Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0001501

Physical Location & Seq

Genomic Coordinates Forward (+)

15492510 .. 15494366

Gene Structure 1857 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g13620.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGAAGAAGATCCAAAGTTGCAACCAGCCGAGTCCACAGCCACCGAAATCCTCCCAATCCCTCCGAGCTCCGCCGAAGTCCTCCCTCCCCAGCCTCCTCCGTCTTCTCTTCCTCCCAAGTCCAAGAAGAGACCTCTTGAAAACGATGCCCATTTCTCCAACTCATCCACCCTCTACAAGATTCGCGCCGTCCTCAAAGAGGTCCGCCCTCATTTTCTCGAGGTTCTCAGGACCCCTGACTTTCGAACGTGCAAGTCATCTGAAGAAATTCAAGAATATGTTAAACTTCTAATGGAACTATGCAAACAGATGACGGCAGAAACAGTTTCGGCAACAAGAAGTAAGAATGTGCCAGGTGAAAAGCCCCAAGATACAAGGGCTTTTGCAAAGCCATCAGAAAATAAGTTTCCAACAGGTGTATCCAGCGAAAAGCAGCGGGCTGAAGATGGTCAGACTCAAGGGACATATATTGTTGGTGGGTCTGCTTTCGGCTGGAATTTCATTACCTTTGTAGGCGAAGAACCAGTCTACTATGGAATAACAAAGGAGTCATTTCGAGCTAATGGCAGCAAAGAAACAGTTCAGACTATGGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

199

Amino Acids

22.04

Weight (kDa)

5.87

Isoelectric Point (pI)

55.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01730
fragaria_vesca	FvH4_7g14150 FvH4_7g29600
malus_domestica	MD01G1056800.v1.1 MD01G1057500.v1.1 MD01G1202200.v1.1 MD07G1139200.v1.1
prunus_persica	Prupe.2G167900_v2.0.a1 Prupe.2G295600_v2.0.a1 Prupe.2G295600_v2.0.a1
pyrus_communis	pycom01g08560 pycom01g08690 pycom01g08730 pycom01g21180 pycom07g13620 pycom07g13660 pycom07g13690 pycom07g13710 pycom07g13950
rosa_chinensis	RchiOBHm_Chr1g0354801 RchiOBHm_Chr1g0355051 RchiOBHm_Chr1g0377581
rosa_laevigata	RLG00000026515 RLG00000028180
rosa_multiflora	Rmu_sc0002832.1_g000009 Rmu_sc0003115.1_g000028 Rmu_sc0003940.1_g000007 Rmu_sc0012587.1_g000007 Rmu_sc0016725.1_g000003
rosa_roxburghii	Rroxscaffold_4G00281220 Rroxscaffold_4G00300710
rosa_rugosa	Rorug01G0244700 Rorug01G0403600
rosa_samantha	Rh1AG255700 Rh1AG257000 Rh1AG429200 Rh1BG226300 Rh1BG380100 Rh1CG238800 Rh1CG239100 Rh1CG240600 Rh1CG394300 Rh1DG253900 Rh1DG411300
rosa_wichuraiana	Rw0G011190 Rw1G022380 Rw1G022430 Rw1G022580 Rw1G022650 Rw1G022660 Rw1G036960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	528
AccII	CGCG	1 cut(s)	186
AciI	CCGC	3 cut(s)	72, 205, 436
AclWI	GGATC	1 cut(s)	5
AcsI	RAATTY	2 cut(s)	267, 496
AcuI	CTGAAG	2 cut(s)	282, 462
AfiI	CCNNNNNNNGG	1 cut(s)	199
AgsI	TTSAA	2 cut(s)	140, 272
AjnI	CCWGG	1 cut(s)	352
AluBI	AGCT	2 cut(s)	69, 560
AluI	AGCT	2 cut(s)	69, 560
Alw21I	GWGCWC	1 cut(s)	71
Alw26I	GTCTC	1 cut(s)	124
AlwI	GGATC	1 cut(s)	5
Ama87I	CYCGRG	1 cut(s)	218
ApeKI	GCWGC	2 cut(s)	433, 567
ApoI	RAATTY	2 cut(s)	267, 496
ArsI	GACNNNNNNTTYG	2 cut(s)	510, 542
Asp700I	GAANNNNTTC	2 cut(s)	267, 579
AspLEI	GCGC	1 cut(s)	188
AspS9I	GGNCC	2 cut(s)	202, 231
AsuHPI	GGTGA	1 cut(s)	368
AsuII	TTCGAA	1 cut(s)	244
AvaI	CYCGRG	1 cut(s)	218
AvaII	GGWCC	2 cut(s)	202, 231
BaeI	ACNNNNGTAYC	2 cut(s)	402, 435
BanII	GRGCYC	1 cut(s)	71
BbsI	GAAGAC	1 cut(s)	96
Bbv12I	GWGCWC	1 cut(s)	71
BbvI	GCAGC	2 cut(s)	445, 579
BccI	CCATC	2 cut(s)	400, 440
BceAI	ACGGC	2 cut(s)	173, 330
BciT130I	CCWGG	1 cut(s)	354
BciVI	GTATCC	1 cut(s)	430
BcoDI	GTCTC	1 cut(s)	124
BfuI	GTATCC	1 cut(s)	430
BisI	GCNGC	2 cut(s)	434, 568
BlsI	GCNGC	2 cut(s)	435, 569
Bme1390I	CCNGG	1 cut(s)	354
Bme18I	GGWCC	2 cut(s)	202, 231
BmeT110I	CYCGRG	1 cut(s)	218
BmgT120I	GGNCC	2 cut(s)	202, 231
BmiI	GGNNCC	1 cut(s)	233
BmrFI	CCNGG	1 cut(s)	354
BmsI	GCATC	1 cut(s)	136
BpiI	GAAGAC	1 cut(s)	96
Bpu14I	TTCGAA	1 cut(s)	244
BpuEI	CTTGAG	1 cut(s)	441
BsaI	GGTCTC	1 cut(s)	124
Bsc4I	CCNNNNNNNGG	1 cut(s)	199
Bse1I	ACTGG	1 cut(s)	524
BseBI	CCWGG	1 cut(s)	354
BseGI	GGATG	1 cut(s)	164
BseLI	CCNNNNNNNGG	1 cut(s)	199
BseMII	CTCAG	1 cut(s)	241
BseNI	ACTGG	1 cut(s)	524
BseRI	GAGGAG	1 cut(s)	87
BseXI	GCAGC	2 cut(s)	445, 579
BseYI	CCCAGC	1 cut(s)	90
Bsh1236I	CGCG	1 cut(s)	186
BsiHKAI	GWGCWC	1 cut(s)	71
BsiHKCI	CYCGRG	1 cut(s)	218
BslFI	GGGAC	1 cut(s)	475
BslI	CCNNNNNNNGG	1 cut(s)	199
BsmAI	GTCTC	1 cut(s)	124
BsmFI	GGGAC	1 cut(s)	475
Bso31I	GGTCTC	1 cut(s)	124
BsoBI	CYCGRG	1 cut(s)	218
Bsp119I	TTCGAA	1 cut(s)	244
Bsp1286I	GDGCHC	1 cut(s)	71
Bsp143I	GATC	1 cut(s)	10
BspACI	CCGC	3 cut(s)	72, 205, 436
BspCNI	CTCAG	1 cut(s)	240
BspFNI	CGCG	1 cut(s)	186
BspLI	GGNNCC	1 cut(s)	233
BspPI	GGATC	1 cut(s)	5
BspT104I	TTCGAA	1 cut(s)	244
BspTNI	GGTCTC	1 cut(s)	124
BsrI	ACTGG	1 cut(s)	524
BssMI	GATC	1 cut(s)	10
Bst2UI	CCWGG	1 cut(s)	354
Bst4CI	ACNGT	2 cut(s)	325, 580
Bst6I	CTCTTC	2 cut(s)	114, 122
BstBI	TTCGAA	1 cut(s)	244
BstC8I	GCNNGC	1 cut(s)	438
BstDEI	CTNAG	1 cut(s)	227
BstENI	CCTNNNNNAGG	1 cut(s)	197
BstF5I	GGATG	1 cut(s)	164
BstFNI	CGCG	1 cut(s)	186
BstHHI	GCGC	1 cut(s)	188
BstKTI	GATC	1 cut(s)	13
BstMAI	GTCTC	1 cut(s)	124
BstMBI	GATC	1 cut(s)	10
BstNI	CCWGG	1 cut(s)	354
BstSCI	CCNGG	1 cut(s)	352
BstUI	CGCG	1 cut(s)	186
BstV1I	GCAGC	2 cut(s)	445, 579
BstV2I	GAAGAC	1 cut(s)	96
BstX2I	RGATCY	1 cut(s)	10
BstYI	RGATCY	1 cut(s)	10
BsuI	GTATCC	1 cut(s)	430
BtsCI	GGATG	1 cut(s)	164
Cac8I	GCNNGC	1 cut(s)	438
CfoI	GCGC	1 cut(s)	188
Cfr13I	GGNCC	2 cut(s)	202, 231
DdeI	CTNAG	1 cut(s)	227
DpnI	GATC	1 cut(s)	12
DpnII	GATC	1 cut(s)	10
Eam1104I	CTCTTC	2 cut(s)	114, 122
EarI	CTCTTC	2 cut(s)	114, 122
EciI	GGCGGA	2 cut(s)	61, 194
Ecl136II	GAGCTC	1 cut(s)	69
Eco24I	GRGCYC	1 cut(s)	71
Eco31I	GGTCTC	1 cut(s)	124
Eco47I	GGWCC	2 cut(s)	202, 231
Eco53kI	GAGCTC	1 cut(s)	69
Eco57I	CTGAAG	2 cut(s)	282, 462
Eco88I	CYCGRG	1 cut(s)	218
EcoICRI	GAGCTC	1 cut(s)	69
EcoNI	CCTNNNNNAGG	1 cut(s)	197
EcoO109I	RGGNCCY	1 cut(s)	231
EcoRII	CCWGG	1 cut(s)	352
EcoT38I	GRGCYC	1 cut(s)	71
FaiI	YATR	6 cut(s)	279, 301, 466, 468, 534, 590
FaqI	GGGAC	1 cut(s)	475
FauI	CCCGC	1 cut(s)	429
FblI	GTMKAC	1 cut(s)	528
Fnu4HI	GCNGC	2 cut(s)	434, 568
FokI	GGATG	1 cut(s)	151
FriOI	GRGCYC	1 cut(s)	71
Fsp4HI	GCNGC	2 cut(s)	434, 568
GlaI	GCGC	1 cut(s)	187
GluI	GCNGC	2 cut(s)	434, 568
GsaI	CCCAGC	1 cut(s)	94
HhaI	GCGC	1 cut(s)	188
Hin6I	GCGC	1 cut(s)	186
HinP1I	GCGC	1 cut(s)	186
HinfI	GANTC	4 cut(s)	32, 181, 454, 548
HphI	GGTGA	1 cut(s)	368
Hpy166II	GTNNAC	2 cut(s)	36, 529
Hpy188I	TCNGA	5 cut(s)	66, 262, 397, 453, 585
Hpy188III	TCNNGA	4 cut(s)	137, 218, 229, 272
Hpy8I	GTNNAC	2 cut(s)	36, 529
HpyCH4III	ACNGT	2 cut(s)	325, 580
HpyCH4IV	ACGT	1 cut(s)	248
HpyCH4V	TGCA	4 cut(s)	22, 252, 303, 386
HpyF3I	CTNAG	1 cut(s)	227
HpySE526I	ACGT	1 cut(s)	248
HspAI	GCGC	1 cut(s)	186
Kzo9I	GATC	1 cut(s)	10
LmnI	GCTCC	1 cut(s)	74
Lsp1109I	GCAGC	2 cut(s)	445, 579
LweI	GCATC	1 cut(s)	136
MaeII	ACGT	1 cut(s)	248
MalI	GATC	1 cut(s)	12
MboI	GATC	1 cut(s)	10
MboII	GAAGA	8 cut(s)	17, 20, 96, 101, 139, 275, 455, 530
MflI	RGATCY	1 cut(s)	10
MhlI	GDGCHC	1 cut(s)	71
MluCI	AATT	2 cut(s)	267, 496
MlyI	GAGTC	3 cut(s)	41, 448, 557
MmeI	TCCRAC	2 cut(s)	183, 434
MroXI	GAANNNNTTC	2 cut(s)	267, 579
MseI	TTAA	1 cut(s)	282
MspA1I	CMGCKG	1 cut(s)	436
MspR9I	CCNGG	1 cut(s)	354
MvaI	CCWGG	1 cut(s)	354
MvnI	CGCG	1 cut(s)	186
NdeII	GATC	1 cut(s)	10
NlaIV	GGNNCC	1 cut(s)	233
NmeAIII	GCCGAG	1 cut(s)	55
NspV	TTCGAA	1 cut(s)	244
PaeR7I	CTCGAG	1 cut(s)	218
PdmI	GAANNNNTTC	2 cut(s)	267, 579
PfeI	GAWTC	1 cut(s)	181
PkrI	GCNGC	2 cut(s)	435, 569
PleI	GAGTC	3 cut(s)	40, 448, 556
PpsI	GAGTC	3 cut(s)	40, 448, 556
PpuMI	RGGWCCY	1 cut(s)	231
Psp124BI	GAGCTC	1 cut(s)	71
Psp5II	RGGWCCY	1 cut(s)	231
Psp6I	CCWGG	1 cut(s)	352
PspFI	CCCAGC	1 cut(s)	90
PspGI	CCWGG	1 cut(s)	352
PspN4I	GGNNCC	1 cut(s)	233
PspPI	GGNCC	2 cut(s)	202, 231
PspPPI	RGGWCCY	1 cut(s)	231
PsuI	RGATCY	1 cut(s)	10
SacI	GAGCTC	1 cut(s)	71
SaqAI	TTAA	1 cut(s)	282
SatI	GCNGC	2 cut(s)	434, 568
Sau3AI	GATC	1 cut(s)	10
Sau96I	GGNCC	2 cut(s)	202, 231
SchI	GAGTC	3 cut(s)	41, 448, 557
ScrFI	CCNGG	1 cut(s)	354
SduI	GDGCHC	1 cut(s)	71
SetI	ASST	9 cut(s)	71, 136, 204, 225, 251, 358, 418, 509, 562
SfaNI	GCATC	1 cut(s)	136
Sfr274I	CTCGAG	1 cut(s)	218
SfuI	TTCGAA	1 cut(s)	244
SinI	GGWCC	2 cut(s)	202, 231
SlaI	CTCGAG	1 cut(s)	218
SmlI	CTYRAG	2 cut(s)	218, 456
SmoI	CTYRAG	2 cut(s)	218, 456
Sse9I	AATT	2 cut(s)	267, 496
SsiI	CCGC	3 cut(s)	72, 205, 436
SstI	GAGCTC	1 cut(s)	71
StyD4I	CCNGG	1 cut(s)	352
TaaI	ACNGT	2 cut(s)	325, 580
TaiI	ACGT	1 cut(s)	251
TaqI	TCGA	3 cut(s)	219, 244, 556
TasI	AATT	2 cut(s)	267, 496
TfiI	GAWTC	1 cut(s)	181
Tru1I	TTAA	1 cut(s)	282
Tru9I	TTAA	1 cut(s)	282
TseI	GCWGC	2 cut(s)	433, 567
TspDTI	ATGAA	1 cut(s)	490
TspGWI	ACGGA	1 cut(s)	90
VpaK11BI	GGWCC	2 cut(s)	202, 231
XagI	CCTNNNNNAGG	1 cut(s)	197
XapI	RAATTY	2 cut(s)	267, 496
XhoI	CTCGAG	1 cut(s)	218
XmiI	GTMKAC	1 cut(s)	528
XmnI	GAANNNNTTC	2 cut(s)	267, 579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.