Rorug01G0244700

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001501
Physical Location & Seq
Reverse (-)
35064210 .. 35066918
2709 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0244700.1

Sequence Viewer

Length: 903 bp
ATGTGGGCGTCTGTCACCCATAGCCACCTTCAAATTCTACGCTACTGTCGTGCTTTCCTTCCACGTAGCCCTAAACCTCTCCCTCTTCTTTTCCTTCCCAGCCTAACGTTCATGGACAACAGAACCACCACCACCACCACCAATTCCTTCGCTCCTTTTGCCCGTAATAACAGAAGTGGTGATGGTAGAGGAGGAGGCTGGGAGGTGAAAGATGAGGGAGAGAGGTCGAGAGGTCGCGGCGGAGGAGCAAGGGGCCGTGGTGGTGGCTCTGGCAAAGATAGAGTTGATGCACTCGGTAGATTATTGACACGTATATTGCGGCATATGGCTTCTGAGTTGAATTTGGATATGTGGAGTGATGGATTTGTGAGGGTTAATGATATTTTAAAGCTGAACTTGAAGACATTTGCTAATATTCCATTGAGCTCACATACTGTTGATGAGATCAAGGAGGCTGTCAGAAGGGATAATAAGCAGCGTTTCAGCCTCTTGGAAGAAAATGGGGAACTTTTGATACGTGCAAACCAAGGCCACTCAACAACGGTAGTTGAAACCGAAAGGTTATTAAAGCCAATCCTTTCATCTGAAGAAGTTCCAGTATGCGTGCATGGAACTTATAGGAAGAATTTGGATTCAATATTAGAATCTGGTCTGAAGTGCATGACGAGATTGCATGTACACTTTGCAAGTGGCTTGCCAACAGATGGGGAAGTGATCAGCGGTATGAGACGGGATGTTAACATTTTGATCTTTCTTGATGTCAGAAAAGCTTTAGCTGAGGGAATGAAGTTCTACATTTCAGACAACAAGGTGATCTTGACTGAAGGCTTTGATGGTGTTGTTTCAGTCAAGTACTTCGAGAAAATAGAATCGTGGCCTGGTAGAAAGCCCATAGCTTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

300

Amino Acids

33.61

Weight (kDa)

9.58

Isoelectric Point (pI)

43.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PTS_2-RNA PF01885 96 - 276 4.1e-57 RNA 2'-phosphotransferase, Tpt1 / KptA family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 704
AccII CGCG 1 cut(s) 237
AciI CCGC 4 cut(s) 237, 240, 319, 720
AclI AACGTT 1 cut(s) 107
AcsI RAATTY 3 cut(s) 33, 340, 625
AcuI CTGAAG 3 cut(s) 606, 674, 843
AcyI GRCGYC 1 cut(s) 8
AfaI GTAC 2 cut(s) 678, 854
AfiI CCNNNNNNNGG 1 cut(s) 704
AflIII ACRYGT 1 cut(s) 308
AgsI TTSAA 5 cut(s) 32, 340, 400, 551, 636
AjnI CCWGG 1 cut(s) 877
AluBI AGCT 5 cut(s) 391, 426, 770, 776, 896
AluI AGCT 5 cut(s) 391, 426, 770, 776, 896
Alw21I GWGCWC 1 cut(s) 428
Alw26I GTCTC 1 cut(s) 721
AoxI GGCC 3 cut(s) 253, 529, 875
ApeKI GCWGC 1 cut(s) 475
ApoI RAATTY 3 cut(s) 33, 340, 625
Asp700I GAANNNNTTC 1 cut(s) 591
AspS9I GGNCC 1 cut(s) 253
AsuHPI GGTGA 4 cut(s) 7, 191, 217, 823
BanII GRGCYC 1 cut(s) 428
BbsI GAAGAC 1 cut(s) 407
Bbv12I GWGCWC 1 cut(s) 428
BbvCI CCTCAGC 1 cut(s) 777
BbvI GCAGC 1 cut(s) 487
BccI CCATC 4 cut(s) 176, 353, 698, 827
BceAI ACGGC 1 cut(s) 240
BciT130I CCWGG 1 cut(s) 879
BclI TGATCA 1 cut(s) 714
BcoDI GTCTC 1 cut(s) 721
BisI GCNGC 3 cut(s) 238, 320, 476
BlsI GCNGC 3 cut(s) 239, 321, 477
BmcAI AGTACT 1 cut(s) 854
Bme1390I CCNGG 1 cut(s) 879
BmgT120I GGNCC 1 cut(s) 253
BmiI GGNNCC 1 cut(s) 254
BmrFI CCNGG 1 cut(s) 879
BmsI GCATC 1 cut(s) 277
BpiI GAAGAC 1 cut(s) 407
Bpu10I CCTNAGC 1 cut(s) 777
BsaAI YACGTR 3 cut(s) 65, 311, 518
BsaHI GRCGYC 1 cut(s) 8
BsaJI CCNNGG 2 cut(s) 256, 526
Bsc4I CCNNNNNNNGG 1 cut(s) 704
Bse1I ACTGG 1 cut(s) 596
BseBI CCWGG 1 cut(s) 879
BseDI CCNNGG 2 cut(s) 256, 526
BseGI GGATG 1 cut(s) 739
BseLI CCNNNNNNNGG 1 cut(s) 704
BseMII CTCAG 2 cut(s) 324, 768
BseNI ACTGG 1 cut(s) 596
BseRI GAGGAG 3 cut(s) 204, 207, 258
BseXI GCAGC 1 cut(s) 487
BseYI CCCAGC 2 cut(s) 98, 198
Bsh1236I CGCG 1 cut(s) 237
BshFI GGCC 3 cut(s) 255, 531, 877
BsiHKAI GWGCWC 1 cut(s) 428
BslI CCNNNNNNNGG 1 cut(s) 704
BsmAI GTCTC 1 cut(s) 721
BsmBI CGTCTC 1 cut(s) 721
BsnI GGCC 3 cut(s) 255, 531, 877
Bsp1286I GDGCHC 1 cut(s) 428
Bsp1407I TGTACA 1 cut(s) 676
Bsp143I GATC 4 cut(s) 444, 714, 747, 813
BspACI CCGC 4 cut(s) 237, 240, 319, 720
BspANI GGCC 3 cut(s) 255, 531, 877
BspCNI CTCAG 2 cut(s) 325, 769
BspFNI CGCG 1 cut(s) 237
BspLI GGNNCC 1 cut(s) 254
BsrGI TGTACA 1 cut(s) 676
BsrI ACTGG 1 cut(s) 596
BssECI CCNNGG 2 cut(s) 256, 526
BssMI GATC 4 cut(s) 444, 714, 747, 813
BssNI GRCGYC 1 cut(s) 8
BssT1I CCWWGG 1 cut(s) 526
Bst2UI CCWGG 1 cut(s) 879
Bst4CI ACNGT 3 cut(s) 47, 436, 544
Bst6I CTCTTC 1 cut(s) 90
BstACI GRCGYC 1 cut(s) 8
BstAUI TGTACA 1 cut(s) 676
BstBAI YACGTR 3 cut(s) 65, 311, 518
BstC8I GCNNGC 2 cut(s) 605, 695
BstDEI CTNAG 2 cut(s) 333, 777
BstDSI CCRYGG 1 cut(s) 256
BstF5I GGATG 1 cut(s) 739
BstFNI CGCG 1 cut(s) 237
BstKTI GATC 4 cut(s) 447, 717, 750, 816
BstMAI GTCTC 1 cut(s) 721
BstMBI GATC 4 cut(s) 444, 714, 747, 813
BstMWI GCNNNNNNNGC 1 cut(s) 158
BstNI CCWGG 1 cut(s) 879
BstNSI RCATGY 1 cut(s) 677
BstSCI CCNGG 1 cut(s) 877
BstUI CGCG 1 cut(s) 237
BstV1I GCAGC 1 cut(s) 487
BstV2I GAAGAC 1 cut(s) 407
BsuRI GGCC 3 cut(s) 255, 531, 877
BtgI CCRYGG 1 cut(s) 256
BtsCI GGATG 1 cut(s) 739
Cac8I GCNNGC 2 cut(s) 605, 695
Cfr13I GGNCC 1 cut(s) 253
Csp6I GTAC 2 cut(s) 677, 853
CviAII CATG 4 cut(s) 112, 608, 661, 674
CviQI GTAC 2 cut(s) 677, 853
DdeI CTNAG 2 cut(s) 333, 777
DpnI GATC 4 cut(s) 446, 716, 749, 815
DpnII GATC 4 cut(s) 444, 714, 747, 813
DraI TTTAAA 1 cut(s) 387
Eam1104I CTCTTC 1 cut(s) 90
EarI CTCTTC 1 cut(s) 90
EciI GGCGGA 1 cut(s) 255
Ecl136II GAGCTC 1 cut(s) 426
Eco130I CCWWGG 1 cut(s) 526
Eco24I GRGCYC 1 cut(s) 428
Eco53kI GAGCTC 1 cut(s) 426
Eco57I CTGAAG 3 cut(s) 606, 674, 843
EcoICRI GAGCTC 1 cut(s) 426
EcoRII CCWGG 1 cut(s) 877
EcoT14I CCWWGG 1 cut(s) 526
EcoT38I GRGCYC 1 cut(s) 428
ErhI CCWWGG 1 cut(s) 526
Esp3I CGTCTC 1 cut(s) 721
FaeI CATG 4 cut(s) 115, 611, 664, 677
FalI AAGNNNNNCTT 4 cut(s) 380, 412, 800, 832
FatI CATG 4 cut(s) 111, 607, 660, 673
FauNDI CATATG 1 cut(s) 324
FbaI TGATCA 1 cut(s) 714
Fnu4HI GCNGC 3 cut(s) 238, 320, 476
FokI GGATG 1 cut(s) 746
FriOI GRGCYC 1 cut(s) 428
Fsp4HI GCNGC 3 cut(s) 238, 320, 476
GluI GCNGC 3 cut(s) 238, 320, 476
GsaI CCCAGC 2 cut(s) 102, 202
HaeIII GGCC 3 cut(s) 255, 531, 877
Hin1I GRCGYC 1 cut(s) 8
Hin1II CATG 4 cut(s) 115, 611, 664, 677
HincII GTYRAC 1 cut(s) 739
HindII GTYRAC 1 cut(s) 739
HindIII AAGCTT 1 cut(s) 768
HinfI GANTC 3 cut(s) 632, 644, 869
HpaI GTTAAC 1 cut(s) 739
HphI GGTGA 4 cut(s) 7, 191, 217, 823
Hpy166II GTNNAC 2 cut(s) 679, 739
Hpy188I TCNGA 6 cut(s) 334, 461, 586, 654, 764, 802
Hpy188III TCNNGA 4 cut(s) 228, 755, 817, 859
Hpy8I GTNNAC 2 cut(s) 679, 739
HpyAV CCTTC 6 cut(s) 38, 68, 104, 157, 456, 818
HpyCH4III ACNGT 3 cut(s) 47, 436, 544
HpyCH4IV ACGT 4 cut(s) 64, 107, 310, 517
HpyCH4V TGCA 6 cut(s) 290, 521, 607, 660, 673, 686
HpyF10VI GCNNNNNNNGC 1 cut(s) 158
HpyF3I CTNAG 2 cut(s) 333, 777
HpySE526I ACGT 4 cut(s) 64, 107, 310, 517
Hsp92I GRCGYC 1 cut(s) 8
Hsp92II CATG 4 cut(s) 115, 611, 664, 677
Ksp22I TGATCA 1 cut(s) 714
KspAI GTTAAC 1 cut(s) 739
Kzo9I GATC 4 cut(s) 444, 714, 747, 813
LmnI GCTCC 2 cut(s) 157, 245
LpnPI CCDG 7 cut(s) 112, 184, 255, 609, 633, 864, 891
Lsp1109I GCAGC 1 cut(s) 487
LweI GCATC 1 cut(s) 277
MaeII ACGT 4 cut(s) 64, 107, 310, 517
MaeIII GTNAC 1 cut(s) 13
MalI GATC 4 cut(s) 446, 716, 749, 815
MboI GATC 4 cut(s) 444, 714, 747, 813
MboII GAAGA 5 cut(s) 77, 412, 506, 599, 634
MhlI GDGCHC 1 cut(s) 428
MluCI AATT 4 cut(s) 33, 142, 340, 625
MroXI GAANNNNTTC 1 cut(s) 591
MseI TTAA 4 cut(s) 375, 386, 566, 738
MspA1I CMGCKG 1 cut(s) 720
MspR9I CCNGG 1 cut(s) 879
MvaI CCWGG 1 cut(s) 879
MvnI CGCG 1 cut(s) 237
MwoI GCNNNNNNNGC 1 cut(s) 158
NdeI CATATG 1 cut(s) 324
NdeII GATC 4 cut(s) 444, 714, 747, 813
NlaIII CATG 4 cut(s) 115, 611, 664, 677
NlaIV GGNNCC 1 cut(s) 254
NmuCI GTSAC 1 cut(s) 13
NspI RCATGY 1 cut(s) 677
PcsI WCGNNNNNNNCGW 1 cut(s) 46
PdmI GAANNNNTTC 1 cut(s) 591
PfeI GAWTC 3 cut(s) 632, 644, 869
PflMI CCANNNNNTGG 1 cut(s) 704
PkrI GCNGC 3 cut(s) 239, 321, 477
Ppu21I YACGTR 3 cut(s) 65, 311, 518
Psp124BI GAGCTC 1 cut(s) 428
Psp1406I AACGTT 1 cut(s) 107
Psp6I CCWGG 1 cut(s) 877
PspFI CCCAGC 2 cut(s) 98, 198
PspGI CCWGG 1 cut(s) 877
PspN4I GGNNCC 1 cut(s) 254
PspPI GGNCC 1 cut(s) 253
PsrI GAACNNNNNNTAC 2 cut(s) 498, 530
RsaI GTAC 2 cut(s) 678, 854
RsaNI GTAC 2 cut(s) 677, 853
SacI GAGCTC 1 cut(s) 428
SaqAI TTAA 4 cut(s) 375, 386, 566, 738
SatI GCNGC 3 cut(s) 238, 320, 476
Sau3AI GATC 4 cut(s) 444, 714, 747, 813
Sau96I GGNCC 1 cut(s) 253
ScaI AGTACT 1 cut(s) 854
ScrFI CCNGG 1 cut(s) 879
SduI GDGCHC 1 cut(s) 428
SfaNI GCATC 1 cut(s) 277
Sse9I AATT 4 cut(s) 33, 142, 340, 625
SsiI CCGC 4 cut(s) 237, 240, 319, 720
SspI AATATT 2 cut(s) 415, 639
SstI GAGCTC 1 cut(s) 428
StyD4I CCNGG 1 cut(s) 877
StyI CCWWGG 1 cut(s) 526
TaaI ACNGT 3 cut(s) 47, 436, 544
TaiI ACGT 4 cut(s) 67, 110, 313, 520
TaqI TCGA 2 cut(s) 227, 858
TasI AATT 4 cut(s) 33, 142, 340, 625
TatI WGTACW 2 cut(s) 676, 852
TauI GCSGC 2 cut(s) 240, 322
TfiI GAWTC 3 cut(s) 632, 644, 869
Tru1I TTAA 4 cut(s) 375, 386, 566, 738
Tru9I TTAA 4 cut(s) 375, 386, 566, 738
TseFI GTSAC 1 cut(s) 13
TseI GCWGC 1 cut(s) 475
Tsp45I GTSAC 1 cut(s) 13
TspDTI ATGAA 3 cut(s) 100, 570, 800
Van91I CCANNNNNTGG 1 cut(s) 704
XapI RAATTY 3 cut(s) 33, 340, 625
XceI RCATGY 1 cut(s) 677
XmnI GAANNNNTTC 1 cut(s) 591
ZrmI AGTACT 1 cut(s) 854
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.