FvH4_7g29600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
OG0001501
Physical Location & Seq
Reverse (-)
21733945 .. 21736099
2155 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g29600.t1

Sequence Viewer

Length: 642 bp
ATGGAAGACCCAAAATCGAAACGTGTTGAGAGCAGAAAGCCACAGATGACAACAACAATGGCACCGCCACATGGAACAATCCCACCTCAAAAACCCACTTGTCTTGCTCACACCCAGATGAACTACACCGACGTCAAGAAACGCAAGCTTTCCAACACCACCATGGAGAAAGACTCCCCCTCCTTCAAAATCCGCGCTCTCCTTCAACAAATTCGTCCCCATTTTATTGAGATTCTTCGAACACCTGATTTTCGGAATTCTAAAGCAGCTGATGAGATTCAGAAACAGGTGAAGCTTCTCATGGCGCTAAACAACCAGATGGCCATGGATACAGGAACACAGAAGAAGTTTGCATGGACACATGAACAACATTCACTCCATAACAGGGTGTGTGCGAAAGAAAACGAAGATGAGTTACCAACACAGCCGGTTCAACGTAGATGCTCTGTTGATAAACAACTGCCCGGTGCACAATGGACTAATTTTATCCCAGAGAAGAAAGCATTTGTTAGCAGCCAGCTACCGCGAAGCTACATTGTGGGTGGTTCGAATTTTGGTTGGAACTTCATCACATTTTCCGGCAGTAAACCAGTGTATTATGGTGTAACAAAGGAGGCATATCGAAGCAGTCACATTAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

214

Amino Acids

24.49

Weight (kDa)

9.84

Isoelectric Point (pI)

42.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 135
AccB1I GGYRCC 1 cut(s) 61
AccII CGCG 2 cut(s) 195, 526
AciI CCGC 3 cut(s) 65, 193, 524
AcoI YGGCCR 1 cut(s) 321
AcsI RAATTY 3 cut(s) 210, 256, 550
AcyI GRCGYC 1 cut(s) 132
AfiI CCNNNNNNNGG 2 cut(s) 71, 385
AflIII ACRYGT 1 cut(s) 22
AgsI TTSAA 3 cut(s) 187, 206, 434
AluBI AGCT 5 cut(s) 148, 269, 295, 520, 531
AluI AGCT 5 cut(s) 148, 269, 295, 520, 531
Alw21I GWGCWC 1 cut(s) 472
Alw44I GTGCAC 1 cut(s) 468
AoxI GGCC 1 cut(s) 321
ApaLI GTGCAC 1 cut(s) 468
ApeKI GCWGC 2 cut(s) 266, 513
ApoI RAATTY 3 cut(s) 210, 256, 550
AspLEI GCGC 2 cut(s) 197, 307
AsuC2I CCSGG 1 cut(s) 465
AsuHPI GGTGA 1 cut(s) 301
AsuII TTCGAA 2 cut(s) 238, 548
BaeGI GKGCMC 1 cut(s) 472
BalI TGGCCA 1 cut(s) 323
BanI GGYRCC 1 cut(s) 61
BarI GAAGNNNNNNTAC 2 cut(s) 399, 431
BbsI GAAGAC 1 cut(s) 12
Bbv12I GWGCWC 1 cut(s) 472
BbvI GCAGC 2 cut(s) 278, 525
BccI CCATC 1 cut(s) 313
BciVI GTATCC 1 cut(s) 322
BcnI CCSGG 1 cut(s) 465
BfoI RGCGCY 1 cut(s) 308
BfuI GTATCC 1 cut(s) 322
BisI GCNGC 2 cut(s) 267, 514
BlsI GCNGC 2 cut(s) 268, 515
Bme1390I CCNGG 1 cut(s) 465
BmiI GGNNCC 1 cut(s) 63
BmrFI CCNGG 1 cut(s) 465
BmsI GCATC 1 cut(s) 431
BpiI GAAGAC 1 cut(s) 12
BplI GAGNNNNNCTC 2 cut(s) 158, 190
Bpu14I TTCGAA 2 cut(s) 238, 548
BpuMI CCSGG 1 cut(s) 465
BsaHI GRCGYC 1 cut(s) 132
BsaJI CCNNGG 2 cut(s) 162, 324
BsaXI ACNNNNNCTCC 4 cut(s) 164, 194, 360, 390
Bsc4I CCNNNNNNNGG 2 cut(s) 71, 385
Bse118I RCCGGY 1 cut(s) 427
Bse1I ACTGG 1 cut(s) 590
BseDI CCNNGG 2 cut(s) 162, 324
BseLI CCNNNNNNNGG 2 cut(s) 71, 385
BseNI ACTGG 1 cut(s) 590
BseSI GKGCMC 1 cut(s) 472
BseXI GCAGC 2 cut(s) 278, 525
Bsh1236I CGCG 2 cut(s) 195, 526
BshFI GGCC 1 cut(s) 323
BshNI GGYRCC 1 cut(s) 61
BsiHKAI GWGCWC 1 cut(s) 472
BsiSI CCGG 3 cut(s) 428, 465, 579
BslFI GGGAC 1 cut(s) 201
BslI CCNNNNNNNGG 2 cut(s) 71, 385
BsmFI GGGAC 1 cut(s) 201
BsnI GGCC 1 cut(s) 323
Bsp119I TTCGAA 2 cut(s) 238, 548
Bsp1286I GDGCHC 1 cut(s) 472
Bsp19I CCATGG 2 cut(s) 162, 324
BspACI CCGC 3 cut(s) 65, 193, 524
BspANI GGCC 1 cut(s) 323
BspFNI CGCG 2 cut(s) 195, 526
BspLI GGNNCC 1 cut(s) 63
BspT104I TTCGAA 2 cut(s) 238, 548
BspT107I GGYRCC 1 cut(s) 61
BsrFI RCCGGY 1 cut(s) 427
BsrI ACTGG 1 cut(s) 590
BssAI RCCGGY 1 cut(s) 427
BssECI CCNNGG 2 cut(s) 162, 324
BssNI GRCGYC 1 cut(s) 132
BssT1I CCWWGG 2 cut(s) 162, 324
BstACI GRCGYC 1 cut(s) 132
BstBI TTCGAA 2 cut(s) 238, 548
BstC8I GCNNGC 2 cut(s) 146, 518
BstDSI CCRYGG 2 cut(s) 162, 324
BstFNI CGCG 2 cut(s) 195, 526
BstH2I RGCGCY 1 cut(s) 308
BstHHI GCGC 2 cut(s) 197, 307
BstSCI CCNGG 1 cut(s) 463
BstSLI GKGCMC 1 cut(s) 472
BstUI CGCG 2 cut(s) 195, 526
BstV1I GCAGC 2 cut(s) 278, 525
BstV2I GAAGAC 1 cut(s) 12
BsuI GTATCC 1 cut(s) 322
BsuRI GGCC 1 cut(s) 323
BtgI CCRYGG 2 cut(s) 162, 324
BtsIMutI CAGTG 1 cut(s) 597
Cac8I GCNNGC 2 cut(s) 146, 518
CfoI GCGC 2 cut(s) 197, 307
Cfr10I RCCGGY 1 cut(s) 427
CspCI CAANNNNNGTGG 2 cut(s) 85, 120
CviAII CATG 6 cut(s) 71, 163, 301, 325, 354, 362
CviJI RGCY 9 cut(s) 40, 148, 269, 295, 323, 427, 516, 520, 531
CviKI_1 RGCY 9 cut(s) 40, 148, 269, 295, 323, 427, 516, 520, 531
EaeI YGGCCR 1 cut(s) 321
Eco130I CCWWGG 2 cut(s) 162, 324
EcoRI GAATTC 1 cut(s) 256
EcoT14I CCWWGG 2 cut(s) 162, 324
ErhI CCWWGG 2 cut(s) 162, 324
FaeI CATG 6 cut(s) 74, 166, 304, 328, 357, 365
FaiI YATR 9 cut(s) 72, 164, 302, 326, 355, 363, 381, 600, 619
FaqI GGGAC 1 cut(s) 201
FatI CATG 6 cut(s) 70, 162, 300, 324, 353, 361
Fnu4HI GCNGC 2 cut(s) 267, 514
Fsp4HI GCNGC 2 cut(s) 267, 514
GlaI GCGC 2 cut(s) 196, 306
GluI GCNGC 2 cut(s) 267, 514
HaeII RGCGCY 1 cut(s) 308
HaeIII GGCC 1 cut(s) 323
HapII CCGG 3 cut(s) 428, 465, 579
HhaI GCGC 2 cut(s) 197, 307
Hin1I GRCGYC 1 cut(s) 132
Hin1II CATG 6 cut(s) 74, 166, 304, 328, 357, 365
Hin6I GCGC 2 cut(s) 195, 305
HinP1I GCGC 2 cut(s) 195, 305
HindIII AAGCTT 2 cut(s) 146, 293
HinfI GANTC 3 cut(s) 173, 232, 277
HpaII CCGG 3 cut(s) 428, 465, 579
HphI GGTGA 1 cut(s) 301
Hpy166II GTNNAC 2 cut(s) 470, 587
Hpy188I TCNGA 2 cut(s) 255, 282
Hpy188III TCNNGA 1 cut(s) 136
Hpy8I GTNNAC 2 cut(s) 470, 587
Hpy99I CGWCG 1 cut(s) 134
HpyAV CCTTC 2 cut(s) 193, 212
HpyCH4IV ACGT 3 cut(s) 22, 132, 436
HpyCH4V TGCA 2 cut(s) 353, 470
HpySE526I ACGT 3 cut(s) 22, 132, 436
Hsp92I GRCGYC 1 cut(s) 132
Hsp92II CATG 6 cut(s) 74, 166, 304, 328, 357, 365
HspAI GCGC 2 cut(s) 195, 305
Lsp1109I GCAGC 2 cut(s) 278, 525
LweI GCATC 1 cut(s) 431
MaeII ACGT 3 cut(s) 22, 132, 436
MaeIII GTNAC 3 cut(s) 414, 604, 629
MboII GAAGA 5 cut(s) 17, 227, 355, 419, 508
MhlI GDGCHC 1 cut(s) 472
MlsI TGGCCA 1 cut(s) 323
MluCI AATT 4 cut(s) 210, 256, 481, 550
MluNI TGGCCA 1 cut(s) 323
MlyI GAGTC 1 cut(s) 167
MmeI TCCRAC 2 cut(s) 177, 539
MnlI CCTC 3 cut(s) 96, 190, 607
Mox20I TGGCCA 1 cut(s) 323
MscI TGGCCA 1 cut(s) 323
MslI CAYNNNNRTG 2 cut(s) 116, 161
Msp20I TGGCCA 1 cut(s) 323
MspA1I CMGCKG 1 cut(s) 269
MspI CCGG 3 cut(s) 428, 465, 579
MspR9I CCNGG 1 cut(s) 465
MvnI CGCG 2 cut(s) 195, 526
NciI CCSGG 1 cut(s) 465
NcoI CCATGG 2 cut(s) 162, 324
NlaIII CATG 6 cut(s) 74, 166, 304, 328, 357, 365
NlaIV GGNNCC 1 cut(s) 63
NmuCI GTSAC 1 cut(s) 629
NspV TTCGAA 2 cut(s) 238, 548
PfeI GAWTC 2 cut(s) 232, 277
PkrI GCNGC 2 cut(s) 268, 515
PleI GAGTC 1 cut(s) 167
PpsI GAGTC 1 cut(s) 167
PspN4I GGNNCC 1 cut(s) 63
PvuII CAGCTG 1 cut(s) 269
RseI CAYNNNNRTG 2 cut(s) 116, 161
SatI GCNGC 2 cut(s) 267, 514
SchI GAGTC 1 cut(s) 167
ScrFI CCNGG 1 cut(s) 465
SduI GDGCHC 1 cut(s) 472
SfaNI GCATC 1 cut(s) 431
SfuI TTCGAA 2 cut(s) 238, 548
SmiMI CAYNNNNRTG 2 cut(s) 116, 161
Sse9I AATT 4 cut(s) 210, 256, 481, 550
SsiI CCGC 3 cut(s) 65, 193, 524
StyD4I CCNGG 1 cut(s) 463
StyI CCWWGG 2 cut(s) 162, 324
TaiI ACGT 3 cut(s) 25, 135, 439
TaqI TCGA 4 cut(s) 17, 238, 548, 622
TasI AATT 4 cut(s) 210, 256, 481, 550
TfiI GAWTC 2 cut(s) 232, 277
TscAI CASTG 1 cut(s) 597
TseFI GTSAC 1 cut(s) 629
TseI GCWGC 2 cut(s) 266, 513
Tsp45I GTSAC 1 cut(s) 629
TspDTI ATGAA 3 cut(s) 134, 378, 556
TspRI CASTG 1 cut(s) 597
VneI GTGCAC 1 cut(s) 468
XapI RAATTY 3 cut(s) 210, 256, 550
XcmI CCANNNNNNNNNTGG 1 cut(s) 160
ZraI GACGTC 1 cut(s) 133
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.