pycom01g08560

No description available

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Reverse (-)
9511446 .. 9511781
336 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g08560.1

Sequence Viewer

Length: 336 bp
ATGTTGCATATTTCAGACGTTAAACTTCTGATGGAACTATGCAAACAGATGACGGCAGAAACAGTTTCAGCAACAAGAAGTAAGAATGTGCCAGGTGAAAAGCCCCAAGATACAAGGGCTTTTGTAAAACCATCAGAAAATAAGTTTCCAACAGGTGTATCCAGCGAGAAGCAGCAGGCTGAAGATGGTCAGACTCAAGGGACATATATTGTCGGTGGGTCTGCTTTTGGCTGGAATTTCATTACCTTTGTAGGCGAAGAACCAGTCTACTATGGAATAACAAAGGAGTCATTTCGAGCTAATGGCAGCAAAGAAACAGTTCAGACTGTGGAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

112

Amino Acids

12.23

Weight (kDa)

5.46

Isoelectric Point (pI)

40.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 267
AcsI RAATTY 1 cut(s) 235
AcuI CTGAAG 1 cut(s) 201
AjnI CCWGG 1 cut(s) 91
AluBI AGCT 1 cut(s) 299
AluI AGCT 1 cut(s) 299
ApeKI GCWGC 2 cut(s) 172, 306
ApoI RAATTY 1 cut(s) 235
ArsI GACNNNNNNTTYG 2 cut(s) 249, 281
Asp700I GAANNNNTTC 1 cut(s) 318
AsuHPI GGTGA 1 cut(s) 107
BaeI ACNNNNGTAYC 2 cut(s) 141, 174
BbvI GCAGC 2 cut(s) 184, 318
BccI CCATC 3 cut(s) 25, 139, 179
BceAI ACGGC 1 cut(s) 69
BciT130I CCWGG 1 cut(s) 93
BciVI GTATCC 1 cut(s) 169
BfuI GTATCC 1 cut(s) 169
BisI GCNGC 2 cut(s) 173, 307
BlsI GCNGC 2 cut(s) 174, 308
Bme1390I CCNGG 1 cut(s) 93
BmrFI CCNGG 1 cut(s) 93
BpuEI CTTGAG 1 cut(s) 180
Bse1I ACTGG 1 cut(s) 263
BseBI CCWGG 1 cut(s) 93
BseNI ACTGG 1 cut(s) 263
BseXI GCAGC 2 cut(s) 184, 318
BslFI GGGAC 1 cut(s) 214
BsmFI GGGAC 1 cut(s) 214
BsrI ACTGG 1 cut(s) 263
Bst2UI CCWGG 1 cut(s) 93
Bst4CI ACNGT 3 cut(s) 64, 319, 328
BstC8I GCNNGC 1 cut(s) 177
BstNI CCWGG 1 cut(s) 93
BstSCI CCNGG 1 cut(s) 91
BstV1I GCAGC 2 cut(s) 184, 318
BsuI GTATCC 1 cut(s) 169
Cac8I GCNNGC 1 cut(s) 177
CviJI RGCY 5 cut(s) 103, 119, 179, 231, 299
CviKI_1 RGCY 5 cut(s) 103, 119, 179, 231, 299
Eco57I CTGAAG 1 cut(s) 201
EcoRII CCWGG 1 cut(s) 91
FaiI YATR 5 cut(s) 9, 40, 205, 207, 273
FaqI GGGAC 1 cut(s) 214
FblI GTMKAC 1 cut(s) 267
Fnu4HI GCNGC 2 cut(s) 173, 307
Fsp4HI GCNGC 2 cut(s) 173, 307
GluI GCNGC 2 cut(s) 173, 307
HinfI GANTC 2 cut(s) 193, 287
HphI GGTGA 1 cut(s) 107
Hpy166II GTNNAC 1 cut(s) 268
Hpy188I TCNGA 5 cut(s) 16, 30, 136, 192, 324
Hpy8I GTNNAC 1 cut(s) 268
HpyCH4III ACNGT 3 cut(s) 64, 319, 328
HpyCH4IV ACGT 1 cut(s) 18
HpyCH4V TGCA 2 cut(s) 7, 42
HpySE526I ACGT 1 cut(s) 18
LpnPI CCDG 7 cut(s) 78, 105, 138, 161, 175, 217, 276
Lsp1109I GCAGC 2 cut(s) 184, 318
MaeII ACGT 1 cut(s) 18
MboII GAAGA 2 cut(s) 194, 269
MluCI AATT 1 cut(s) 235
MlyI GAGTC 2 cut(s) 187, 296
MmeI TCCRAC 1 cut(s) 173
MroXI GAANNNNTTC 1 cut(s) 318
MseI TTAA 1 cut(s) 21
MspR9I CCNGG 1 cut(s) 93
MvaI CCWGG 1 cut(s) 93
PdmI GAANNNNTTC 1 cut(s) 318
PkrI GCNGC 2 cut(s) 174, 308
PleI GAGTC 2 cut(s) 187, 295
PpsI GAGTC 2 cut(s) 187, 295
Psp6I CCWGG 1 cut(s) 91
PspGI CCWGG 1 cut(s) 91
SaqAI TTAA 1 cut(s) 21
SatI GCNGC 2 cut(s) 173, 307
SchI GAGTC 2 cut(s) 187, 296
ScrFI CCNGG 1 cut(s) 93
SetI ASST 5 cut(s) 21, 97, 157, 248, 301
SmlI CTYRAG 1 cut(s) 195
SmoI CTYRAG 1 cut(s) 195
Sse9I AATT 1 cut(s) 235
StyD4I CCNGG 1 cut(s) 91
TaaI ACNGT 3 cut(s) 64, 319, 328
TaiI ACGT 1 cut(s) 21
TaqI TCGA 1 cut(s) 295
TasI AATT 1 cut(s) 235
Tru1I TTAA 1 cut(s) 21
Tru9I TTAA 1 cut(s) 21
TseI GCWGC 2 cut(s) 172, 306
TspDTI ATGAA 1 cut(s) 229
XapI RAATTY 1 cut(s) 235
XmiI GTMKAC 1 cut(s) 267
XmnI GAANNNNTTC 1 cut(s) 318
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.