Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_ssc0000111.1

Orthogroup ID

OG0002305

Physical Location & Seq

Genomic Coordinates Reverse (-)

31792 .. 34485

Gene Structure 2694 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

atgggcccaagtttggcctctcggtatcatcaggctgcgatggcgttcttgagtaaatttggcaatatacttaggcagaccgcaaccaggcagatcagatctgaattggctccttccaagccgtcgatttttcaggcgataagatgcatgtcaactgggccaagttctaaactatttattggaggtgtgtcatttcagagtgatgagcaaagtttgagggaagaatttgccaaatatggtgaagttgttgatgtaagaatcatcacagaccgtgacactggtagatcgagaggctttggattcgttacttacacttctagcgaggaggcatcaagtgccatccaggccttggatggtcaggagcttcatggccgccgcgtaagggtgaattatgctactgataggcctcggactaactttggaggaggtggttatggtggtgatggtggttacccgagaggtggtggaggatatggtggtggtggtggtggttatggaggtggcggttatggaggtggcagctacggttctgggaactctggtggtggatacggtggaagtggagttggctacaacagtgggggcacttttgataatgctagcactggtggttttggtggtactgacaacagcttttccactggtggagttcaatttggagaggacaaaagtggcttcgatgagccattagaaggaaacaatagggatgatgatgacactgcagacttcgaaaaaagggcctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000166 GO:0000959 GO:0003674 GO:0003676 GO:0003677 GO:0003697 GO:0003723 GO:0005488 GO:0005507 GO:0005524 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006139 GO:0006725 GO:0006807 GO:0006950 GO:0008144 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009451 GO:0009628 GO:0009987 GO:0016070 GO:0016071 GO:0016553 GO:0016554 GO:0016556 GO:0017076 GO:0030554 GO:0032553 GO:0032555 GO:0032559 GO:0034641 GO:0035639 GO:0036094 GO:0043167 GO:0043168 GO:0043169 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0046872 GO:0046914 GO:0050896 GO:0071704 GO:0080156 GO:0090304 GO:0097159 GO:0097367 GO:1900864 GO:1901265 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

ko03040 map03040

Pfam Domains

Protein Families

RRM_1

Protein Analysis

247

Amino Acids

25.54

Weight (kDa)

5.3

Isoelectric Point (pI)

45.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RRM_1	PF00076	58 - 128	7.9e-22	RNA recognition motif

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002305)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G13850 AT4G13850 AT4G13850 AT4G13850 AT5G61030 AT5G61030
fragaria_vesca	FvH4_5g13810 FvH4_5g13820 FvH4_5g13820
malus_domestica	MD01G1142900.v1.1 MD06G1225200.v1.1 MD14G1212100.v1.1
prunus_persica	Prupe.1G476800_v2.0.a1 Prupe.5G205300_v2.0.a1
pyrus_communis	pycom06g17970 pycom14g17570
rosa_chinensis	RchiOBHm_Chr7g0183111 RchiOBHm_Chr7g0183131
rosa_laevigata	RLG00000005076 RLG00000031728
rosa_multiflora	Rmu_ssc0000111.1_g000008 Rmu_ssc0000111.1_g000010
rosa_roxburghii	Rroxscaffold_3G00270730 Rroxscaffold_3G00270750
rosa_rugosa	Rorug06G0453200 Rorug06G0453300 Rorug06G0453300 Rorug06G0453400 Rorug06G0453500 Rorug06G0453600 Rorug06G0453700
rosa_samantha	Rh7AG056200 Rh7AG056400 Rh7BG055500 Rh7BG055700 Rh7CG057000 Rh7CG057100 Rh7DG055700 Rh7DG055900 Rh7DG056000
rosa_wichuraiana	Rw7G004580 Rw7G004600

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	349
AccII	CGCG	1 cut(s)	378
AciI	CCGC	4 cut(s)	81, 373, 376, 504
AcoI	YGGCCR	1 cut(s)	370
AcsI	RAATTY	2 cut(s)	56, 224
AfaI	GTAC	1 cut(s)	622
AfiI	CCNNNNNNNGG	6 cut(s)	13, 87, 349, 382, 461, 692
AgsI	TTSAA	1 cut(s)	653
AjnI	CCWGG	2 cut(s)	86, 342
AluBI	AGCT	3 cut(s)	364, 522, 633
AluI	AGCT	3 cut(s)	364, 522, 633
Ama87I	CYCGRG	1 cut(s)	454
AoxI	GGCC	7 cut(s)	4, 15, 158, 345, 370, 404, 738
ApaI	GGGCCC	1 cut(s)	8
ApeKI	GCWGC	2 cut(s)	35, 519
ApoI	RAATTY	2 cut(s)	56, 224
AspS9I	GGNCC	4 cut(s)	4, 5, 158, 738
AsuHPI	GGTGA	3 cut(s)	251, 397, 452
AsuII	TTCGAA	1 cut(s)	729
AsuNHI	GCTAGC	1 cut(s)	599
AvaI	CYCGRG	1 cut(s)	454
BaeGI	GKGCMC	2 cut(s)	8, 587
BanII	GRGCYC	1 cut(s)	8
BbvI	GCAGC	2 cut(s)	22, 531
BccI	CCATC	4 cut(s)	34, 347, 347, 437
BceAI	ACGGC	1 cut(s)	106
BciT130I	CCWGG	2 cut(s)	88, 344
BciVI	GTATCC	1 cut(s)	542
BfaI	CTAG	2 cut(s)	318, 600
BfmI	CTRYAG	1 cut(s)	720
BfuI	GTATCC	1 cut(s)	542
BglI	GCCNNNNNGGC	1 cut(s)	344
BglII	AGATCT	1 cut(s)	98
BisI	GCNGC	4 cut(s)	36, 373, 376, 520
BlsI	GCNGC	4 cut(s)	37, 374, 377, 521
Bme1390I	CCNGG	2 cut(s)	88, 344
BmeT110I	CYCGRG	1 cut(s)	454
BmgT120I	GGNCC	4 cut(s)	4, 5, 158, 738
BmiI	GGNNCC	2 cut(s)	6, 111
BmrFI	CCNGG	2 cut(s)	88, 344
BmrI	ACTGGG	1 cut(s)	165
BmsI	GCATC	2 cut(s)	134, 338
BmtI	GCTAGC	1 cut(s)	603
BmuI	ACTGGG	1 cut(s)	165
Bpu14I	TTCGAA	1 cut(s)	729
BpuEI	CTTGAG	1 cut(s)	70
BsaJI	CCNNGG	2 cut(s)	348, 407
Bsc4I	CCNNNNNNNGG	6 cut(s)	13, 87, 349, 382, 461, 692
Bse1I	ACTGG	4 cut(s)	160, 283, 610, 646
BseBI	CCWGG	2 cut(s)	88, 344
BseDI	CCNNGG	2 cut(s)	348, 407
BseGI	GGATG	3 cut(s)	339, 358, 712
BseLI	CCNNNNNNNGG	6 cut(s)	13, 87, 349, 382, 461, 692
BseNI	ACTGG	4 cut(s)	160, 283, 610, 646
BseRI	GAGGAG	2 cut(s)	338, 438
BseSI	GKGCMC	2 cut(s)	8, 587
BseXI	GCAGC	2 cut(s)	22, 531
Bsh1236I	CGCG	1 cut(s)	378
BshFI	GGCC	7 cut(s)	6, 17, 160, 347, 372, 406, 740
BsiHKCI	CYCGRG	1 cut(s)	454
BslI	CCNNNNNNNGG	6 cut(s)	13, 87, 349, 382, 461, 692
BsnI	GGCC	7 cut(s)	6, 17, 160, 347, 372, 406, 740
BsoBI	CYCGRG	1 cut(s)	454
Bsp119I	TTCGAA	1 cut(s)	729
Bsp120I	GGGCCC	1 cut(s)	4
Bsp1286I	GDGCHC	2 cut(s)	8, 587
Bsp143I	GATC	3 cut(s)	93, 98, 284
BspACI	CCGC	4 cut(s)	81, 373, 376, 504
BspANI	GGCC	7 cut(s)	6, 17, 160, 347, 372, 406, 740
BspFNI	CGCG	1 cut(s)	378
BspLI	GGNNCC	2 cut(s)	6, 111
BspMAI	CTGCAG	1 cut(s)	724
BspOI	GCTAGC	1 cut(s)	603
BspT104I	TTCGAA	1 cut(s)	729
BsrI	ACTGG	4 cut(s)	160, 283, 610, 646
BssECI	CCNNGG	2 cut(s)	348, 407
BssMI	GATC	3 cut(s)	93, 98, 284
BssT1I	CCWWGG	1 cut(s)	348
Bst2UI	CCWGG	2 cut(s)	88, 344
Bst4CI	ACNGT	4 cut(s)	272, 527, 554, 578
BstAPI	GCANNNNNTGC	1 cut(s)	335
BstBI	TTCGAA	1 cut(s)	729
BstC8I	GCNNGC	1 cut(s)	601
BstDEI	CTNAG	1 cut(s)	71
BstEII	GGTNACC	1 cut(s)	449
BstF5I	GGATG	3 cut(s)	339, 358, 712
BstFNI	CGCG	1 cut(s)	378
BstKTI	GATC	3 cut(s)	96, 101, 287
BstMBI	GATC	3 cut(s)	93, 98, 284
BstMWI	GCNNNNNNNGC	3 cut(s)	41, 335, 344
BstNI	CCWGG	2 cut(s)	88, 344
BstNSI	RCATGY	1 cut(s)	151
BstPI	GGTNACC	1 cut(s)	449
BstSCI	CCNGG	2 cut(s)	86, 342
BstSFI	CTRYAG	1 cut(s)	720
BstSLI	GKGCMC	2 cut(s)	8, 587
BstUI	CGCG	1 cut(s)	378
BstV1I	GCAGC	2 cut(s)	22, 531
BstX2I	RGATCY	1 cut(s)	98
BstYI	RGATCY	1 cut(s)	98
BsuI	GTATCC	1 cut(s)	542
BsuRI	GGCC	7 cut(s)	6, 17, 160, 347, 372, 406, 740
BtgZI	GCGATG	1 cut(s)	53
BtsCI	GGATG	3 cut(s)	339, 358, 712
BtsI	GCAGTG	1 cut(s)	717
BtsIMutI	CAGTG	5 cut(s)	276, 583, 603, 639, 717
Cac8I	GCNNGC	1 cut(s)	601
Cfr13I	GGNCC	4 cut(s)	4, 5, 158, 738
Csp6I	GTAC	1 cut(s)	621
CviAII	CATG	2 cut(s)	148, 368
CviQI	GTAC	1 cut(s)	621
DdeI	CTNAG	1 cut(s)	71
DpnI	GATC	3 cut(s)	95, 100, 286
DpnII	GATC	3 cut(s)	93, 98, 284
EaeI	YGGCCR	1 cut(s)	370
Eco130I	CCWWGG	1 cut(s)	348
Eco147I	AGGCCT	2 cut(s)	347, 406
Eco24I	GRGCYC	1 cut(s)	8
Eco88I	CYCGRG	1 cut(s)	454
Eco91I	GGTNACC	1 cut(s)	449
EcoO109I	RGGNCCY	1 cut(s)	738
EcoO65I	GGTNACC	1 cut(s)	449
EcoRII	CCWGG	2 cut(s)	86, 342
EcoT14I	CCWWGG	1 cut(s)	348
EcoT22I	ATGCAT	1 cut(s)	149
EcoT38I	GRGCYC	1 cut(s)	8
ErhI	CCWWGG	1 cut(s)	348
FaeI	CATG	2 cut(s)	151, 371
FaiI	YATR	9 cut(s)	68, 149, 237, 369, 393, 435, 474, 495, 510
FatI	CATG	2 cut(s)	147, 367
Fnu4HI	GCNGC	4 cut(s)	36, 373, 376, 520
FokI	GGATG	3 cut(s)	326, 365, 719
FriOI	GRGCYC	1 cut(s)	8
Fsp4HI	GCNGC	4 cut(s)	36, 373, 376, 520
FspBI	CTAG	2 cut(s)	318, 600
GluI	GCNGC	4 cut(s)	36, 373, 376, 520
HaeIII	GGCC	7 cut(s)	6, 17, 160, 347, 372, 406, 740
Hin1II	CATG	2 cut(s)	151, 371
HincII	GTYRAC	1 cut(s)	153
HindII	GTYRAC	1 cut(s)	153
HinfI	GANTC	2 cut(s)	258, 300
HphI	GGTGA	3 cut(s)	251, 397, 452
Hpy166II	GTNNAC	1 cut(s)	153
Hpy188I	TCNGA	4 cut(s)	98, 103, 198, 411
Hpy188III	TCNNGA	3 cut(s)	49, 288, 359
Hpy8I	GTNNAC	1 cut(s)	153
Hpy99I	CGWCG	1 cut(s)	127
HpyAV	CCTTC	2 cut(s)	123, 686
HpyCH4III	ACNGT	4 cut(s)	272, 527, 554, 578
HpyCH4V	TGCA	2 cut(s)	147, 722
HpyF10VI	GCNNNNNNNGC	3 cut(s)	41, 335, 344
HpyF3I	CTNAG	1 cut(s)	71
Hsp92II	CATG	2 cut(s)	151, 371
Kzo9I	GATC	3 cut(s)	93, 98, 284
LmnI	GCTCC	2 cut(s)	115, 361
Lsp1109I	GCAGC	2 cut(s)	22, 531
LweI	GCATC	2 cut(s)	134, 338
MaeI	CTAG	2 cut(s)	318, 600
MaeIII	GTNAC	3 cut(s)	272, 304, 449
MalI	GATC	3 cut(s)	95, 100, 286
MboI	GATC	3 cut(s)	93, 98, 284
MboII	GAAGA	1 cut(s)	233
MflI	RGATCY	1 cut(s)	98
MhlI	GDGCHC	2 cut(s)	8, 587
MluCI	AATT	5 cut(s)	56, 104, 224, 388, 653
Mph1103I	ATGCAT	1 cut(s)	149
MspR9I	CCNGG	2 cut(s)	88, 344
MvaI	CCWGG	2 cut(s)	88, 344
MvnI	CGCG	1 cut(s)	378
MwoI	GCNNNNNNNGC	3 cut(s)	41, 335, 344
NdeII	GATC	3 cut(s)	93, 98, 284
NheI	GCTAGC	1 cut(s)	599
NlaIII	CATG	2 cut(s)	151, 371
NlaIV	GGNNCC	2 cut(s)	6, 111
NmuCI	GTSAC	1 cut(s)	272
NsiI	ATGCAT	1 cut(s)	149
NspI	RCATGY	1 cut(s)	151
NspV	TTCGAA	1 cut(s)	729
PceI	AGGCCT	2 cut(s)	347, 406
PfeI	GAWTC	2 cut(s)	258, 300
PflMI	CCANNNNNTGG	1 cut(s)	349
PkrI	GCNGC	4 cut(s)	37, 374, 377, 521
Psp6I	CCWGG	2 cut(s)	86, 342
PspEI	GGTNACC	1 cut(s)	449
PspGI	CCWGG	2 cut(s)	86, 342
PspN4I	GGNNCC	2 cut(s)	6, 111
PspOMI	GGGCCC	1 cut(s)	4
PspPI	GGNCC	4 cut(s)	4, 5, 158, 738
PstI	CTGCAG	1 cut(s)	724
PsuI	RGATCY	1 cut(s)	98
RsaI	GTAC	1 cut(s)	622
RsaNI	GTAC	1 cut(s)	621
SatI	GCNGC	4 cut(s)	36, 373, 376, 520
Sau3AI	GATC	3 cut(s)	93, 98, 284
Sau96I	GGNCC	4 cut(s)	4, 5, 158, 738
ScrFI	CCNGG	2 cut(s)	88, 344
SduI	GDGCHC	2 cut(s)	8, 587
SetI	ASST	8 cut(s)	187, 366, 430, 463, 502, 517, 524, 635
SfaNI	GCATC	2 cut(s)	134, 338
SfcI	CTRYAG	1 cut(s)	720
SfuI	TTCGAA	1 cut(s)	729
SmlI	CTYRAG	1 cut(s)	49
SmoI	CTYRAG	1 cut(s)	49
Sse9I	AATT	5 cut(s)	56, 104, 224, 388, 653
SseBI	AGGCCT	2 cut(s)	347, 406
SsiI	CCGC	4 cut(s)	81, 373, 376, 504
SspMI	CTAG	2 cut(s)	318, 600
StuI	AGGCCT	2 cut(s)	347, 406
StyD4I	CCNGG	2 cut(s)	86, 342
StyI	CCWWGG	1 cut(s)	348
TaaI	ACNGT	4 cut(s)	272, 527, 554, 578
TaqI	TCGA	4 cut(s)	125, 287, 678, 729
TasI	AATT	5 cut(s)	56, 104, 224, 388, 653
TauI	GCSGC	2 cut(s)	375, 378
TfiI	GAWTC	2 cut(s)	258, 300
TscAI	CASTG	5 cut(s)	283, 583, 610, 646, 724
TseFI	GTSAC	1 cut(s)	272
TseI	GCWGC	2 cut(s)	35, 519
Tsp45I	GTSAC	1 cut(s)	272
TspDTI	ATGAA	1 cut(s)	356
TspRI	CASTG	5 cut(s)	283, 583, 610, 646, 724
Van91I	CCANNNNNTGG	1 cut(s)	349
XapI	RAATTY	2 cut(s)	56, 224
XceI	RCATGY	1 cut(s)	151
XcmI	CCANNNNNNNNNTGG	2 cut(s)	346, 350
XspI	CTAG	2 cut(s)	318, 600
Zsp2I	ATGCAT	1 cut(s)	149

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.