RchiOBHm_Chr1g0377581

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0001501
Physical Location & Seq
Reverse (-)
64402389 .. 64404260
1872 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ60102

Sequence Viewer

Length: 669 bp
ATGACAACAATAACGCCACCTCCACATGGAGCAAGCCCACCCCAAAAACCCACTTGTCTTCCTCGCCAAAACCAGACCCAGAAGCAGACCGACGTCAAGAAGCGAAAGCTTTCCAACACCAACACCAACACGGAGAAAGACTCCCCCTACTTCAAAATCCGCGCTCTCCTTCAACAACTCCGTCCTCATTTTATTGAGGTTCTTCAAACACCTGATTTTCGGAACTGTAAAGCAGCTGATGAGATTCAAAAACAGGTGAGGCTTCTCATGGCTCTAAACAAACAAATGACCATGGATACTGGAACACAGAAGAAGTTTGCATCAGAACATCAACAGCATTCGCCCCATGCCAGGCTGCCTGAGAAAGAAAACAAAGATGGATTGCCAACACAGCAGGTTCAACCTAGATGCTCTGTTGAAAAACAACTGCCTAGTGCAAAATGGACTCATTACATCCCAGATAAGAAATCATTTGTCAGCAGCCAGCTACCAGGAAGCTACATTGTGGGTGGTTCGGTTTTTGGTTGGAACTTCATCACATTTTCAGGCAGTAAACCAGTCTATTATGGTGTAACAAAGGAGGCATATCGAAGCAGCCACATAAGATCAGGAGATGCTTCTATGCTTTCAACAGATGGTTCTTTTGGACAAGGGAGACCATCTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

222

Amino Acids

25.0

Weight (kDa)

9.82

Isoelectric Point (pI)

48.7

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 96
Acc36I ACCTGC 1 cut(s) 385
AccII CGCG 1 cut(s) 162
AciI CCGC 1 cut(s) 160
AcyI GRCGYC 1 cut(s) 93
AfiI CCNNNNNNNGG 2 cut(s) 26, 351
AgsI TTSAA 7 cut(s) 154, 173, 206, 248, 401, 419, 630
AjnI CCWGG 2 cut(s) 350, 490
AluBI AGCT 4 cut(s) 109, 236, 487, 498
AluI AGCT 4 cut(s) 109, 236, 487, 498
Alw26I GTCTC 1 cut(s) 649
ApeKI GCWGC 4 cut(s) 233, 355, 480, 594
Asp700I GAANNNNTTC 1 cut(s) 109
AspLEI GCGC 1 cut(s) 164
AsuHPI GGTGA 1 cut(s) 268
BbsI GAAGAC 1 cut(s) 50
BbvI GCAGC 4 cut(s) 245, 342, 492, 606
BccI CCATC 3 cut(s) 371, 629, 667
BciT130I CCWGG 2 cut(s) 352, 492
BciVI GTATCC 1 cut(s) 289
BcoDI GTCTC 1 cut(s) 649
BfaI CTAG 2 cut(s) 405, 432
BfuAI ACCTGC 1 cut(s) 385
BfuI GTATCC 1 cut(s) 289
BisI GCNGC 4 cut(s) 234, 356, 481, 595
BlsI GCNGC 4 cut(s) 235, 357, 482, 596
Bme1390I CCNGG 2 cut(s) 352, 492
BmrFI CCNGG 2 cut(s) 352, 492
BmsI GCATC 3 cut(s) 329, 398, 604
BoxI GACNNNNGTC 1 cut(s) 92
BpiI GAAGAC 1 cut(s) 50
BplI GAGNNNNNCTC 2 cut(s) 125, 157
BsaHI GRCGYC 1 cut(s) 93
BsaI GGTCTC 1 cut(s) 649
BsaJI CCNNGG 1 cut(s) 291
BsaXI ACNNNNNCTCC 1 cut(s) 34
Bsc4I CCNNNNNNNGG 2 cut(s) 26, 351
Bse1I ACTGG 2 cut(s) 304, 557
BseBI CCWGG 2 cut(s) 352, 492
BseDI CCNNGG 1 cut(s) 291
BseGI GGATG 1 cut(s) 453
BseLI CCNNNNNNNGG 2 cut(s) 26, 351
BseMII CTCAG 1 cut(s) 351
BseNI ACTGG 2 cut(s) 304, 557
BseXI GCAGC 4 cut(s) 245, 342, 492, 606
Bsh1236I CGCG 1 cut(s) 162
BslI CCNNNNNNNGG 2 cut(s) 26, 351
BsmAI GTCTC 1 cut(s) 649
BsmI GAATGC 1 cut(s) 337
Bso31I GGTCTC 1 cut(s) 649
Bsp143I GATC 1 cut(s) 605
Bsp19I CCATGG 1 cut(s) 291
BspACI CCGC 1 cut(s) 160
BspCNI CTCAG 1 cut(s) 352
BspFNI CGCG 1 cut(s) 162
BspMI ACCTGC 1 cut(s) 385
BspTNI GGTCTC 1 cut(s) 649
BsrI ACTGG 2 cut(s) 304, 557
BssECI CCNNGG 1 cut(s) 291
BssMI GATC 1 cut(s) 605
BssNI GRCGYC 1 cut(s) 93
BssT1I CCWWGG 1 cut(s) 291
Bst2UI CCWGG 2 cut(s) 352, 492
Bst4CI ACNGT 1 cut(s) 227
BstACI GRCGYC 1 cut(s) 93
BstC8I GCNNGC 2 cut(s) 34, 485
BstDEI CTNAG 1 cut(s) 360
BstDSI CCRYGG 1 cut(s) 291
BstF5I GGATG 1 cut(s) 453
BstFNI CGCG 1 cut(s) 162
BstHHI GCGC 1 cut(s) 164
BstKTI GATC 1 cut(s) 608
BstMAI GTCTC 1 cut(s) 649
BstMBI GATC 1 cut(s) 605
BstMWI GCNNNNNNNGC 1 cut(s) 391
BstNI CCWGG 2 cut(s) 352, 492
BstPAI GACNNNNGTC 1 cut(s) 92
BstSCI CCNGG 2 cut(s) 350, 490
BstUI CGCG 1 cut(s) 162
BstV1I GCAGC 4 cut(s) 245, 342, 492, 606
BstV2I GAAGAC 1 cut(s) 50
BsuI GTATCC 1 cut(s) 289
BtgI CCRYGG 1 cut(s) 291
BtsCI GGATG 1 cut(s) 453
BveI ACCTGC 1 cut(s) 385
Cac8I GCNNGC 2 cut(s) 34, 485
CfoI GCGC 1 cut(s) 164
CviAII CATG 4 cut(s) 26, 268, 292, 347
DdeI CTNAG 1 cut(s) 360
DpnI GATC 1 cut(s) 607
DpnII GATC 1 cut(s) 605
Eco130I CCWWGG 1 cut(s) 291
Eco31I GGTCTC 1 cut(s) 649
EcoRII CCWGG 2 cut(s) 350, 490
EcoT14I CCWWGG 1 cut(s) 291
ErhI CCWWGG 1 cut(s) 291
FaeI CATG 4 cut(s) 29, 271, 295, 350
FaiI YATR 9 cut(s) 27, 269, 293, 348, 567, 586, 602, 623, 665
FatI CATG 4 cut(s) 25, 267, 291, 346
Fnu4HI GCNGC 4 cut(s) 234, 356, 481, 595
FokI GGATG 1 cut(s) 440
Fsp4HI GCNGC 4 cut(s) 234, 356, 481, 595
FspBI CTAG 2 cut(s) 405, 432
GlaI GCGC 1 cut(s) 163
GluI GCNGC 4 cut(s) 234, 356, 481, 595
HhaI GCGC 1 cut(s) 164
Hin1I GRCGYC 1 cut(s) 93
Hin1II CATG 4 cut(s) 29, 271, 295, 350
Hin6I GCGC 1 cut(s) 162
HinP1I GCGC 1 cut(s) 162
HindIII AAGCTT 1 cut(s) 107
HinfI GANTC 3 cut(s) 140, 244, 445
HphI GGTGA 1 cut(s) 268
Hpy166II GTNNAC 1 cut(s) 554
Hpy188I TCNGA 2 cut(s) 222, 325
Hpy188III TCNNGA 2 cut(s) 97, 609
Hpy8I GTNNAC 1 cut(s) 554
Hpy99I CGWCG 1 cut(s) 95
HpyAV CCTTC 1 cut(s) 179
HpyCH4III ACNGT 1 cut(s) 227
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 2 cut(s) 320, 437
HpyF10VI GCNNNNNNNGC 1 cut(s) 391
HpyF3I CTNAG 1 cut(s) 360
HpySE526I ACGT 1 cut(s) 93
Hsp92I GRCGYC 1 cut(s) 93
Hsp92II CATG 4 cut(s) 29, 271, 295, 350
HspAI GCGC 1 cut(s) 162
Kzo9I GATC 1 cut(s) 605
LmnI GCTCC 1 cut(s) 29
Lsp1109I GCAGC 4 cut(s) 245, 342, 492, 606
LweI GCATC 3 cut(s) 329, 398, 604
MaeI CTAG 2 cut(s) 405, 432
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 1 cut(s) 571
MalI GATC 1 cut(s) 607
MboI GATC 1 cut(s) 605
MboII GAAGA 3 cut(s) 50, 194, 322
MlyI GAGTC 2 cut(s) 134, 439
MmeI TCCRAC 2 cut(s) 138, 506
MnlI CCTC 6 cut(s) 30, 72, 190, 195, 252, 574
MroXI GAANNNNTTC 1 cut(s) 109
MspA1I CMGCKG 1 cut(s) 236
MspR9I CCNGG 2 cut(s) 352, 492
Mva1269I GAATGC 1 cut(s) 337
MvaI CCWGG 2 cut(s) 352, 492
MvnI CGCG 1 cut(s) 162
MwoI GCNNNNNNNGC 1 cut(s) 391
NcoI CCATGG 1 cut(s) 291
NdeII GATC 1 cut(s) 605
NlaIII CATG 4 cut(s) 29, 271, 295, 350
PctI GAATGC 1 cut(s) 337
PdmI GAANNNNTTC 1 cut(s) 109
PfeI GAWTC 1 cut(s) 244
PkrI GCNGC 4 cut(s) 235, 357, 482, 596
PleI GAGTC 2 cut(s) 134, 439
PpsI GAGTC 2 cut(s) 134, 439
PshAI GACNNNNGTC 1 cut(s) 92
Psp6I CCWGG 2 cut(s) 350, 490
PspGI CCWGG 2 cut(s) 350, 490
PvuII CAGCTG 1 cut(s) 236
SatI GCNGC 4 cut(s) 234, 356, 481, 595
Sau3AI GATC 1 cut(s) 605
SchI GAGTC 2 cut(s) 134, 439
ScrFI CCNGG 2 cut(s) 352, 492
SfaNI GCATC 3 cut(s) 329, 398, 604
SsiI CCGC 1 cut(s) 160
SspMI CTAG 2 cut(s) 405, 432
StyD4I CCNGG 2 cut(s) 350, 490
StyI CCWWGG 1 cut(s) 291
TaaI ACNGT 1 cut(s) 227
TaiI ACGT 1 cut(s) 96
TaqI TCGA 1 cut(s) 589
TaqII GACCGA 1 cut(s) 104
TfiI GAWTC 1 cut(s) 244
TseI GCWGC 4 cut(s) 233, 355, 480, 594
TspDTI ATGAA 1 cut(s) 523
TspGWI ACGGA 2 cut(s) 146, 170
XmnI GAANNNNTTC 1 cut(s) 109
XspI CTAG 2 cut(s) 405, 432
ZraI GACGTC 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.