Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003115.1

Orthogroup ID

OG0001501

Physical Location & Seq

Genomic Coordinates Reverse (-)

125501 .. 127282

Gene Structure 1782 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0003115.1_g000028.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

atggaagaaccaacgccaacgccaccgccaccgacccaaatcccaaatcctcctccgaactcagtcgaaactccccctcatcttcatccaaagaccaagaagagaccccttgacagtgatgcccaaatccccaactccggctacttcaagattcgtgccgtcctcagagacattcgtcctaatgttcttgaggttctccggacccctgactttcggaagtgtaaggcagccaacgaaattcaagaacaggtgaagcttctgatggaactatacaaacagatgacagcacaagcactttccgcaccaagatgtgacaatgtgccagaagggcagctttcttctggtgcgccatcagaacataatcttccttcaggtatatctggtcagaagcagcaggctgaagatgaaccaaataaagggacttatgttgttggagggtcagcctttggctggaacttcatcaccttttccaccacggaaccggtctattatggtatgacaaaggagtcatttcgagcacaagcagcaaagctgacaactgcataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

181

Amino Acids

19.94

Weight (kDa)

7.76

Isoelectric Point (pI)

45.75

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01730
fragaria_vesca	FvH4_7g14150 FvH4_7g29600
malus_domestica	MD01G1056800.v1.1 MD01G1057500.v1.1 MD01G1202200.v1.1 MD07G1139200.v1.1
prunus_persica	Prupe.2G167900_v2.0.a1 Prupe.2G295600_v2.0.a1 Prupe.2G295600_v2.0.a1
pyrus_communis	pycom01g08560 pycom01g08690 pycom01g08730 pycom01g21180 pycom07g13620 pycom07g13660 pycom07g13690 pycom07g13710 pycom07g13950
rosa_chinensis	RchiOBHm_Chr1g0354801 RchiOBHm_Chr1g0355051 RchiOBHm_Chr1g0377581
rosa_laevigata	RLG00000026515 RLG00000028180
rosa_multiflora	Rmu_sc0002832.1_g000009 Rmu_sc0003115.1_g000028 Rmu_sc0003940.1_g000007 Rmu_sc0012587.1_g000007 Rmu_sc0016725.1_g000003
rosa_roxburghii	Rroxscaffold_4G00281220 Rroxscaffold_4G00300710
rosa_rugosa	Rorug01G0244700 Rorug01G0403600
rosa_samantha	Rh1AG255700 Rh1AG257000 Rh1AG429200 Rh1BG226300 Rh1BG380100 Rh1CG238800 Rh1CG239100 Rh1CG240600 Rh1CG394300 Rh1DG253900 Rh1DG411300
rosa_wichuraiana	Rw0G011190 Rw1G022380 Rw1G022430 Rw1G022580 Rw1G022650 Rw1G022660 Rw1G036960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	505
AccIII	TCCGGA	1 cut(s)	198
AciI	CCGC	2 cut(s)	26, 300
AcsI	RAATTY	1 cut(s)	237
AcuI	CTGAAG	2 cut(s)	354, 420
AfiI	CCNNNNNNNGG	3 cut(s)	137, 416, 450
AgeI	ACCGGT	1 cut(s)	481
AgsI	TTSAA	2 cut(s)	148, 242
AluBI	AGCT	3 cut(s)	256, 334, 532
AluI	AGCT	3 cut(s)	256, 334, 532
Alw21I	GWGCWC	1 cut(s)	520
Alw26I	GTCTC	2 cut(s)	97, 162
Aor13HI	TCCGGA	1 cut(s)	198
ApeKI	GCWGC	4 cut(s)	227, 331, 391, 524
ApoI	RAATTY	1 cut(s)	237
AsiGI	ACCGGT	1 cut(s)	481
AspLEI	GCGC	1 cut(s)	349
AspS9I	GGNCC	1 cut(s)	201
AsuHPI	GGTGA	2 cut(s)	262, 454
AvaII	GGWCC	1 cut(s)	201
Bbv12I	GWGCWC	1 cut(s)	520
BbvI	GCAGC	4 cut(s)	239, 343, 403, 536
BccI	CCATC	2 cut(s)	256, 358
BceAI	ACGGC	1 cut(s)	143
BcoDI	GTCTC	2 cut(s)	97, 162
BglI	GCCNNNNNGGC	1 cut(s)	328
BisI	GCNGC	4 cut(s)	228, 332, 392, 525
BlsI	GCNGC	4 cut(s)	229, 333, 393, 526
Bme18I	GGWCC	1 cut(s)	201
BmgT120I	GGNCC	1 cut(s)	201
BmiI	GGNNCC	2 cut(s)	203, 480
BmsI	GCATC	1 cut(s)	109
BoxI	GACNNNNGTC	1 cut(s)	174
BpuEI	CTTGAG	1 cut(s)	209
BsaI	GGTCTC	1 cut(s)	97
BsaJI	CCNNGG	1 cut(s)	474
BsaWI	WCCGGW	2 cut(s)	198, 481
Bsc4I	CCNNNNNNNGG	3 cut(s)	137, 416, 450
Bse118I	RCCGGY	1 cut(s)	481
BseAI	TCCGGA	1 cut(s)	198
BseDI	CCNNGG	1 cut(s)	474
BseGI	GGATG	1 cut(s)	85
BseLI	CCNNNNNNNGG	3 cut(s)	137, 416, 450
BseMII	CTCAG	2 cut(s)	75, 178
BseRI	GAGGAG	1 cut(s)	42
BseXI	GCAGC	4 cut(s)	239, 343, 403, 536
BshTI	ACCGGT	1 cut(s)	481
BsiHKAI	GWGCWC	1 cut(s)	520
BsiSI	CCGG	3 cut(s)	138, 199, 482
BslFI	GGGAC	1 cut(s)	433
BslI	CCNNNNNNNGG	3 cut(s)	137, 416, 450
BsmAI	GTCTC	2 cut(s)	97, 162
BsmFI	GGGAC	1 cut(s)	433
Bso31I	GGTCTC	1 cut(s)	97
Bsp1286I	GDGCHC	1 cut(s)	520
Bsp13I	TCCGGA	1 cut(s)	198
BspACI	CCGC	2 cut(s)	26, 300
BspCNI	CTCAG	2 cut(s)	74, 177
BspEI	TCCGGA	1 cut(s)	198
BspLI	GGNNCC	2 cut(s)	203, 480
BspTNI	GGTCTC	1 cut(s)	97
BsrFI	RCCGGY	1 cut(s)	481
BssAI	RCCGGY	1 cut(s)	481
BssECI	CCNNGG	1 cut(s)	474
Bst4CI	ACNGT	1 cut(s)	116
Bst6I	CTCTTC	1 cut(s)	95
BstC8I	GCNNGC	1 cut(s)	396
BstDEI	CTNAG	2 cut(s)	61, 164
BstDSI	CCRYGG	1 cut(s)	474
BstF5I	GGATG	1 cut(s)	85
BstHHI	GCGC	1 cut(s)	349
BstMAI	GTCTC	2 cut(s)	97, 162
BstMWI	GCNNNNNNNGC	3 cut(s)	299, 328, 524
BstPAI	GACNNNNGTC	1 cut(s)	174
BstV1I	GCAGC	4 cut(s)	239, 343, 403, 536
BtgI	CCRYGG	1 cut(s)	474
BtsCI	GGATG	1 cut(s)	85
BtsIMutI	CAGTG	1 cut(s)	121
Cac8I	GCNNGC	1 cut(s)	396
CfoI	GCGC	1 cut(s)	349
Cfr10I	RCCGGY	1 cut(s)	481
Cfr13I	GGNCC	1 cut(s)	201
CspAI	ACCGGT	1 cut(s)	481
CviJI	RGCY	8 cut(s)	141, 230, 256, 334, 398, 443, 450, 532
CviKI_1	RGCY	8 cut(s)	141, 230, 256, 334, 398, 443, 450, 532
DdeI	CTNAG	2 cut(s)	61, 164
DrdI	GACNNNNNNGTC	1 cut(s)	505
DseDI	GACNNNNNNGTC	1 cut(s)	505
Eam1104I	CTCTTC	1 cut(s)	95
EarI	CTCTTC	1 cut(s)	95
Eco31I	GGTCTC	1 cut(s)	97
Eco47I	GGWCC	1 cut(s)	201
Eco57I	CTGAAG	2 cut(s)	354, 420
FaiI	YATR	7 cut(s)	271, 360, 377, 426, 492, 497, 544
FalI	AAGNNNNNCTT	2 cut(s)	318, 350
FaqI	GGGAC	1 cut(s)	433
Fnu4HI	GCNGC	4 cut(s)	228, 332, 392, 525
FokI	GGATG	1 cut(s)	72
Fsp4HI	GCNGC	4 cut(s)	228, 332, 392, 525
GlaI	GCGC	1 cut(s)	348
GluI	GCNGC	4 cut(s)	228, 332, 392, 525
HapII	CCGG	3 cut(s)	138, 199, 482
HhaI	GCGC	1 cut(s)	349
Hin6I	GCGC	1 cut(s)	347
HinP1I	GCGC	1 cut(s)	347
HindIII	AAGCTT	1 cut(s)	254
HinfI	GANTC	2 cut(s)	151, 506
HpaII	CCGG	3 cut(s)	138, 199, 482
HphI	GGTGA	2 cut(s)	262, 454
Hpy188I	TCNGA	6 cut(s)	57, 167, 216, 261, 355, 387
Hpy188III	TCNNGA	4 cut(s)	148, 188, 199, 242
HpyAV	CCTTC	2 cut(s)	320, 378
HpyCH4III	ACNGT	1 cut(s)	116
HpyCH4V	TGCA	1 cut(s)	542
HpyF10VI	GCNNNNNNNGC	3 cut(s)	299, 328, 524
HpyF3I	CTNAG	2 cut(s)	61, 164
HspAI	GCGC	1 cut(s)	347
Kpn2I	TCCGGA	1 cut(s)	198
Lsp1109I	GCAGC	4 cut(s)	239, 343, 403, 536
LweI	GCATC	1 cut(s)	109
MaeIII	GTNAC	1 cut(s)	311
MboII	GAAGA	6 cut(s)	17, 74, 112, 330, 356, 413
MhlI	GDGCHC	1 cut(s)	520
MluCI	AATT	1 cut(s)	237
MlyI	GAGTC	1 cut(s)	515
MmeI	TCCRAC	1 cut(s)	412
MnlI	CCTC	6 cut(s)	60, 63, 87, 173, 184, 428
MroI	TCCGGA	1 cut(s)	198
MslI	CAYNNNNRTG	1 cut(s)	307
MspI	CCGG	3 cut(s)	138, 199, 482
MwoI	GCNNNNNNNGC	3 cut(s)	299, 328, 524
NlaIV	GGNNCC	2 cut(s)	203, 480
NmuCI	GTSAC	1 cut(s)	311
PfeI	GAWTC	1 cut(s)	151
PinAI	ACCGGT	1 cut(s)	481
PkrI	GCNGC	4 cut(s)	229, 333, 393, 526
PleI	GAGTC	1 cut(s)	514
PpsI	GAGTC	1 cut(s)	514
PshAI	GACNNNNGTC	1 cut(s)	174
PspN4I	GGNNCC	2 cut(s)	203, 480
PspPI	GGNCC	1 cut(s)	201
RseI	CAYNNNNRTG	1 cut(s)	307
SatI	GCNGC	4 cut(s)	228, 332, 392, 525
Sau96I	GGNCC	1 cut(s)	201
SchI	GAGTC	1 cut(s)	515
SduI	GDGCHC	1 cut(s)	520
SetI	ASST	7 cut(s)	195, 252, 258, 336, 376, 467, 534
SfaNI	GCATC	1 cut(s)	109
SinI	GGWCC	1 cut(s)	201
SmiMI	CAYNNNNRTG	1 cut(s)	307
SmlI	CTYRAG	1 cut(s)	188
SmoI	CTYRAG	1 cut(s)	188
Sse9I	AATT	1 cut(s)	237
SsiI	CCGC	2 cut(s)	26, 300
TaaI	ACNGT	1 cut(s)	116
TaqI	TCGA	2 cut(s)	66, 514
TasI	AATT	1 cut(s)	237
TfiI	GAWTC	1 cut(s)	151
TscAI	CASTG	1 cut(s)	121
TseFI	GTSAC	1 cut(s)	311
TseI	GCWGC	4 cut(s)	227, 331, 391, 524
Tsp45I	GTSAC	1 cut(s)	311
TspDTI	ATGAA	3 cut(s)	74, 420, 448
TspGWI	ACGGA	1 cut(s)	491
TspRI	CASTG	1 cut(s)	121
VpaK11BI	GGWCC	1 cut(s)	201
XapI	RAATTY	1 cut(s)	237

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.