Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0001501

Physical Location & Seq

Genomic Coordinates Reverse (-)

21616953 .. 21621176

Gene Structure 4224 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G167900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGGAAGATCCCAACCCAGCCCAGCCCACAGTCACGCAAATCGCGAACCCCCCAAACTCTGAAGAAGCTCTTGCTCCACAGCCTCCCCCCCCTTCTCTTCCTCCCAAGACCAAGAAGAGACCCCTTGACAATGATGCCCATATCTCCAACTCCAGCTACTTCAAGGTTCGCGCCGTCCTCAAGGAGATTCGCCCTCATTTTCTTGAGGTTCTCCGGACCCCTGACTTTCGATTATGCAAGGCGGCCAATGACATCCAAGAACAAGTGAAGCTTCTGATGGAACTATACAAACAGATGACAGCAGAAGCAGTTTCCACAGCAAGATGTAAGAATGTGCCGGAAGGCCAGCCTTTATCAAGTGAAAAGTCCCAAGATACTAGAGCTTCTGGAAAACCATCAGAAAATAAATTTCCGTCAGGTATATCCAGCGAGAAGGCTGAAGATGGTCAAATTCAAGGGACATATGTTGTTGGAGGTTCAGCTTTTGGCTGGAATTTCATCACCTTTTTAGGCAGTGAACCAGTCTACTGTGGGATAACAAAGGAGTCATTTCGAGCTAATGGGAGCAAAGTAACAGTAACATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

195

Amino Acids

21.22

Weight (kDa)

7.67

Isoelectric Point (pI)

46.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01730
fragaria_vesca	FvH4_7g14150 FvH4_7g29600
malus_domestica	MD01G1056800.v1.1 MD01G1057500.v1.1 MD01G1202200.v1.1 MD07G1139200.v1.1
prunus_persica	Prupe.2G167900_v2.0.a1 Prupe.2G295600_v2.0.a1 Prupe.2G295600_v2.0.a1
pyrus_communis	pycom01g08560 pycom01g08690 pycom01g08730 pycom01g21180 pycom07g13620 pycom07g13660 pycom07g13690 pycom07g13710 pycom07g13950
rosa_chinensis	RchiOBHm_Chr1g0354801 RchiOBHm_Chr1g0355051 RchiOBHm_Chr1g0377581
rosa_laevigata	RLG00000026515 RLG00000028180
rosa_multiflora	Rmu_sc0002832.1_g000009 Rmu_sc0003115.1_g000028 Rmu_sc0003940.1_g000007 Rmu_sc0012587.1_g000007 Rmu_sc0016725.1_g000003
rosa_roxburghii	Rroxscaffold_4G00281220 Rroxscaffold_4G00300710
rosa_rugosa	Rorug01G0244700 Rorug01G0403600
rosa_samantha	Rh1AG255700 Rh1AG257000 Rh1AG429200 Rh1BG226300 Rh1BG380100 Rh1CG238800 Rh1CG239100 Rh1CG240600 Rh1CG394300 Rh1DG253900 Rh1DG411300
rosa_wichuraiana	Rw0G011190 Rw1G022380 Rw1G022430 Rw1G022580 Rw1G022650 Rw1G022660 Rw1G036960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	525
AccII	CGCG	2 cut(s)	44, 171
AccIII	TCCGGA	1 cut(s)	213
AciI	CCGC	1 cut(s)	242
AclWI	GGATC	1 cut(s)	2
AcoI	YGGCCR	1 cut(s)	243
AcsI	RAATTY	3 cut(s)	407, 450, 493
AcuI	CTGAAG	2 cut(s)	81, 459
AgsI	TTSAA	2 cut(s)	163, 455
AluBI	AGCT	6 cut(s)	68, 156, 271, 383, 482, 557
AluI	AGCT	6 cut(s)	68, 156, 271, 383, 482, 557
Alw26I	GTCTC	1 cut(s)	112
AlwI	GGATC	1 cut(s)	2
Aor13HI	TCCGGA	1 cut(s)	213
AoxI	GGCC	2 cut(s)	243, 343
ApoI	RAATTY	3 cut(s)	407, 450, 493
AspLEI	GCGC	1 cut(s)	173
AspS9I	GGNCC	1 cut(s)	216
AsuHPI	GGTGA	1 cut(s)	493
AvaII	GGWCC	1 cut(s)	216
BccI	CCATC	3 cut(s)	271, 403, 437
BceAI	ACGGC	1 cut(s)	158
BcoDI	GTCTC	1 cut(s)	112
BfaI	CTAG	1 cut(s)	378
BisI	GCNGC	1 cut(s)	243
BlsI	GCNGC	1 cut(s)	244
Bme18I	GGWCC	1 cut(s)	216
BmgT120I	GGNCC	1 cut(s)	216
BmiI	GGNNCC	1 cut(s)	218
BmsI	GCATC	1 cut(s)	124
BpmI	CTGGAG	1 cut(s)	136
BpuEI	CTTGAG	2 cut(s)	164, 224
BsaI	GGTCTC	1 cut(s)	112
BsaWI	WCCGGW	1 cut(s)	213
Bse1I	ACTGG	1 cut(s)	521
BseAI	TCCGGA	1 cut(s)	213
BseGI	GGATG	1 cut(s)	252
BseNI	ACTGG	1 cut(s)	521
BseYI	CCCAGC	2 cut(s)	16, 21
Bsh1236I	CGCG	2 cut(s)	44, 171
BshFI	GGCC	2 cut(s)	245, 345
BsiSI	CCGG	2 cut(s)	214, 338
BslFI	GGGAC	2 cut(s)	352, 472
BsmAI	GTCTC	1 cut(s)	112
BsmFI	GGGAC	2 cut(s)	352, 472
BsnI	GGCC	2 cut(s)	245, 345
Bso31I	GGTCTC	1 cut(s)	112
Bsp13I	TCCGGA	1 cut(s)	213
Bsp143I	GATC	1 cut(s)	7
Bsp68I	TCGCGA	1 cut(s)	44
BspACI	CCGC	1 cut(s)	242
BspANI	GGCC	2 cut(s)	245, 345
BspEI	TCCGGA	1 cut(s)	213
BspFNI	CGCG	2 cut(s)	44, 171
BspLI	GGNNCC	1 cut(s)	218
BspPI	GGATC	1 cut(s)	2
BspTNI	GGTCTC	1 cut(s)	112
BsrI	ACTGG	1 cut(s)	521
BssMI	GATC	1 cut(s)	7
Bst4CI	ACNGT	3 cut(s)	31, 530, 577
Bst6I	CTCTTC	2 cut(s)	102, 110
BstC8I	GCNNGC	1 cut(s)	347
BstF5I	GGATG	1 cut(s)	252
BstFNI	CGCG	2 cut(s)	44, 171
BstHHI	GCGC	1 cut(s)	173
BstKTI	GATC	1 cut(s)	10
BstMAI	GTCTC	1 cut(s)	112
BstMBI	GATC	1 cut(s)	7
BstUI	CGCG	2 cut(s)	44, 171
BstX2I	RGATCY	1 cut(s)	7
BstYI	RGATCY	1 cut(s)	7
BsuRI	GGCC	2 cut(s)	245, 345
BtsCI	GGATG	1 cut(s)	252
BtsI	GCAGTG	1 cut(s)	520
BtsIMutI	CAGTG	1 cut(s)	520
BtuMI	TCGCGA	1 cut(s)	44
Cac8I	GCNNGC	1 cut(s)	347
CfoI	GCGC	1 cut(s)	173
Cfr13I	GGNCC	1 cut(s)	216
DpnI	GATC	1 cut(s)	9
DpnII	GATC	1 cut(s)	7
EaeI	YGGCCR	1 cut(s)	243
Eam1104I	CTCTTC	2 cut(s)	102, 110
EarI	CTCTTC	2 cut(s)	102, 110
Eco31I	GGTCTC	1 cut(s)	112
Eco47I	GGWCC	1 cut(s)	216
Eco57I	CTGAAG	2 cut(s)	81, 459
FaiI	YATR	7 cut(s)	141, 235, 286, 422, 463, 465, 583
FalI	AAGNNNNNCTT	4 cut(s)	54, 86, 255, 287
FaqI	GGGAC	2 cut(s)	352, 472
FauNDI	CATATG	1 cut(s)	463
FblI	GTMKAC	1 cut(s)	525
Fnu4HI	GCNGC	1 cut(s)	243
FokI	GGATG	1 cut(s)	239
Fsp4HI	GCNGC	1 cut(s)	243
FspBI	CTAG	1 cut(s)	378
GlaI	GCGC	1 cut(s)	172
GluI	GCNGC	1 cut(s)	243
GsaI	CCCAGC	2 cut(s)	20, 25
GsuI	CTGGAG	1 cut(s)	136
HaeIII	GGCC	2 cut(s)	245, 345
HapII	CCGG	2 cut(s)	214, 338
HhaI	GCGC	1 cut(s)	173
Hin6I	GCGC	1 cut(s)	171
HinP1I	GCGC	1 cut(s)	171
HindIII	AAGCTT	1 cut(s)	269
HinfI	GANTC	2 cut(s)	187, 545
HpaII	CCGG	2 cut(s)	214, 338
HphI	GGTGA	1 cut(s)	493
Hpy166II	GTNNAC	2 cut(s)	518, 526
Hpy188I	TCNGA	3 cut(s)	61, 276, 400
Hpy188III	TCNNGA	4 cut(s)	43, 203, 214, 387
Hpy8I	GTNNAC	2 cut(s)	518, 526
HpyAV	CCTTC	3 cut(s)	102, 335, 427
HpyCH4III	ACNGT	3 cut(s)	31, 530, 577
HpyCH4V	TGCA	1 cut(s)	237
HspAI	GCGC	1 cut(s)	171
Kpn2I	TCCGGA	1 cut(s)	213
Kzo9I	GATC	1 cut(s)	7
LmnI	GCTCC	2 cut(s)	79, 564
LweI	GCATC	1 cut(s)	124
MaeI	CTAG	1 cut(s)	378
MaeIII	GTNAC	3 cut(s)	31, 571, 577
MalI	GATC	1 cut(s)	9
MboI	GATC	1 cut(s)	7
MboII	GAAGA	5 cut(s)	17, 74, 89, 127, 452
MflI	RGATCY	1 cut(s)	7
MluCI	AATT	3 cut(s)	407, 450, 493
MlyI	GAGTC	1 cut(s)	554
MmeI	TCCRAC	2 cut(s)	171, 451
MnlI	CCTC	6 cut(s)	93, 111, 188, 199, 204, 467
MroI	TCCGGA	1 cut(s)	213
MspI	CCGG	2 cut(s)	214, 338
MvnI	CGCG	2 cut(s)	44, 171
NdeI	CATATG	1 cut(s)	463
NdeII	GATC	1 cut(s)	7
NlaIV	GGNNCC	1 cut(s)	218
NmuCI	GTSAC	1 cut(s)	31
NruI	TCGCGA	1 cut(s)	44
PcsI	WCGNNNNNNNCGW	1 cut(s)	41
PfeI	GAWTC	1 cut(s)	187
PkrI	GCNGC	1 cut(s)	244
PleI	GAGTC	1 cut(s)	553
PpsI	GAGTC	1 cut(s)	553
PspFI	CCCAGC	2 cut(s)	16, 21
PspN4I	GGNNCC	1 cut(s)	218
PspPI	GGNCC	1 cut(s)	216
PsuI	RGATCY	1 cut(s)	7
RruI	TCGCGA	1 cut(s)	44
SatI	GCNGC	1 cut(s)	243
Sau3AI	GATC	1 cut(s)	7
Sau96I	GGNCC	1 cut(s)	216
SchI	GAGTC	1 cut(s)	554
SfaNI	GCATC	1 cut(s)	124
SinI	GGWCC	1 cut(s)	216
SmlI	CTYRAG	2 cut(s)	179, 203
SmoI	CTYRAG	2 cut(s)	179, 203
Sse9I	AATT	3 cut(s)	407, 450, 493
SsiI	CCGC	1 cut(s)	242
SspMI	CTAG	1 cut(s)	378
TaaI	ACNGT	3 cut(s)	31, 530, 577
TaqI	TCGA	2 cut(s)	229, 553
TasI	AATT	3 cut(s)	407, 450, 493
TauI	GCSGC	1 cut(s)	245
TfiI	GAWTC	1 cut(s)	187
TscAI	CASTG	1 cut(s)	520
TseFI	GTSAC	1 cut(s)	31
Tsp45I	GTSAC	1 cut(s)	31
TspDTI	ATGAA	1 cut(s)	487
TspGWI	ACGGA	1 cut(s)	402
TspRI	CASTG	1 cut(s)	520
VpaK11BI	GGWCC	1 cut(s)	216
XapI	RAATTY	3 cut(s)	407, 450, 493
XmiI	GTMKAC	1 cut(s)	525
XspI	CTAG	1 cut(s)	378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.