Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0001501

Physical Location & Seq

Genomic Coordinates Reverse (-)

29810792 .. 29812566

Gene Structure 1775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1202200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 831 bp

ATGAGAATTATAGGACACTTTTCTTTTCGACACCTTGCGGAAAGGGTCACCGCTTTCGTCAATCTCGAGTGGAAAGAAAAGAAATCCATGGAAGTAGCAAAACCAAAAGGTGTTGAAATCGCAAAGGGACACGTAACAGCAAGGCCACATGGCGCCCCACGACCACCGAGCTCCGCCCAACAAAAACCCAAACCCAAATCCACCACCACTTCCTCTCTTCCTCCTCGCCGCAAGAAACGAAAGCCCATCACCAATTTCAACATGGACCTCCACCTCCACCACCACCACCATCACTCCCCACATTTCAAAATTTGCGCTCTCGTTCATCGGCTTCGTCCCCGATTTATTGAGATTCTTCGAACACCGGATTTTCGGAATTGTAAAGCGGCTGATGAAATTCGAAAGGAACTGAAGCTTTTGATGGAGCTACACAAACAGATGGCCAAGGATACCGGCACACAGAGGAAGTTTGTGCCAGAACATCAGCATCCTTCACGTGGCAGCGAGCTTGCGAAAGAAAACCAAGATGGGAAAGGGCCGCAGCAGCTTCAACCAAGGTGCTCAGTTCAAAATTCTGTGCAAGGTAACAGTACTCGACCGGCTCCTCTCAGCGCAAATAAGAAACCAGTTGATTTCAAACTACAGGGAAGCTACATTGTGGGTGGTTCAGCTTTTGGTTGGAACTTCATCACATTTTCCGCAGGCAGCACTAAACCAGTCTATTATGGGGTGACCAAGGAGGCATATCGAAGCGGCAACGATCGATTGGGAGACGCTAATCTGGCTATAACGACCGAGTTTTCTGATTGTACATCGTCCATAGCAGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

277

Amino Acids

31.09

Weight (kDa)

10.12

Isoelectric Point (pI)

32.94

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01730
fragaria_vesca	FvH4_7g14150 FvH4_7g29600
malus_domestica	MD01G1056800.v1.1 MD01G1057500.v1.1 MD01G1202200.v1.1 MD07G1139200.v1.1
prunus_persica	Prupe.2G167900_v2.0.a1 Prupe.2G295600_v2.0.a1 Prupe.2G295600_v2.0.a1
pyrus_communis	pycom01g08560 pycom01g08690 pycom01g08730 pycom01g21180 pycom07g13620 pycom07g13660 pycom07g13690 pycom07g13710 pycom07g13950
rosa_chinensis	RchiOBHm_Chr1g0354801 RchiOBHm_Chr1g0355051 RchiOBHm_Chr1g0377581
rosa_laevigata	RLG00000026515 RLG00000028180
rosa_multiflora	Rmu_sc0002832.1_g000009 Rmu_sc0003115.1_g000028 Rmu_sc0003940.1_g000007 Rmu_sc0012587.1_g000007 Rmu_sc0016725.1_g000003
rosa_roxburghii	Rroxscaffold_4G00281220 Rroxscaffold_4G00300710
rosa_rugosa	Rorug01G0244700 Rorug01G0403600
rosa_samantha	Rh1AG255700 Rh1AG257000 Rh1AG429200 Rh1BG226300 Rh1BG380100 Rh1CG238800 Rh1CG239100 Rh1CG240600 Rh1CG394300 Rh1DG253900 Rh1DG411300
rosa_wichuraiana	Rw0G011190 Rw1G022380 Rw1G022430 Rw1G022580 Rw1G022650 Rw1G022660 Rw1G036960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	152
AciI	CCGC	8 cut(s)	38, 51, 174, 229, 386, 539, 699, 753
AcoI	YGGCCR	1 cut(s)	441
AcsI	RAATTY	3 cut(s)	309, 396, 571
AcuI	CTGAAG	1 cut(s)	431
AcvI	CACGTG	1 cut(s)	497
AcyI	GRCGYC	1 cut(s)	153
AfaI	GTAC	2 cut(s)	592, 811
AfiI	CCNNNNNNNGG	1 cut(s)	497
AflIII	ACRYGT	1 cut(s)	130
AgsI	TTSAA	6 cut(s)	116, 259, 307, 551, 569, 637
AluBI	AGCT	7 cut(s)	171, 415, 427, 508, 547, 651, 671
AluI	AGCT	7 cut(s)	171, 415, 427, 508, 547, 651, 671
Alw21I	GWGCWC	2 cut(s)	173, 563
Alw26I	GTCTC	1 cut(s)	765
Ama87I	CYCGRG	1 cut(s)	65
AoxI	GGCC	3 cut(s)	143, 441, 536
ApeKI	GCWGC	4 cut(s)	501, 541, 544, 705
ApoI	RAATTY	3 cut(s)	309, 396, 571
AspLEI	GCGC	3 cut(s)	155, 317, 614
AspS9I	GGNCC	2 cut(s)	265, 536
AsuHPI	GGTGA	3 cut(s)	40, 241, 742
AsuII	TTCGAA	2 cut(s)	358, 400
AvaI	CYCGRG	1 cut(s)	65
AvaII	GGWCC	1 cut(s)	265
BalI	TGGCCA	1 cut(s)	443
BanI	GGYRCC	1 cut(s)	152
BanII	GRGCYC	1 cut(s)	173
BbrPI	CACGTG	1 cut(s)	497
Bbv12I	GWGCWC	2 cut(s)	173, 563
BbvI	GCAGC	4 cut(s)	513, 553, 556, 717
BccI	CCATC	5 cut(s)	254, 297, 415, 433, 521
BciVI	GTATCC	1 cut(s)	442
BcoDI	GTCTC	1 cut(s)	765
BfmI	CTRYAG	1 cut(s)	641
BfoI	RGCGCY	1 cut(s)	156
BfuI	GTATCC	1 cut(s)	442
BisI	GCNGC	8 cut(s)	229, 387, 502, 539, 542, 545, 706, 754
BlsI	GCNGC	8 cut(s)	230, 388, 503, 540, 543, 546, 707, 755
BmcAI	AGTACT	1 cut(s)	592
Bme18I	GGWCC	1 cut(s)	265
BmeT110I	CYCGRG	1 cut(s)	65
BmgT120I	GGNCC	2 cut(s)	265, 536
BmiI	GGNNCC	2 cut(s)	154, 603
BmsI	GCATC	1 cut(s)	496
Bpu14I	TTCGAA	2 cut(s)	358, 400
Bsa29I	ATCGAT	1 cut(s)	763
BsaAI	YACGTR	2 cut(s)	133, 497
BsaHI	GRCGYC	1 cut(s)	153
BsaJI	CCNNGG	4 cut(s)	87, 444, 554, 735
BsaWI	WCCGGW	1 cut(s)	364
BsaXI	ACNNNNNCTCC	2 cut(s)	278, 308
Bsc4I	CCNNNNNNNGG	1 cut(s)	497
Bse118I	RCCGGY	2 cut(s)	452, 598
Bse1I	ACTGG	2 cut(s)	626, 716
BseCI	ATCGAT	1 cut(s)	763
BseDI	CCNNGG	4 cut(s)	87, 444, 554, 735
BseGI	GGATG	1 cut(s)	487
BseLI	CCNNNNNNNGG	1 cut(s)	497
BseMII	CTCAG	2 cut(s)	576, 622
BseNI	ACTGG	2 cut(s)	626, 716
BseRI	GAGGAG	2 cut(s)	213, 594
BseXI	GCAGC	4 cut(s)	513, 553, 556, 717
Bsh1285I	CGRYCG	3 cut(s)	599, 763, 795
BshFI	GGCC	3 cut(s)	145, 443, 538
BshNI	GGYRCC	1 cut(s)	152
BshVI	ATCGAT	1 cut(s)	763
BsiEI	CGRYCG	3 cut(s)	599, 763, 795
BsiHKAI	GWGCWC	2 cut(s)	173, 563
BsiHKCI	CYCGRG	1 cut(s)	65
BsiSI	CCGG	3 cut(s)	365, 453, 599
BslFI	GGGAC	2 cut(s)	141, 321
BslI	CCNNNNNNNGG	1 cut(s)	497
BsmAI	GTCTC	1 cut(s)	765
BsmBI	CGTCTC	1 cut(s)	765
BsmFI	GGGAC	2 cut(s)	141, 321
BsnI	GGCC	3 cut(s)	145, 443, 538
BsoBI	CYCGRG	1 cut(s)	65
Bsp119I	TTCGAA	2 cut(s)	358, 400
Bsp1286I	GDGCHC	2 cut(s)	173, 563
Bsp1407I	TGTACA	1 cut(s)	809
Bsp143I	GATC	1 cut(s)	760
Bsp19I	CCATGG	1 cut(s)	87
BspACI	CCGC	8 cut(s)	38, 51, 174, 229, 386, 539, 699, 753
BspANI	GGCC	3 cut(s)	145, 443, 538
BspCNI	CTCAG	2 cut(s)	575, 621
BspDI	ATCGAT	1 cut(s)	763
BspLI	GGNNCC	2 cut(s)	154, 603
BspT104I	TTCGAA	2 cut(s)	358, 400
BspT107I	GGYRCC	1 cut(s)	152
BsrFI	RCCGGY	2 cut(s)	452, 598
BsrGI	TGTACA	1 cut(s)	809
BsrI	ACTGG	2 cut(s)	626, 716
BssAI	RCCGGY	2 cut(s)	452, 598
BssECI	CCNNGG	4 cut(s)	87, 444, 554, 735
BssMI	GATC	1 cut(s)	760
BssNI	GRCGYC	1 cut(s)	153
BssT1I	CCWWGG	4 cut(s)	87, 444, 554, 735
Bst4CI	ACNGT	1 cut(s)	590
Bst6I	CTCTTC	1 cut(s)	222
BstACI	GRCGYC	1 cut(s)	153
BstAUI	TGTACA	1 cut(s)	809
BstBAI	YACGTR	2 cut(s)	133, 497
BstBI	TTCGAA	2 cut(s)	358, 400
BstC8I	GCNNGC	3 cut(s)	506, 510, 703
BstDEI	CTNAG	2 cut(s)	562, 608
BstDSI	CCRYGG	1 cut(s)	87
BstEII	GGTNACC	2 cut(s)	46, 730
BstF5I	GGATG	1 cut(s)	487
BstH2I	RGCGCY	1 cut(s)	156
BstHHI	GCGC	3 cut(s)	155, 317, 614
BstKTI	GATC	1 cut(s)	763
BstMAI	GTCTC	1 cut(s)	765
BstMBI	GATC	1 cut(s)	760
BstMCI	CGRYCG	3 cut(s)	599, 763, 795
BstMWI	GCNNNNNNNGC	2 cut(s)	544, 782
BstPI	GGTNACC	2 cut(s)	46, 730
BstSFI	CTRYAG	1 cut(s)	641
BstV1I	GCAGC	4 cut(s)	513, 553, 556, 717
Bsu15I	ATCGAT	1 cut(s)	763
BsuI	GTATCC	1 cut(s)	442
BsuRI	GGCC	3 cut(s)	145, 443, 538
BsuTUI	ATCGAT	1 cut(s)	763
BtgI	CCRYGG	1 cut(s)	87
BtsCI	GGATG	1 cut(s)	487
Cac8I	GCNNGC	3 cut(s)	506, 510, 703
CfoI	GCGC	3 cut(s)	155, 317, 614
Cfr10I	RCCGGY	2 cut(s)	452, 598
Cfr13I	GGNCC	2 cut(s)	265, 536
ClaI	ATCGAT	1 cut(s)	763
CseI	GACGC	1 cut(s)	782
Csp6I	GTAC	2 cut(s)	591, 810
CviAII	CATG	3 cut(s)	88, 149, 262
CviQI	GTAC	2 cut(s)	591, 810
DdeI	CTNAG	2 cut(s)	562, 608
DinI	GGCGCC	1 cut(s)	154
DpnI	GATC	1 cut(s)	762
DpnII	GATC	1 cut(s)	760
EaeI	YGGCCR	1 cut(s)	441
Eam1104I	CTCTTC	1 cut(s)	222
EarI	CTCTTC	1 cut(s)	222
EciI	GGCGGA	1 cut(s)	163
Ecl136II	GAGCTC	1 cut(s)	171
Eco130I	CCWWGG	4 cut(s)	87, 444, 554, 735
Eco24I	GRGCYC	1 cut(s)	173
Eco47I	GGWCC	1 cut(s)	265
Eco53kI	GAGCTC	1 cut(s)	171
Eco57I	CTGAAG	1 cut(s)	431
Eco72I	CACGTG	1 cut(s)	497
Eco88I	CYCGRG	1 cut(s)	65
Eco91I	GGTNACC	2 cut(s)	46, 730
EcoICRI	GAGCTC	1 cut(s)	171
EcoO65I	GGTNACC	2 cut(s)	46, 730
EcoT14I	CCWWGG	4 cut(s)	87, 444, 554, 735
EcoT38I	GRGCYC	1 cut(s)	173
EgeI	GGCGCC	1 cut(s)	154
EheI	GGCGCC	1 cut(s)	154
ErhI	CCWWGG	4 cut(s)	87, 444, 554, 735
Esp3I	CGTCTC	1 cut(s)	765
FaeI	CATG	3 cut(s)	91, 152, 265
FaiI	YATR	8 cut(s)	11, 89, 150, 263, 726, 745, 788, 821
FaqI	GGGAC	2 cut(s)	141, 321
FatI	CATG	3 cut(s)	87, 148, 261
Fnu4HI	GCNGC	8 cut(s)	229, 387, 502, 539, 542, 545, 706, 754
FokI	GGATG	1 cut(s)	474
FriOI	GRGCYC	1 cut(s)	173
Fsp4HI	GCNGC	8 cut(s)	229, 387, 502, 539, 542, 545, 706, 754
GlaI	GCGC	3 cut(s)	154, 316, 613
GluI	GCNGC	8 cut(s)	229, 387, 502, 539, 542, 545, 706, 754
HaeII	RGCGCY	1 cut(s)	156
HaeIII	GGCC	3 cut(s)	145, 443, 538
HapII	CCGG	3 cut(s)	365, 453, 599
HgaI	GACGC	1 cut(s)	782
HhaI	GCGC	3 cut(s)	155, 317, 614
Hin1I	GRCGYC	1 cut(s)	153
Hin1II	CATG	3 cut(s)	91, 152, 265
Hin6I	GCGC	3 cut(s)	153, 315, 612
HinP1I	GCGC	3 cut(s)	153, 315, 612
HindIII	AAGCTT	1 cut(s)	413
HinfI	GANTC	1 cut(s)	352
HpaII	CCGG	3 cut(s)	365, 453, 599
HphI	GGTGA	3 cut(s)	40, 241, 742
Hpy188I	TCNGA	2 cut(s)	375, 805
Hpy188III	TCNNGA	1 cut(s)	65
HpyAV	CCTTC	1 cut(s)	501
HpyCH4III	ACNGT	1 cut(s)	590
HpyCH4IV	ACGT	2 cut(s)	132, 496
HpyCH4V	TGCA	1 cut(s)	580
HpyF10VI	GCNNNNNNNGC	2 cut(s)	544, 782
HpyF3I	CTNAG	2 cut(s)	562, 608
HpySE526I	ACGT	2 cut(s)	132, 496
Hsp92I	GRCGYC	1 cut(s)	153
Hsp92II	CATG	3 cut(s)	91, 152, 265
HspAI	GCGC	3 cut(s)	153, 315, 612
KasI	GGCGCC	1 cut(s)	152
Kzo9I	GATC	1 cut(s)	760
LmnI	GCTCC	3 cut(s)	176, 424, 607
LpnPI	CCDG	9 cut(s)	378, 466, 489, 612, 629, 639, 687, 729, 767
Lsp1109I	GCAGC	4 cut(s)	513, 553, 556, 717
LweI	GCATC	1 cut(s)	496
MaeII	ACGT	2 cut(s)	132, 496
MaeIII	GTNAC	4 cut(s)	46, 133, 584, 730
MalI	GATC	1 cut(s)	762
MboI	GATC	1 cut(s)	760
MboII	GAAGA	2 cut(s)	209, 347
MhlI	GDGCHC	2 cut(s)	173, 563
MlsI	TGGCCA	1 cut(s)	443
MluCI	AATT	6 cut(s)	6, 253, 309, 376, 396, 571
MluNI	TGGCCA	1 cut(s)	443
Mly113I	GGCGCC	1 cut(s)	153
MmeI	TCCRAC	1 cut(s)	659
MnlI	CCTC	8 cut(s)	223, 231, 234, 278, 284, 456, 615, 733
Mox20I	TGGCCA	1 cut(s)	443
MscI	TGGCCA	1 cut(s)	443
Msp20I	TGGCCA	1 cut(s)	443
MspI	CCGG	3 cut(s)	365, 453, 599
MwoI	GCNNNNNNNGC	2 cut(s)	544, 782
NarI	GGCGCC	1 cut(s)	153
NcoI	CCATGG	1 cut(s)	87
NdeII	GATC	1 cut(s)	760
NlaIII	CATG	3 cut(s)	91, 152, 265
NlaIV	GGNNCC	2 cut(s)	154, 603
NmuCI	GTSAC	2 cut(s)	46, 730
NspV	TTCGAA	2 cut(s)	358, 400
PaeR7I	CTCGAG	1 cut(s)	65
PcsI	WCGNNNNNNNCGW	1 cut(s)	63
PfeI	GAWTC	1 cut(s)	352
PkrI	GCNGC	8 cut(s)	230, 388, 503, 540, 543, 546, 707, 755
Ple19I	CGATCG	1 cut(s)	763
PluTI	GGCGCC	1 cut(s)	156
PmaCI	CACGTG	1 cut(s)	497
PmlI	CACGTG	1 cut(s)	497
Ppu21I	YACGTR	2 cut(s)	133, 497
Psp124BI	GAGCTC	1 cut(s)	173
PspCI	CACGTG	1 cut(s)	497
PspEI	GGTNACC	2 cut(s)	46, 730
PspN4I	GGNNCC	2 cut(s)	154, 603
PspPI	GGNCC	2 cut(s)	265, 536
PvuI	CGATCG	1 cut(s)	763
RsaI	GTAC	2 cut(s)	592, 811
RsaNI	GTAC	2 cut(s)	591, 810
SacI	GAGCTC	1 cut(s)	173
SatI	GCNGC	8 cut(s)	229, 387, 502, 539, 542, 545, 706, 754
Sau3AI	GATC	1 cut(s)	760
Sau96I	GGNCC	2 cut(s)	265, 536
ScaI	AGTACT	1 cut(s)	592
SduI	GDGCHC	2 cut(s)	173, 563
SfaNI	GCATC	1 cut(s)	496
SfcI	CTRYAG	1 cut(s)	641
SfoI	GGCGCC	1 cut(s)	154
Sfr274I	CTCGAG	1 cut(s)	65
SfuI	TTCGAA	2 cut(s)	358, 400
SinI	GGWCC	1 cut(s)	265
SlaI	CTCGAG	1 cut(s)	65
SmlI	CTYRAG	1 cut(s)	65
SmoI	CTYRAG	1 cut(s)	65
Sse9I	AATT	6 cut(s)	6, 253, 309, 376, 396, 571
SsiI	CCGC	8 cut(s)	38, 51, 174, 229, 386, 539, 699, 753
SspDI	GGCGCC	1 cut(s)	152
SstI	GAGCTC	1 cut(s)	173
StyI	CCWWGG	4 cut(s)	87, 444, 554, 735
TaaI	ACNGT	1 cut(s)	590
TaiI	ACGT	2 cut(s)	135, 499
TaqI	TCGA	7 cut(s)	28, 66, 358, 400, 595, 748, 763
TaqII	GACCGA	1 cut(s)	809
TasI	AATT	6 cut(s)	6, 253, 309, 376, 396, 571
TatI	WGTACW	2 cut(s)	590, 809
TauI	GCSGC	4 cut(s)	231, 389, 541, 756
TfiI	GAWTC	1 cut(s)	352
TseFI	GTSAC	2 cut(s)	46, 730
TseI	GCWGC	4 cut(s)	501, 541, 544, 705
Tsp45I	GTSAC	2 cut(s)	46, 730
TspDTI	ATGAA	3 cut(s)	314, 408, 676
VpaK11BI	GGWCC	1 cut(s)	265
XapI	RAATTY	3 cut(s)	309, 396, 571
XcmI	CCANNNNNNNNNTGG	1 cut(s)	259
XhoI	CTCGAG	1 cut(s)	65
ZrmI	AGTACT	1 cut(s)	592

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.