Rorug01G0403600

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0001501
Physical Location & Seq
Reverse (-)
51102758 .. 51104362
1605 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0403600.1

Sequence Viewer

Length: 627 bp
ATGATGAAGCACAACGATGATCACAGAAACAACAAGGTCTCCCCCAAGCTCGTGGCCAAGGAGACCTCCGTGGCCAATTCGTCTTGCAGAGTCTACTACGGCGCCGCCGCCGGAGCGGTTCCGTTCGTGTGGGAGTCGCAGCCAGGTACTCCTAAGCACACTCTTTCCGAGACCTCTCTTCCTCCTCTAACTCCTCCTCCTTCATATTCCTTCAACACAACTCCGAAACACTCGTCCTCATCCATGCAAAGAAGCGGCTCTAGAGCTAAAGCGCTTCTGGACTCCATTTTCCCTAGGGTGCTGAAATGGAGGAAGGCCGCCCGGAACATGTCGCCGTCTTCTTCGGTGTCGTGGTCGTCGTCCTCATCCTCATCGTGCTCGTCGACTTCTTCAAAGGGCACCCAGAAACGTTACTCGGTTTCGAGGGTGCCATTTGGCTACGACGACGAGGATGAGGATGAGGATCTAACGAGGTCCGGATCGCCTACTTCGACTTTGTGCTTTGGGATTAAACGCAAAAGTAGTGATTACTTCAGAGGCTGCAATTCGGTGCGGAAGATCAAGTTTGCCTCCATGTCCATTGCTAGTCATGACCAATCACGCCGAGGTCGTACTGCTGAGAATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

208

Amino Acids

22.8

Weight (kDa)

9.9

Isoelectric Point (pI)

66.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 101, 398, 427
AccBSI CCGCTC 1 cut(s) 116
AccI GTMKAC 2 cut(s) 93, 383
AccIII TCCGGA 1 cut(s) 476
AciI CCGC 6 cut(s) 105, 108, 116, 255, 318, 553
AclI AACGTT 1 cut(s) 409
AclWI GGATC 2 cut(s) 471, 487
AcoI YGGCCR 2 cut(s) 54, 72
AcuI CTGAAG 1 cut(s) 517
AcyI GRCGYC 1 cut(s) 102
AfaI GTAC 2 cut(s) 148, 613
AfeI AGCGCT 1 cut(s) 273
AflIII ACRYGT 1 cut(s) 327
AgsI TTSAA 2 cut(s) 214, 393
AjnI CCWGG 1 cut(s) 142
AluBI AGCT 2 cut(s) 49, 266
AluI AGCT 2 cut(s) 49, 266
Alw21I GWGCWC 1 cut(s) 380
Alw26I GTCTC 3 cut(s) 43, 56, 164
AlwI GGATC 2 cut(s) 471, 487
AlwNI CAGNNNCTG 1 cut(s) 540
Aor13HI TCCGGA 1 cut(s) 476
Aor51HI AGCGCT 1 cut(s) 273
AoxI GGCC 3 cut(s) 54, 72, 315
ApeKI GCWGC 2 cut(s) 139, 540
ArsI GACNNNNNNTTYG 2 cut(s) 218, 250
AspA2I CCTAGG 1 cut(s) 293
AspLEI GCGC 2 cut(s) 104, 274
AspS9I GGNCC 1 cut(s) 474
AsuC2I CCSGG 1 cut(s) 322
AvaII GGWCC 1 cut(s) 474
AvrII CCTAGG 1 cut(s) 293
BaeGI GKGCMC 1 cut(s) 401
BalI TGGCCA 2 cut(s) 56, 74
BanI GGYRCC 3 cut(s) 101, 398, 427
BauI CACGAG 1 cut(s) 50
BbsI GAAGAC 1 cut(s) 330
Bbv12I GWGCWC 1 cut(s) 380
BbvI GCAGC 2 cut(s) 151, 527
BceAI ACGGC 2 cut(s) 115, 319
BciT130I CCWGG 1 cut(s) 144
BclI TGATCA 1 cut(s) 19
BcnI CCSGG 1 cut(s) 322
BcoDI GTCTC 3 cut(s) 43, 56, 164
BfaI CTAG 3 cut(s) 261, 294, 585
BfoI RGCGCY 2 cut(s) 105, 275
BisI GCNGC 6 cut(s) 105, 108, 140, 256, 318, 541
BlnI CCTAGG 1 cut(s) 293
BlsI GCNGC 6 cut(s) 106, 109, 141, 257, 319, 542
Bme1390I CCNGG 2 cut(s) 144, 322
Bme18I GGWCC 1 cut(s) 474
BmgT120I GGNCC 1 cut(s) 474
BmiI GGNNCC 4 cut(s) 103, 120, 400, 429
BmrFI CCNGG 2 cut(s) 144, 322
BpiI GAAGAC 1 cut(s) 330
Bpu10I CCTNAGC 1 cut(s) 153
BpuMI CCSGG 1 cut(s) 322
BsaBI GATNNNNATC 1 cut(s) 462
BsaHI GRCGYC 1 cut(s) 102
BsaI GGTCTC 3 cut(s) 43, 56, 164
BsaJI CCNNGG 4 cut(s) 57, 69, 293, 604
BsaWI WCCGGW 1 cut(s) 476
BsaXI ACNNNNNCTCC 4 cut(s) 23, 53, 181, 211
Bse3DI GCAATG 1 cut(s) 579
Bse8I GATNNNNATC 1 cut(s) 462
BseAI TCCGGA 1 cut(s) 476
BseBI CCWGG 1 cut(s) 144
BseDI CCNNGG 4 cut(s) 57, 69, 293, 604
BseGI GGATG 4 cut(s) 239, 365, 457, 463
BseJI GATNNNNATC 1 cut(s) 462
BseMI GCAATG 1 cut(s) 579
BseMII CTCAG 1 cut(s) 609
BseRI GAGGAG 3 cut(s) 174, 183, 186
BseSI GKGCMC 1 cut(s) 401
BseXI GCAGC 2 cut(s) 151, 527
BshFI GGCC 3 cut(s) 56, 74, 317
BshNI GGYRCC 3 cut(s) 101, 398, 427
BsiHKAI GWGCWC 1 cut(s) 380
BsiSI CCGG 3 cut(s) 111, 322, 477
BsmAI GTCTC 3 cut(s) 43, 56, 164
BsnI GGCC 3 cut(s) 56, 74, 317
Bso31I GGTCTC 3 cut(s) 43, 56, 164
Bsp1286I GDGCHC 2 cut(s) 380, 401
Bsp13I TCCGGA 1 cut(s) 476
Bsp143I GATC 4 cut(s) 19, 463, 479, 558
BspACI CCGC 6 cut(s) 105, 108, 116, 255, 318, 553
BspANI GGCC 3 cut(s) 56, 74, 317
BspCNI CTCAG 1 cut(s) 610
BspEI TCCGGA 1 cut(s) 476
BspHI TCATGA 1 cut(s) 589
BspLI GGNNCC 4 cut(s) 103, 120, 400, 429
BspPI GGATC 2 cut(s) 471, 487
BspT107I GGYRCC 3 cut(s) 101, 398, 427
BspTNI GGTCTC 3 cut(s) 43, 56, 164
BsrBI CCGCTC 1 cut(s) 116
BsrDI GCAATG 1 cut(s) 579
BssECI CCNNGG 4 cut(s) 57, 69, 293, 604
BssMI GATC 4 cut(s) 19, 463, 479, 558
BssNI GRCGYC 1 cut(s) 102
BssSI CACGAG 1 cut(s) 50
BssT1I CCWWGG 2 cut(s) 57, 293
Bst2BI CACGAG 1 cut(s) 50
Bst2UI CCWGG 1 cut(s) 144
Bst6I CTCTTC 1 cut(s) 183
BstACI GRCGYC 1 cut(s) 102
BstDEI CTNAG 2 cut(s) 153, 618
BstDSI CCRYGG 1 cut(s) 69
BstF5I GGATG 4 cut(s) 239, 365, 457, 463
BstH2I RGCGCY 2 cut(s) 105, 275
BstHHI GCGC 2 cut(s) 104, 274
BstKTI GATC 4 cut(s) 22, 466, 482, 561
BstMAI GTCTC 3 cut(s) 43, 56, 164
BstMBI GATC 4 cut(s) 19, 463, 479, 558
BstMWI GCNNNNNNNGC 1 cut(s) 113
BstNI CCWGG 1 cut(s) 144
BstNSI RCATGY 1 cut(s) 331
BstSCI CCNGG 2 cut(s) 142, 320
BstSLI GKGCMC 1 cut(s) 401
BstV1I GCAGC 2 cut(s) 151, 527
BstV2I GAAGAC 1 cut(s) 330
BstX2I RGATCY 1 cut(s) 463
BstXI CCANNNNNNTGG 1 cut(s) 52
BstYI RGATCY 1 cut(s) 463
BsuRI GGCC 3 cut(s) 56, 74, 317
BtgI CCRYGG 1 cut(s) 69
BtsCI GGATG 4 cut(s) 239, 365, 457, 463
CaiI CAGNNNCTG 1 cut(s) 540
CciI TCATGA 1 cut(s) 589
CfoI GCGC 2 cut(s) 104, 274
Cfr13I GGNCC 1 cut(s) 474
Csp6I GTAC 2 cut(s) 147, 612
CviAII CATG 4 cut(s) 244, 328, 574, 590
CviJI RGCY 9 cut(s) 49, 56, 74, 142, 258, 266, 317, 438, 540
CviKI_1 RGCY 9 cut(s) 49, 56, 74, 142, 258, 266, 317, 438, 540
CviQI GTAC 2 cut(s) 147, 612
DdeI CTNAG 2 cut(s) 153, 618
DinI GGCGCC 1 cut(s) 103
DpnI GATC 4 cut(s) 21, 465, 481, 560
DpnII GATC 4 cut(s) 19, 463, 479, 558
EaeI YGGCCR 2 cut(s) 54, 72
Eam1104I CTCTTC 1 cut(s) 183
EarI CTCTTC 1 cut(s) 183
Eco130I CCWWGG 2 cut(s) 57, 293
Eco31I GGTCTC 3 cut(s) 43, 56, 164
Eco47I GGWCC 1 cut(s) 474
Eco47III AGCGCT 1 cut(s) 273
Eco57I CTGAAG 1 cut(s) 517
EcoRII CCWGG 1 cut(s) 142
EcoT14I CCWWGG 2 cut(s) 57, 293
EgeI GGCGCC 1 cut(s) 103
EheI GGCGCC 1 cut(s) 103
ErhI CCWWGG 2 cut(s) 57, 293
FaeI CATG 4 cut(s) 247, 331, 577, 593
FaiI YATR 5 cut(s) 205, 245, 329, 575, 591
FatI CATG 4 cut(s) 243, 327, 573, 589
FbaI TGATCA 1 cut(s) 19
FblI GTMKAC 2 cut(s) 93, 383
Fnu4HI GCNGC 6 cut(s) 105, 108, 140, 256, 318, 541
FokI GGATG 4 cut(s) 226, 352, 464, 470
Fsp4HI GCNGC 6 cut(s) 105, 108, 140, 256, 318, 541
FspBI CTAG 3 cut(s) 261, 294, 585
GlaI GCGC 2 cut(s) 103, 273
GluI GCNGC 6 cut(s) 105, 108, 140, 256, 318, 541
HaeII RGCGCY 2 cut(s) 105, 275
HaeIII GGCC 3 cut(s) 56, 74, 317
HapII CCGG 3 cut(s) 111, 322, 477
HhaI GCGC 2 cut(s) 104, 274
Hin1I GRCGYC 1 cut(s) 102
Hin1II CATG 4 cut(s) 247, 331, 577, 593
Hin6I GCGC 2 cut(s) 102, 272
HinP1I GCGC 2 cut(s) 102, 272
HincII GTYRAC 1 cut(s) 384
HindII GTYRAC 1 cut(s) 384
HinfI GANTC 3 cut(s) 90, 134, 281
HpaII CCGG 3 cut(s) 111, 322, 477
Hpy166II GTNNAC 2 cut(s) 94, 384
Hpy188I TCNGA 3 cut(s) 169, 225, 536
Hpy188III TCNNGA 4 cut(s) 261, 278, 477, 590
Hpy8I GTNNAC 2 cut(s) 94, 384
Hpy99I CGWCG 4 cut(s) 361, 385, 446, 449
HpyAV CCTTC 3 cut(s) 210, 220, 307
HpyCH4IV ACGT 1 cut(s) 409
HpyCH4V TGCA 3 cut(s) 87, 247, 543
HpyF10VI GCNNNNNNNGC 1 cut(s) 113
HpyF3I CTNAG 2 cut(s) 153, 618
HpySE526I ACGT 1 cut(s) 409
Hsp92I GRCGYC 1 cut(s) 102
Hsp92II CATG 4 cut(s) 247, 331, 577, 593
HspAI GCGC 2 cut(s) 102, 272
KasI GGCGCC 1 cut(s) 101
Kpn2I TCCGGA 1 cut(s) 476
Ksp22I TGATCA 1 cut(s) 19
Kzo9I GATC 4 cut(s) 19, 463, 479, 558
LmnI GCTCC 1 cut(s) 113
LpnPI CCDG 7 cut(s) 124, 129, 156, 263, 335, 416, 490
Lsp1109I GCAGC 2 cut(s) 151, 527
MaeI CTAG 3 cut(s) 261, 294, 585
MaeII ACGT 1 cut(s) 409
MaeIII GTNAC 1 cut(s) 410
MalI GATC 4 cut(s) 21, 465, 481, 560
MbiI CCGCTC 1 cut(s) 116
MboI GATC 4 cut(s) 19, 463, 479, 558
MboII GAAGA 5 cut(s) 170, 330, 333, 381, 568
MflI RGATCY 1 cut(s) 463
MhlI GDGCHC 2 cut(s) 380, 401
MlsI TGGCCA 2 cut(s) 56, 74
MluCI AATT 3 cut(s) 76, 544, 622
MluNI TGGCCA 2 cut(s) 56, 74
Mly113I GGCGCC 1 cut(s) 102
MlyI GAGTC 3 cut(s) 99, 143, 275
Mox20I TGGCCA 2 cut(s) 56, 74
MroI TCCGGA 1 cut(s) 476
MscI TGGCCA 2 cut(s) 56, 74
MseI TTAA 1 cut(s) 510
MslI CAYNNNNRTG 1 cut(s) 15
Msp20I TGGCCA 2 cut(s) 56, 74
MspI CCGG 3 cut(s) 111, 322, 477
MspR9I CCNGG 2 cut(s) 144, 322
MvaI CCWGG 1 cut(s) 144
MwoI GCNNNNNNNGC 1 cut(s) 113
NarI GGCGCC 1 cut(s) 102
NciI CCSGG 1 cut(s) 322
NdeII GATC 4 cut(s) 19, 463, 479, 558
NlaIII CATG 4 cut(s) 247, 331, 577, 593
NlaIV GGNNCC 4 cut(s) 103, 120, 400, 429
NspI RCATGY 1 cut(s) 331
PagI TCATGA 1 cut(s) 589
PciI ACATGT 1 cut(s) 327
PcsI WCGNNNNNNNCGW 4 cut(s) 356, 380, 488, 607
PkrI GCNGC 6 cut(s) 106, 109, 141, 257, 319, 542
PleI GAGTC 3 cut(s) 98, 142, 275
PluTI GGCGCC 1 cut(s) 105
PpsI GAGTC 3 cut(s) 98, 142, 275
PscI ACATGT 1 cut(s) 327
Psp1406I AACGTT 1 cut(s) 409
Psp6I CCWGG 1 cut(s) 142
PspGI CCWGG 1 cut(s) 142
PspN4I GGNNCC 4 cut(s) 103, 120, 400, 429
PspPI GGNCC 1 cut(s) 474
PstNI CAGNNNCTG 1 cut(s) 540
PsuI RGATCY 1 cut(s) 463
RsaI GTAC 2 cut(s) 148, 613
RsaNI GTAC 2 cut(s) 147, 612
RseI CAYNNNNRTG 1 cut(s) 15
SalI GTCGAC 1 cut(s) 382
SaqAI TTAA 1 cut(s) 510
SatI GCNGC 6 cut(s) 105, 108, 140, 256, 318, 541
Sau3AI GATC 4 cut(s) 19, 463, 479, 558
Sau96I GGNCC 1 cut(s) 474
SchI GAGTC 3 cut(s) 99, 143, 275
ScrFI CCNGG 2 cut(s) 144, 322
SduI GDGCHC 2 cut(s) 380, 401
SetI ASST 9 cut(s) 39, 51, 68, 148, 176, 268, 412, 476, 610
SfoI GGCGCC 1 cut(s) 103
SinI GGWCC 1 cut(s) 474
SmiMI CAYNNNNRTG 1 cut(s) 15
Sse9I AATT 3 cut(s) 76, 544, 622
SsiI CCGC 6 cut(s) 105, 108, 116, 255, 318, 553
SspDI GGCGCC 1 cut(s) 101
SspMI CTAG 3 cut(s) 261, 294, 585
StyD4I CCNGG 2 cut(s) 142, 320
StyI CCWWGG 2 cut(s) 57, 293
TaiI ACGT 1 cut(s) 412
TaqI TCGA 3 cut(s) 383, 422, 491
TasI AATT 3 cut(s) 76, 544, 622
TauI GCSGC 4 cut(s) 107, 110, 258, 320
Tru1I TTAA 1 cut(s) 510
Tru9I TTAA 1 cut(s) 510
TseI GCWGC 2 cut(s) 139, 540
TspDTI ATGAA 2 cut(s) 20, 192
TspGWI ACGGA 2 cut(s) 58, 111
VpaK11BI GGWCC 1 cut(s) 474
XbaI TCTAGA 1 cut(s) 260
XceI RCATGY 1 cut(s) 331
XmaJI CCTAGG 1 cut(s) 293
XmiI GTMKAC 2 cut(s) 93, 383
XspI CTAG 3 cut(s) 261, 294, 585
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.