Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001501

Physical Location & Seq

Genomic Coordinates Reverse (-)

28659377 .. 28661256

Gene Structure 1880 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G295600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

ATGATCAATATGGACCTCCAACAACATTCCTCCATGTTTAAAATTCGCGCTCTTGTTCAACAACTCCGTCCCAATTTTATTGAGGTTCTTCAGACACCAGATTTTCGAAATAGTGAAGCAGCTGATGAAATTCGACAACAAATGAAGCTTCTGATGGATCTATACAAACAGATGGCCAAGGATGCAGGAGACACACACAGGAAGTTTGTGTCGGAAACACAGCATTCGACACATGACAGTGATCCTGCGAAAGAAAACCAAGATGGCAAACAACAAAAGCATCTTCAACCAAGATGCTCTGTAGAGAAGCCAGTGCAAGCTCGTACTCGGTCGATCCCTCTCAGCTCATATAAGAAACCAGTTGCTAGCCAACTACAAGGGAGCTACATTGTGGGGGGTTCAGCTTTTGGTTGGAACTTCATCACATTTTCAGGCAGTAAACCAATCTATTATGGGGTGACAAAGGAGGAATATCGAAGCAGAAACAACACATCGGGAACACGGTCTGTAGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

172

Amino Acids

19.53

Weight (kDa)

9.57

Isoelectric Point (pI)

47.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01730
fragaria_vesca	FvH4_7g14150 FvH4_7g29600
malus_domestica	MD01G1056800.v1.1 MD01G1057500.v1.1 MD01G1202200.v1.1 MD07G1139200.v1.1
prunus_persica	Prupe.2G167900_v2.0.a1 Prupe.2G295600_v2.0.a1 Prupe.2G295600_v2.0.a1
pyrus_communis	pycom01g08560 pycom01g08690 pycom01g08730 pycom01g21180 pycom07g13620 pycom07g13660 pycom07g13690 pycom07g13710 pycom07g13950
rosa_chinensis	RchiOBHm_Chr1g0354801 RchiOBHm_Chr1g0355051 RchiOBHm_Chr1g0377581
rosa_laevigata	RLG00000026515 RLG00000028180
rosa_multiflora	Rmu_sc0002832.1_g000009 Rmu_sc0003115.1_g000028 Rmu_sc0003940.1_g000007 Rmu_sc0012587.1_g000007 Rmu_sc0016725.1_g000003
rosa_roxburghii	Rroxscaffold_4G00281220 Rroxscaffold_4G00300710
rosa_rugosa	Rorug01G0244700 Rorug01G0403600
rosa_samantha	Rh1AG255700 Rh1AG257000 Rh1AG429200 Rh1BG226300 Rh1BG380100 Rh1CG238800 Rh1CG239100 Rh1CG240600 Rh1CG394300 Rh1DG253900 Rh1DG411300
rosa_wichuraiana	Rw0G011190 Rw1G022380 Rw1G022430 Rw1G022580 Rw1G022650 Rw1G022660 Rw1G036960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	48
AclWI	GGATC	3 cut(s)	165, 236, 328
AcoI	YGGCCR	1 cut(s)	174
AcsI	RAATTY	2 cut(s)	42, 129
AcuI	CTGAAG	1 cut(s)	74
AfaI	GTAC	1 cut(s)	325
AgsI	TTSAA	2 cut(s)	59, 287
AluBI	AGCT	6 cut(s)	122, 148, 320, 345, 384, 404
AluI	AGCT	6 cut(s)	122, 148, 320, 345, 384, 404
Alw26I	GTCTC	1 cut(s)	183
AlwI	GGATC	3 cut(s)	165, 236, 328
AoxI	GGCC	1 cut(s)	174
ApeKI	GCWGC	1 cut(s)	119
ApoI	RAATTY	2 cut(s)	42, 129
AspLEI	GCGC	1 cut(s)	50
AspS9I	GGNCC	1 cut(s)	13
AsuHPI	GGTGA	1 cut(s)	469
AsuII	TTCGAA	1 cut(s)	106
AsuNHI	GCTAGC	1 cut(s)	365
AvaII	GGWCC	1 cut(s)	13
BalI	TGGCCA	1 cut(s)	176
BbvI	GCAGC	1 cut(s)	131
BccI	CCATC	3 cut(s)	148, 166, 257
BclI	TGATCA	1 cut(s)	3
BcoDI	GTCTC	1 cut(s)	183
BfaI	CTAG	1 cut(s)	366
BfmI	CTRYAG	2 cut(s)	300, 507
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
Bme18I	GGWCC	1 cut(s)	13
BmgT120I	GGNCC	1 cut(s)	13
BmsI	GCATC	3 cut(s)	172, 284, 289
BmtI	GCTAGC	1 cut(s)	369
Bpu14I	TTCGAA	1 cut(s)	106
BsaJI	CCNNGG	1 cut(s)	177
Bse1I	ACTGG	2 cut(s)	311, 359
BseDI	CCNNGG	1 cut(s)	177
BseGI	GGATG	1 cut(s)	187
BseMII	CTCAG	1 cut(s)	355
BseNI	ACTGG	2 cut(s)	311, 359
BseXI	GCAGC	1 cut(s)	131
Bsh1236I	CGCG	1 cut(s)	48
Bsh1285I	CGRYCG	1 cut(s)	332
BshFI	GGCC	1 cut(s)	176
BsiEI	CGRYCG	1 cut(s)	332
BslFI	GGGAC	1 cut(s)	54
BsmAI	GTCTC	1 cut(s)	183
BsmFI	GGGAC	1 cut(s)	54
BsmI	GAATGC	1 cut(s)	223
BsnI	GGCC	1 cut(s)	176
Bsp119I	TTCGAA	1 cut(s)	106
Bsp143I	GATC	4 cut(s)	3, 157, 241, 333
BspANI	GGCC	1 cut(s)	176
BspCNI	CTCAG	1 cut(s)	354
BspFNI	CGCG	1 cut(s)	48
BspOI	GCTAGC	1 cut(s)	369
BspPI	GGATC	3 cut(s)	165, 236, 328
BspT104I	TTCGAA	1 cut(s)	106
BsrI	ACTGG	2 cut(s)	311, 359
BssECI	CCNNGG	1 cut(s)	177
BssMI	GATC	4 cut(s)	3, 157, 241, 333
BssT1I	CCWWGG	1 cut(s)	177
Bst4CI	ACNGT	2 cut(s)	239, 504
BstBI	TTCGAA	1 cut(s)	106
BstC8I	GCNNGC	2 cut(s)	318, 367
BstDEI	CTNAG	1 cut(s)	341
BstF5I	GGATG	1 cut(s)	187
BstFNI	CGCG	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	50
BstKTI	GATC	4 cut(s)	6, 160, 244, 336
BstMAI	GTCTC	1 cut(s)	183
BstMBI	GATC	4 cut(s)	3, 157, 241, 333
BstMCI	CGRYCG	1 cut(s)	332
BstMWI	GCNNNNNNNGC	1 cut(s)	182
BstSFI	CTRYAG	2 cut(s)	300, 507
BstUI	CGCG	1 cut(s)	48
BstV1I	GCAGC	1 cut(s)	131
BstX2I	RGATCY	1 cut(s)	157
BstYI	RGATCY	1 cut(s)	157
BsuRI	GGCC	1 cut(s)	176
BtsCI	GGATG	1 cut(s)	187
BtsIMutI	CAGTG	2 cut(s)	244, 318
Cac8I	GCNNGC	2 cut(s)	318, 367
CfoI	GCGC	1 cut(s)	50
Cfr13I	GGNCC	1 cut(s)	13
Csp6I	GTAC	1 cut(s)	324
CviAII	CATG	2 cut(s)	34, 233
CviJI	RGCY	9 cut(s)	122, 148, 176, 310, 320, 345, 369, 384, 404
CviKI_1	RGCY	9 cut(s)	122, 148, 176, 310, 320, 345, 369, 384, 404
CviQI	GTAC	1 cut(s)	324
DdeI	CTNAG	1 cut(s)	341
DpnI	GATC	4 cut(s)	5, 159, 243, 335
DpnII	GATC	4 cut(s)	3, 157, 241, 333
DraI	TTTAAA	1 cut(s)	40
EaeI	YGGCCR	1 cut(s)	174
Eco130I	CCWWGG	1 cut(s)	177
Eco47I	GGWCC	1 cut(s)	13
Eco57I	CTGAAG	1 cut(s)	74
EcoT14I	CCWWGG	1 cut(s)	177
ErhI	CCWWGG	1 cut(s)	177
FaeI	CATG	2 cut(s)	37, 236
FaiI	YATR	8 cut(s)	11, 35, 163, 234, 349, 351, 453, 514
FaqI	GGGAC	1 cut(s)	54
FatI	CATG	2 cut(s)	33, 232
FbaI	TGATCA	1 cut(s)	3
Fnu4HI	GCNGC	1 cut(s)	120
FokI	GGATG	1 cut(s)	194
Fsp4HI	GCNGC	1 cut(s)	120
FspBI	CTAG	1 cut(s)	366
GlaI	GCGC	1 cut(s)	49
GluI	GCNGC	1 cut(s)	120
HaeIII	GGCC	1 cut(s)	176
HhaI	GCGC	1 cut(s)	50
Hin1II	CATG	2 cut(s)	37, 236
Hin6I	GCGC	1 cut(s)	48
HinP1I	GCGC	1 cut(s)	48
HindIII	AAGCTT	1 cut(s)	146
HphI	GGTGA	1 cut(s)	469
Hpy166II	GTNNAC	1 cut(s)	440
Hpy188I	TCNGA	3 cut(s)	93, 153, 214
Hpy188III	TCNNGA	1 cut(s)	495
Hpy8I	GTNNAC	1 cut(s)	440
HpyCH4III	ACNGT	2 cut(s)	239, 504
HpyCH4V	TGCA	2 cut(s)	185, 316
HpyF10VI	GCNNNNNNNGC	1 cut(s)	182
HpyF3I	CTNAG	1 cut(s)	341
Hsp92II	CATG	2 cut(s)	37, 236
HspAI	GCGC	1 cut(s)	48
Ksp22I	TGATCA	1 cut(s)	3
Kzo9I	GATC	4 cut(s)	3, 157, 241, 333
LmnI	GCTCC	1 cut(s)	381
LpnPI	CCDG	7 cut(s)	111, 171, 184, 258, 324, 372, 417
Lsp1109I	GCAGC	1 cut(s)	131
LweI	GCATC	3 cut(s)	172, 284, 289
MaeI	CTAG	1 cut(s)	366
MaeIII	GTNAC	1 cut(s)	457
MalI	GATC	4 cut(s)	5, 159, 243, 335
MboI	GATC	4 cut(s)	3, 157, 241, 333
MboII	GAAGA	2 cut(s)	80, 275
MflI	RGATCY	1 cut(s)	157
MlsI	TGGCCA	1 cut(s)	176
MluCI	AATT	3 cut(s)	42, 73, 129
MluNI	TGGCCA	1 cut(s)	176
MmeI	TCCRAC	3 cut(s)	43, 192, 392
MnlI	CCTC	5 cut(s)	26, 40, 76, 348, 460
Mox20I	TGGCCA	1 cut(s)	176
MscI	TGGCCA	1 cut(s)	176
MseI	TTAA	1 cut(s)	39
MslI	CAYNNNNRTG	1 cut(s)	237
Msp20I	TGGCCA	1 cut(s)	176
MspA1I	CMGCKG	1 cut(s)	122
Mva1269I	GAATGC	1 cut(s)	223
MvnI	CGCG	1 cut(s)	48
MwoI	GCNNNNNNNGC	1 cut(s)	182
NdeII	GATC	4 cut(s)	3, 157, 241, 333
NheI	GCTAGC	1 cut(s)	365
NlaIII	CATG	2 cut(s)	37, 236
NmuCI	GTSAC	1 cut(s)	457
NspV	TTCGAA	1 cut(s)	106
PctI	GAATGC	1 cut(s)	223
PkrI	GCNGC	1 cut(s)	121
PspPI	GGNCC	1 cut(s)	13
PsuI	RGATCY	1 cut(s)	157
PvuII	CAGCTG	1 cut(s)	122
RsaI	GTAC	1 cut(s)	325
RsaNI	GTAC	1 cut(s)	324
RseI	CAYNNNNRTG	1 cut(s)	237
SaqAI	TTAA	1 cut(s)	39
SatI	GCNGC	1 cut(s)	120
Sau3AI	GATC	4 cut(s)	3, 157, 241, 333
Sau96I	GGNCC	1 cut(s)	13
SetI	ASST	8 cut(s)	18, 87, 124, 150, 322, 347, 386, 406
SfaNI	GCATC	3 cut(s)	172, 284, 289
SfcI	CTRYAG	2 cut(s)	300, 507
SfuI	TTCGAA	1 cut(s)	106
SinI	GGWCC	1 cut(s)	13
SmiMI	CAYNNNNRTG	1 cut(s)	237
Sse9I	AATT	3 cut(s)	42, 73, 129
SspMI	CTAG	1 cut(s)	366
StyI	CCWWGG	1 cut(s)	177
TaaI	ACNGT	2 cut(s)	239, 504
TaqI	TCGA	5 cut(s)	106, 133, 227, 332, 475
TaqII	GACCGA	1 cut(s)	318
TasI	AATT	3 cut(s)	42, 73, 129
Tru1I	TTAA	1 cut(s)	39
Tru9I	TTAA	1 cut(s)	39
TscAI	CASTG	2 cut(s)	244, 318
TseFI	GTSAC	1 cut(s)	457
TseI	GCWGC	1 cut(s)	119
Tsp45I	GTSAC	1 cut(s)	457
TspDTI	ATGAA	3 cut(s)	141, 158, 409
TspGWI	ACGGA	1 cut(s)	56
TspRI	CASTG	2 cut(s)	244, 318
VpaK11BI	GGWCC	1 cut(s)	13
XapI	RAATTY	2 cut(s)	42, 129
XspI	CTAG	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.