GAGTC	1 cut(s)	321
ScrFI	CCNGG	2 cut(s)	389, 411
SfaNI	GCATC	5 cut(s)	5, 117, 153, 444, 477
SfcI	CTRYAG	1 cut(s)	536
Sfr303I	CCGCGG	1 cut(s)	51
SgrBI	CCGCGG	1 cut(s)	51
SinI	GGWCC	1 cut(s)	521
Sse9I	AATT	2 cut(s)	419, 528
SspMI	CTAG	1 cut(s)	321
StyD4I	CCNGG	2 cut(s)	387, 409
TaaI	ACNGT	1 cut(s)	267
TaiI	ACGT	2 cut(s)	84, 360
TaqI	TCGA	1 cut(s)	111
TasI	AATT	2 cut(s)	419, 528
TatI	WGTACW	1 cut(s)	267
TauI	GCSGC	4 cut(s)	50, 59, 246, 256
Tru1I	TTAA	2 cut(s)	444, 468
Tru9I	TTAA	2 cut(s)	444, 468
TseI	GCWGC	2 cut(s)	59, 457
VpaK11BI	GGWCC	1 cut(s)	521
XapI	RAATTY	1 cut(s)	419
XspI	CTAG	1 cut(s)	321
ZrmI	AGTACT	1 cut(s)	269
Zsp2I	ATGCAT	1 cut(s)	235

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.