AT1G01730

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001501
Physical Location & Seq
Forward (+)
270797 .. 272189
1393 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G01730.1

Sequence Viewer

Length: 675 bp
ATGGAGAAATCGACCTCTCCGGCGACTCGAGTCACCGAACCTCCTCCTGCTGCTACTTCATCTCTTCCAGCACAAGCTCCTCCGCTTCCTACATCTGCAGATCAGAGATCAGCTGAGTTACCTTCGCCTGCTCAGCCAGCTCAGATGACTGCGCCTCCGTCGACAGTTACCACAGATCCGTCGTCCAGGGGAAGAAAGCGAGCGCTGGAAGCGAATCTTCAGATCGAGAGCTCCAACTACTACAAGATGCGTCTCCTTGTCAAAGATCTTCGCCCTCACGTTCTCGAGGTTTTACGAACTCCAGACTTGAGGAACTCTAAGGCAGTTATCGAGATTCAAGAGAAGATGAAGCTTATGCTTCAACTGTACGAAGAGATGATTGGAGAGTCTCCCAAACGTGAGAAAACAGCTAAGAGCGACTCTTTATCCAACGGAAAGGCGACTACTACTACTACTACTACTACTAGTGTACTGAGATCATCTGAAACTGAGAAGCACAGCTCTGATGGAGATGGCGACAAGGTGGTTGGAGGGTCGGCATTTGGCTGGAACTTCATAACCTCTGGAGGGCCAGGCACTGAACCTGTTTATTCTGGAATGTCAAAGGAAGAATACAGAAGCTCTCACCCAATTATGCAAGTGGAGGCAGAGCTTGAGTTGCCCAACACATTCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

224

Amino Acids

24.31

Weight (kDa)

6.0

Isoelectric Point (pI)

71.07

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 161
AciI CCGC 1 cut(s) 83
AclWI GGATC 1 cut(s) 170
AcuI CTGAAG 1 cut(s) 203
AfaI GTAC 2 cut(s) 368, 471
AfeI AGCGCT 1 cut(s) 204
AfiI CCNNNNNNNGG 1 cut(s) 567
AgsI TTSAA 2 cut(s) 338, 362
AhlI ACTAGT 1 cut(s) 464
AjnI CCWGG 2 cut(s) 185, 571
AjuI GAANNNNNNNTTGG 2 cut(s) 363, 395
AluBI AGCT 9 cut(s) 77, 113, 140, 231, 352, 410, 501, 621, 652
AluI AGCT 9 cut(s) 77, 113, 140, 231, 352, 410, 501, 621, 652
Alw21I GWGCWC 1 cut(s) 233
Alw26I GTCTC 2 cut(s) 257, 393
AlwI GGATC 1 cut(s) 170
AlwNI CAGNNNCTG 1 cut(s) 578
Ama87I CYCGRG 2 cut(s) 27, 284
Aor51HI AGCGCT 1 cut(s) 204
AoxI GGCC 1 cut(s) 569
ApeKI GCWGC 1 cut(s) 50
AspLEI GCGC 2 cut(s) 154, 205
AspS9I GGNCC 1 cut(s) 569
AsuHPI GGTGA 2 cut(s) 25, 617
AvaI CYCGRG 2 cut(s) 27, 284
BanII GRGCYC 1 cut(s) 233
Bbv12I GWGCWC 1 cut(s) 233
BbvI GCAGC 1 cut(s) 37
BccI CCATC 2 cut(s) 500, 506
BciT130I CCWGG 2 cut(s) 187, 573
BcoDI GTCTC 2 cut(s) 257, 393
BcuI ACTAGT 1 cut(s) 464
BfaI CTAG 1 cut(s) 465
BfmI CTRYAG 1 cut(s) 96
BfoI RGCGCY 1 cut(s) 206
BglII AGATCT 1 cut(s) 265
BisI GCNGC 1 cut(s) 51
BlpI GCTNAGC 1 cut(s) 132
BlsI GCNGC 1 cut(s) 52
Bme1390I CCNGG 2 cut(s) 187, 573
BmeT110I CYCGRG 2 cut(s) 27, 284
BmgT120I GGNCC 1 cut(s) 569
BmrFI CCNGG 2 cut(s) 187, 573
BmsI GCATC 1 cut(s) 237
BoxI GACNNNNGTC 1 cut(s) 29
BpmI CTGGAG 2 cut(s) 285, 585
Bpu1102I GCTNAGC 1 cut(s) 132
BpuEI CTTGAG 2 cut(s) 328, 674
BsaJI CCNNGG 1 cut(s) 186
BsaXI ACNNNNNCTCC 4 cut(s) 25, 55, 139, 169
Bsc4I CCNNNNNNNGG 1 cut(s) 567
BseBI CCWGG 2 cut(s) 187, 573
BseDI CCNNGG 1 cut(s) 186
BseLI CCNNNNNNNGG 1 cut(s) 567
BseMII CTCAG 5 cut(s) 105, 146, 155, 464, 480
BseRI GAGGAG 2 cut(s) 33, 69
BseXI GCAGC 1 cut(s) 37
BshFI GGCC 1 cut(s) 571
BsiHKAI GWGCWC 1 cut(s) 233
BsiHKCI CYCGRG 2 cut(s) 27, 284
BsiSI CCGG 1 cut(s) 20
BslI CCNNNNNNNGG 1 cut(s) 567
BsmAI GTCTC 2 cut(s) 257, 393
BsmBI CGTCTC 1 cut(s) 257
BsnI GGCC 1 cut(s) 571
BsoBI CYCGRG 2 cut(s) 27, 284
Bsp1286I GDGCHC 1 cut(s) 233
Bsp143I GATC 6 cut(s) 100, 107, 175, 222, 265, 476
Bsp1720I GCTNAGC 1 cut(s) 132
BspACI CCGC 1 cut(s) 83
BspANI GGCC 1 cut(s) 571
BspCNI CTCAG 5 cut(s) 106, 145, 154, 465, 481
BspMAI CTGCAG 1 cut(s) 100
BspPI GGATC 1 cut(s) 170
BssECI CCNNGG 1 cut(s) 186
BssMI GATC 6 cut(s) 100, 107, 175, 222, 265, 476
Bst2UI CCWGG 2 cut(s) 187, 573
Bst4CI ACNGT 2 cut(s) 166, 366
Bst6I CTCTTC 2 cut(s) 69, 366
BstC8I GCNNGC 3 cut(s) 129, 138, 201
BstDEI CTNAG 7 cut(s) 114, 132, 141, 318, 411, 473, 489
BstH2I RGCGCY 1 cut(s) 206
BstHHI GCGC 2 cut(s) 154, 205
BstKTI GATC 6 cut(s) 103, 110, 178, 225, 268, 479
BstMAI GTCTC 2 cut(s) 257, 393
BstMBI GATC 6 cut(s) 100, 107, 175, 222, 265, 476
BstMWI GCNNNNNNNGC 4 cut(s) 133, 137, 209, 658
BstNI CCWGG 2 cut(s) 187, 573
BstPAI GACNNNNGTC 1 cut(s) 29
BstSCI CCNGG 2 cut(s) 185, 571
BstSFI CTRYAG 1 cut(s) 96
BstV1I GCAGC 1 cut(s) 37
BstX2I RGATCY 2 cut(s) 175, 265
BstYI RGATCY 2 cut(s) 175, 265
BsuRI GGCC 1 cut(s) 571
BtsIMutI CAGTG 1 cut(s) 576
Cac8I GCNNGC 3 cut(s) 129, 138, 201
CaiI CAGNNNCTG 1 cut(s) 578
CfoI GCGC 2 cut(s) 154, 205
Cfr13I GGNCC 1 cut(s) 569
CseI GACGC 1 cut(s) 239
Csp6I GTAC 2 cut(s) 367, 470
CviQI GTAC 2 cut(s) 367, 470
DdeI CTNAG 7 cut(s) 114, 132, 141, 318, 411, 473, 489
DpnI GATC 6 cut(s) 102, 109, 177, 224, 267, 478
DpnII GATC 6 cut(s) 100, 107, 175, 222, 265, 476
Eam1104I CTCTTC 2 cut(s) 69, 366
EarI CTCTTC 2 cut(s) 69, 366
Ecl136II GAGCTC 1 cut(s) 231
Eco24I GRGCYC 1 cut(s) 233
Eco47III AGCGCT 1 cut(s) 204
Eco53kI GAGCTC 1 cut(s) 231
Eco57I CTGAAG 1 cut(s) 203
Eco88I CYCGRG 2 cut(s) 27, 284
EcoICRI GAGCTC 1 cut(s) 231
EcoRII CCWGG 2 cut(s) 185, 571
EcoT38I GRGCYC 1 cut(s) 233
Esp3I CGTCTC 1 cut(s) 257
FaiI YATR 3 cut(s) 356, 557, 635
FalI AAGNNNNNCTT 2 cut(s) 201, 233
FblI GTMKAC 1 cut(s) 161
Fnu4HI GCNGC 1 cut(s) 51
FriOI GRGCYC 1 cut(s) 233
Fsp4HI GCNGC 1 cut(s) 51
FspBI CTAG 1 cut(s) 465
GlaI GCGC 2 cut(s) 153, 204
GluI GCNGC 1 cut(s) 51
GsuI CTGGAG 2 cut(s) 285, 585
HaeII RGCGCY 1 cut(s) 206
HaeIII GGCC 1 cut(s) 571
HapII CCGG 1 cut(s) 20
HgaI GACGC 1 cut(s) 239
HhaI GCGC 2 cut(s) 154, 205
Hin6I GCGC 2 cut(s) 152, 203
HinP1I GCGC 2 cut(s) 152, 203
HincII GTYRAC 1 cut(s) 162
HindII GTYRAC 1 cut(s) 162
HindIII AAGCTT 1 cut(s) 350
HinfI GANTC 6 cut(s) 25, 30, 214, 334, 386, 419
HpaII CCGG 1 cut(s) 20
HphI GGTGA 2 cut(s) 25, 617
Hpy166II GTNNAC 2 cut(s) 162, 470
Hpy188I TCNGA 5 cut(s) 105, 144, 222, 484, 505
Hpy188III TCNNGA 7 cut(s) 226, 284, 302, 331, 338, 564, 594
Hpy8I GTNNAC 2 cut(s) 162, 470
Hpy99I CGWCG 2 cut(s) 163, 184
HpyAV CCTTC 1 cut(s) 132
HpyCH4III ACNGT 2 cut(s) 166, 366
HpyCH4IV ACGT 2 cut(s) 279, 397
HpyCH4V TGCA 2 cut(s) 98, 637
HpyF10VI GCNNNNNNNGC 4 cut(s) 133, 137, 209, 658
HpyF3I CTNAG 7 cut(s) 114, 132, 141, 318, 411, 473, 489
HpySE526I ACGT 2 cut(s) 279, 397
HspAI GCGC 2 cut(s) 152, 203
Kzo9I GATC 6 cut(s) 100, 107, 175, 222, 265, 476
LmnI GCTCC 2 cut(s) 82, 236
Lsp1109I GCAGC 1 cut(s) 37
LweI GCATC 1 cut(s) 237
MaeI CTAG 1 cut(s) 465
MaeII ACGT 2 cut(s) 279, 397
MaeIII GTNAC 3 cut(s) 31, 117, 166
MalI GATC 6 cut(s) 102, 109, 177, 224, 267, 478
MboI GATC 6 cut(s) 100, 107, 175, 222, 265, 476
MboII GAAGA 7 cut(s) 56, 204, 209, 260, 355, 383, 620
MflI RGATCY 2 cut(s) 175, 265
MhlI GDGCHC 1 cut(s) 233
MluCI AATT 1 cut(s) 630
MlyI GAGTC 4 cut(s) 19, 39, 395, 413
MmeI TCCRAC 3 cut(s) 258, 453, 508
MspA1I CMGCKG 1 cut(s) 113
MspI CCGG 1 cut(s) 20
MspR9I CCNGG 2 cut(s) 187, 573
MvaI CCWGG 2 cut(s) 187, 573
MwoI GCNNNNNNNGC 4 cut(s) 133, 137, 209, 658
NdeII GATC 6 cut(s) 100, 107, 175, 222, 265, 476
NmuCI GTSAC 1 cut(s) 31
PaeR7I CTCGAG 2 cut(s) 27, 284
PfeI GAWTC 2 cut(s) 214, 334
PkrI GCNGC 1 cut(s) 52
PleI GAGTC 4 cut(s) 19, 38, 394, 413
PpsI GAGTC 4 cut(s) 19, 38, 394, 413
PshAI GACNNNNGTC 1 cut(s) 29
Psp124BI GAGCTC 1 cut(s) 233
Psp6I CCWGG 2 cut(s) 185, 571
PspGI CCWGG 2 cut(s) 185, 571
PspPI GGNCC 1 cut(s) 569
PspXI VCTCGAGB 1 cut(s) 27
PstI CTGCAG 1 cut(s) 100
PstNI CAGNNNCTG 1 cut(s) 578
PsuI RGATCY 2 cut(s) 175, 265
PvuII CAGCTG 1 cut(s) 113
RsaI GTAC 2 cut(s) 368, 471
RsaNI GTAC 2 cut(s) 367, 470
SacI GAGCTC 1 cut(s) 233
SalI GTCGAC 1 cut(s) 160
SatI GCNGC 1 cut(s) 51
Sau3AI GATC 6 cut(s) 100, 107, 175, 222, 265, 476
Sau96I GGNCC 1 cut(s) 569
SchI GAGTC 4 cut(s) 19, 39, 395, 413
ScrFI CCNGG 2 cut(s) 187, 573
SduI GDGCHC 1 cut(s) 233
SfaNI GCATC 1 cut(s) 237
SfcI CTRYAG 1 cut(s) 96
Sfr274I CTCGAG 2 cut(s) 27, 284
SlaI CTCGAG 2 cut(s) 27, 284
SmlI CTYRAG 4 cut(s) 27, 284, 307, 653
SmoI CTYRAG 4 cut(s) 27, 284, 307, 653
SpeI ACTAGT 1 cut(s) 464
Sse9I AATT 1 cut(s) 630
SsiI CCGC 1 cut(s) 83
SspMI CTAG 1 cut(s) 465
SstI GAGCTC 1 cut(s) 233
StyD4I CCNGG 2 cut(s) 185, 571
TaaI ACNGT 2 cut(s) 166, 366
TaiI ACGT 2 cut(s) 282, 400
TaqI TCGA 6 cut(s) 11, 28, 161, 225, 285, 330
TasI AATT 1 cut(s) 630
TatI WGTACW 1 cut(s) 469
TfiI GAWTC 2 cut(s) 214, 334
TscAI CASTG 1 cut(s) 583
TseFI GTSAC 1 cut(s) 31
TseI GCWGC 1 cut(s) 50
Tsp45I GTSAC 1 cut(s) 31
TspDTI ATGAA 3 cut(s) 48, 362, 544
TspGWI ACGGA 3 cut(s) 147, 168, 447
TspRI CASTG 1 cut(s) 583
XhoI CTCGAG 2 cut(s) 27, 284
XmiI GTMKAC 1 cut(s) 161
XspI CTAG 1 cut(s) 465
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.