Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001501

Physical Location & Seq

Genomic Coordinates Reverse (-)

12541647 .. 12543904

Gene Structure 2258 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g14150.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGAAGAACCAAAGGCAACGCCACAAACCCAAATCCCAAATCCTCCTCCGAACTCTGTCAGAACTCCCCCTCATCTTCAATCAAAGACCAAGAAGAGACTCCTTGACAGTGATGCCCAAAACTCCAGCTCCTTCAAGATTCGTGCACTCCTCAGAGACATTCGTCCTAATGTTCTTGAGGTTCTCCGGACGCCTGACTTTCAGAAGTGTAAGGCAGCCAACAAAATTCAAGAACAGGTGAAGCTTCTGATGGAACTATACAAACAGATGACACCAGAAGCACTTTCTGCACCAAGGTTTAACAATGAGCCAGAAGGACAGCTTTCATCTGGTGCCCCATCAAAACATGAGCTTCCTTCAGGTGTATCTGGTCAGAATCAGCAGGCTGAAGATGGTCAAAATAAAGAGACGTATGTTGTTGGAGGATCAGCTTTTGGCTGGAACTTCATCACCTTTTCCAGCATGGAACCAGTCTATTATGGTATGACAAAGGAGTCGTTTCGAACACAAGCAGCAAAGCTGACAAGTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

178

Amino Acids

19.67

Weight (kDa)

9.19

Isoelectric Point (pI)

46.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01730
fragaria_vesca	FvH4_7g14150 FvH4_7g29600
malus_domestica	MD01G1056800.v1.1 MD01G1057500.v1.1 MD01G1202200.v1.1 MD07G1139200.v1.1
prunus_persica	Prupe.2G167900_v2.0.a1 Prupe.2G295600_v2.0.a1 Prupe.2G295600_v2.0.a1
pyrus_communis	pycom01g08560 pycom01g08690 pycom01g08730 pycom01g21180 pycom07g13620 pycom07g13660 pycom07g13690 pycom07g13710 pycom07g13950
rosa_chinensis	RchiOBHm_Chr1g0354801 RchiOBHm_Chr1g0355051 RchiOBHm_Chr1g0377581
rosa_laevigata	RLG00000026515 RLG00000028180
rosa_multiflora	Rmu_sc0002832.1_g000009 Rmu_sc0003115.1_g000028 Rmu_sc0003940.1_g000007 Rmu_sc0012587.1_g000007 Rmu_sc0016725.1_g000003
rosa_roxburghii	Rroxscaffold_4G00281220 Rroxscaffold_4G00300710
rosa_rugosa	Rorug01G0244700 Rorug01G0403600
rosa_samantha	Rh1AG255700 Rh1AG257000 Rh1AG429200 Rh1BG226300 Rh1BG380100 Rh1CG238800 Rh1CG239100 Rh1CG240600 Rh1CG394300 Rh1DG253900 Rh1DG411300
rosa_wichuraiana	Rw0G011190 Rw1G022380 Rw1G022430 Rw1G022580 Rw1G022650 Rw1G022660 Rw1G036960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	493
AccB1I	GGYRCC	1 cut(s)	332
AccIII	TCCGGA	1 cut(s)	186
AclWI	GGATC	1 cut(s)	433
AcsI	RAATTY	1 cut(s)	225
AcuI	CTGAAG	2 cut(s)	342, 408
AcyI	GRCGYC	1 cut(s)	191
AgsI	TTSAA	3 cut(s)	80, 136, 230
AluBI	AGCT	6 cut(s)	129, 244, 322, 352, 431, 520
AluI	AGCT	6 cut(s)	129, 244, 322, 352, 431, 520
Alw21I	GWGCWC	1 cut(s)	148
Alw26I	GTCTC	3 cut(s)	91, 150, 401
Alw44I	GTGCAC	1 cut(s)	144
AlwI	GGATC	1 cut(s)	433
Aor13HI	TCCGGA	1 cut(s)	186
ApaLI	GTGCAC	1 cut(s)	144
ApeKI	GCWGC	2 cut(s)	215, 512
ApoI	RAATTY	1 cut(s)	225
AsuHPI	GGTGA	2 cut(s)	250, 442
AsuII	TTCGAA	1 cut(s)	502
BaeGI	GKGCMC	2 cut(s)	148, 337
BanI	GGYRCC	1 cut(s)	332
Bbv12I	GWGCWC	1 cut(s)	148
BbvI	GCAGC	2 cut(s)	227, 524
BccI	CCATC	3 cut(s)	244, 346, 386
BcoDI	GTCTC	3 cut(s)	91, 150, 401
BisI	GCNGC	2 cut(s)	216, 513
BlsI	GCNGC	2 cut(s)	217, 514
BmiI	GGNNCC	2 cut(s)	334, 468
BmsI	GCATC	1 cut(s)	103
BoxI	GACNNNNGTC	1 cut(s)	162
BpmI	CTGGAG	1 cut(s)	109
Bpu14I	TTCGAA	1 cut(s)	502
BpuEI	CTTGAG	1 cut(s)	197
BsaHI	GRCGYC	1 cut(s)	191
BsaJI	CCNNGG	1 cut(s)	293
BsaWI	WCCGGW	1 cut(s)	186
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bse1I	ACTGG	1 cut(s)	470
BseAI	TCCGGA	1 cut(s)	186
BseDI	CCNNGG	1 cut(s)	293
BseMII	CTCAG	1 cut(s)	166
BseNI	ACTGG	1 cut(s)	470
BseRI	GAGGAG	2 cut(s)	36, 140
BseSI	GKGCMC	2 cut(s)	148, 337
BseXI	GCAGC	2 cut(s)	227, 524
BsgI	GTGCAG	1 cut(s)	273
BshNI	GGYRCC	1 cut(s)	332
BsiHKAI	GWGCWC	1 cut(s)	148
BsiSI	CCGG	1 cut(s)	187
BsmAI	GTCTC	3 cut(s)	91, 150, 401
BsmBI	CGTCTC	1 cut(s)	401
Bsp119I	TTCGAA	1 cut(s)	502
Bsp1286I	GDGCHC	2 cut(s)	148, 337
Bsp13I	TCCGGA	1 cut(s)	186
Bsp143I	GATC	1 cut(s)	425
BspCNI	CTCAG	1 cut(s)	165
BspEI	TCCGGA	1 cut(s)	186
BspLI	GGNNCC	2 cut(s)	334, 468
BspPI	GGATC	1 cut(s)	433
BspT104I	TTCGAA	1 cut(s)	502
BspT107I	GGYRCC	1 cut(s)	332
BsrI	ACTGG	1 cut(s)	470
BssECI	CCNNGG	1 cut(s)	293
BssMI	GATC	1 cut(s)	425
BssNI	GRCGYC	1 cut(s)	191
BssT1I	CCWWGG	1 cut(s)	293
Bst4CI	ACNGT	1 cut(s)	110
Bst6I	CTCTTC	1 cut(s)	89
BstACI	GRCGYC	1 cut(s)	191
BstAPI	GCANNNNNTGC	1 cut(s)	287
BstBI	TTCGAA	1 cut(s)	502
BstC8I	GCNNGC	1 cut(s)	384
BstDEI	CTNAG	1 cut(s)	152
BstKTI	GATC	1 cut(s)	428
BstMAI	GTCTC	3 cut(s)	91, 150, 401
BstMBI	GATC	1 cut(s)	425
BstMWI	GCNNNNNNNGC	1 cut(s)	287
BstPAI	GACNNNNGTC	1 cut(s)	162
BstSLI	GKGCMC	2 cut(s)	148, 337
BstV1I	GCAGC	2 cut(s)	227, 524
BtsIMutI	CAGTG	1 cut(s)	115
Cac8I	GCNNGC	1 cut(s)	384
CseI	GACGC	1 cut(s)	199
CviAII	CATG	2 cut(s)	347, 463
DdeI	CTNAG	1 cut(s)	152
DpnI	GATC	1 cut(s)	427
DpnII	GATC	1 cut(s)	425
DrdI	GACNNNNNNGTC	1 cut(s)	493
DseDI	GACNNNNNNGTC	1 cut(s)	493
Eam1104I	CTCTTC	1 cut(s)	89
EarI	CTCTTC	1 cut(s)	89
Eco130I	CCWWGG	1 cut(s)	293
Eco57I	CTGAAG	2 cut(s)	342, 408
EcoT14I	CCWWGG	1 cut(s)	293
ErhI	CCWWGG	1 cut(s)	293
Esp3I	CGTCTC	1 cut(s)	401
FaeI	CATG	2 cut(s)	350, 466
FaiI	YATR	6 cut(s)	259, 348, 414, 464, 480, 485
FalI	AAGNNNNNCTT	2 cut(s)	306, 338
FatI	CATG	2 cut(s)	346, 462
Fnu4HI	GCNGC	2 cut(s)	216, 513
Fsp4HI	GCNGC	2 cut(s)	216, 513
GluI	GCNGC	2 cut(s)	216, 513
GsuI	CTGGAG	1 cut(s)	109
HapII	CCGG	1 cut(s)	187
HgaI	GACGC	1 cut(s)	199
Hin1I	GRCGYC	1 cut(s)	191
Hin1II	CATG	2 cut(s)	350, 466
HindIII	AAGCTT	1 cut(s)	242
HinfI	GANTC	4 cut(s)	99, 139, 376, 494
HpaII	CCGG	1 cut(s)	187
HphI	GGTGA	2 cut(s)	250, 442
Hpy166II	GTNNAC	1 cut(s)	146
Hpy188I	TCNGA	6 cut(s)	51, 62, 155, 204, 249, 375
Hpy188III	TCNNGA	4 cut(s)	136, 176, 187, 230
Hpy8I	GTNNAC	1 cut(s)	146
HpyAV	CCTTC	3 cut(s)	142, 308, 366
HpyCH4III	ACNGT	1 cut(s)	110
HpyCH4IV	ACGT	1 cut(s)	410
HpyCH4V	TGCA	2 cut(s)	146, 290
HpyF10VI	GCNNNNNNNGC	1 cut(s)	287
HpyF3I	CTNAG	1 cut(s)	152
HpySE526I	ACGT	1 cut(s)	410
Hsp92I	GRCGYC	1 cut(s)	191
Hsp92II	CATG	2 cut(s)	350, 466
Kpn2I	TCCGGA	1 cut(s)	186
Kzo9I	GATC	1 cut(s)	425
LmnI	GCTCC	1 cut(s)	134
Lsp1109I	GCAGC	2 cut(s)	227, 524
LweI	GCATC	1 cut(s)	103
MaeII	ACGT	1 cut(s)	410
MalI	GATC	1 cut(s)	427
MboI	GATC	1 cut(s)	425
MboII	GAAGA	4 cut(s)	17, 68, 106, 401
MhlI	GDGCHC	2 cut(s)	148, 337
MluCI	AATT	1 cut(s)	225
MlyI	GAGTC	2 cut(s)	93, 503
MmeI	TCCRAC	1 cut(s)	400
MnlI	CCTC	6 cut(s)	54, 57, 81, 161, 172, 416
MroI	TCCGGA	1 cut(s)	186
MseI	TTAA	1 cut(s)	300
MspI	CCGG	1 cut(s)	187
MwoI	GCNNNNNNNGC	1 cut(s)	287
NdeII	GATC	1 cut(s)	425
NlaIII	CATG	2 cut(s)	350, 466
NlaIV	GGNNCC	2 cut(s)	334, 468
NspV	TTCGAA	1 cut(s)	502
PfeI	GAWTC	2 cut(s)	139, 376
PkrI	GCNGC	2 cut(s)	217, 514
PleI	GAGTC	2 cut(s)	93, 502
PpsI	GAGTC	2 cut(s)	93, 502
PshAI	GACNNNNGTC	1 cut(s)	162
PspN4I	GGNNCC	2 cut(s)	334, 468
SaqAI	TTAA	1 cut(s)	300
SatI	GCNGC	2 cut(s)	216, 513
Sau3AI	GATC	1 cut(s)	425
SchI	GAGTC	2 cut(s)	93, 503
SduI	GDGCHC	2 cut(s)	148, 337
SfaNI	GCATC	1 cut(s)	103
SfuI	TTCGAA	1 cut(s)	502
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	1 cut(s)	225
StyI	CCWWGG	1 cut(s)	293
TaaI	ACNGT	1 cut(s)	110
TaiI	ACGT	1 cut(s)	413
TaqI	TCGA	1 cut(s)	502
TasI	AATT	1 cut(s)	225
TfiI	GAWTC	2 cut(s)	139, 376
Tru1I	TTAA	1 cut(s)	300
Tru9I	TTAA	1 cut(s)	300
TscAI	CASTG	1 cut(s)	115
TseI	GCWGC	2 cut(s)	215, 512
TspDTI	ATGAA	2 cut(s)	315, 436
TspRI	CASTG	1 cut(s)	115
VneI	GTGCAC	1 cut(s)	144
XapI	RAATTY	1 cut(s)	225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.