RLG00000028180

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001501
Physical Location & Seq
Forward (+)
19775459 .. 19777259
1801 bp
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UTR
Exon/CDS
Intron
RLM00000028180

Sequence Viewer

Length: 558 bp
ATGGAAGAACCAACGCCAACGCCACCGCCACCGCCACCGCCACCGACCCAAATCCCAAATCCTCCTCCGAACTCAGTCGAAACTCCCCCTCATCTTCATCCAAAGACCAAGAAGAGACCCCTTGACAGTGATGCCCAAATCCCCAACTCCGGCTACTTCAAGATTCGTGCCGTCCTCAGAGACATTCGTCCTAATGTTCTTGAGGTTCTCCGGACCCCTGACTTTCAGAAGTGTAAGGCAGCCAACGAAATTCAAGAACAGGTGAAGCTTCTGATGGAACTATACAAACAGATGACAGCACAAGCACTTTCCGCACCAAGATGTGACAATGTGCCAGAAGGGCAGCTTTCTTCTGGTGCGCCATCAGAACATAGTCTTCCTTCAGGTATATCTGGTCAGAAGCAGCAGGCTGAAGATGAACCAAATAAAGGGACTTATGTTGTTGGAGGGTCAGCCTTTGGCTGGAACTTCATCACCTTTTCCACCACGGAACCGGTCTATTATGGTATGACAAAGGAGTCATTTCGAGCACAAGCAGCAAAGCTGACAACTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

186

Amino Acids

20.27

Weight (kDa)

6.83

Isoelectric Point (pI)

47.86

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 517
AccIII TCCGGA 1 cut(s) 210
AciI CCGC 4 cut(s) 26, 32, 38, 312
AcsI RAATTY 1 cut(s) 249
AcuI CTGAAG 2 cut(s) 366, 432
AfiI CCNNNNNNNGG 3 cut(s) 149, 428, 462
AgeI ACCGGT 1 cut(s) 493
AgsI TTSAA 2 cut(s) 160, 254
AluBI AGCT 3 cut(s) 268, 346, 544
AluI AGCT 3 cut(s) 268, 346, 544
Alw21I GWGCWC 1 cut(s) 532
Alw26I GTCTC 2 cut(s) 109, 174
Aor13HI TCCGGA 1 cut(s) 210
ApeKI GCWGC 4 cut(s) 239, 343, 403, 536
ApoI RAATTY 1 cut(s) 249
AsiGI ACCGGT 1 cut(s) 493
AspLEI GCGC 1 cut(s) 361
AspS9I GGNCC 1 cut(s) 213
AsuHPI GGTGA 2 cut(s) 274, 466
AvaII GGWCC 1 cut(s) 213
BbsI GAAGAC 1 cut(s) 368
Bbv12I GWGCWC 1 cut(s) 532
BbvI GCAGC 4 cut(s) 251, 355, 415, 548
BccI CCATC 2 cut(s) 268, 370
BceAI ACGGC 1 cut(s) 155
BcoDI GTCTC 2 cut(s) 109, 174
BglI GCCNNNNNGGC 1 cut(s) 340
BisI GCNGC 4 cut(s) 240, 344, 404, 537
BlsI GCNGC 4 cut(s) 241, 345, 405, 538
Bme18I GGWCC 1 cut(s) 213
BmgT120I GGNCC 1 cut(s) 213
BmiI GGNNCC 2 cut(s) 215, 492
BmsI GCATC 1 cut(s) 121
BoxI GACNNNNGTC 1 cut(s) 186
BpiI GAAGAC 1 cut(s) 368
BpuEI CTTGAG 1 cut(s) 221
BsaI GGTCTC 1 cut(s) 109
BsaJI CCNNGG 1 cut(s) 486
BsaWI WCCGGW 2 cut(s) 210, 493
Bsc4I CCNNNNNNNGG 3 cut(s) 149, 428, 462
Bse118I RCCGGY 1 cut(s) 493
BseAI TCCGGA 1 cut(s) 210
BseDI CCNNGG 1 cut(s) 486
BseGI GGATG 1 cut(s) 97
BseLI CCNNNNNNNGG 3 cut(s) 149, 428, 462
BseMII CTCAG 2 cut(s) 87, 190
BseRI GAGGAG 1 cut(s) 54
BseXI GCAGC 4 cut(s) 251, 355, 415, 548
BshTI ACCGGT 1 cut(s) 493
BsiHKAI GWGCWC 1 cut(s) 532
BsiSI CCGG 3 cut(s) 150, 211, 494
BslFI GGGAC 1 cut(s) 445
BslI CCNNNNNNNGG 3 cut(s) 149, 428, 462
BsmAI GTCTC 2 cut(s) 109, 174
BsmFI GGGAC 1 cut(s) 445
Bso31I GGTCTC 1 cut(s) 109
Bsp1286I GDGCHC 1 cut(s) 532
Bsp13I TCCGGA 1 cut(s) 210
BspACI CCGC 4 cut(s) 26, 32, 38, 312
BspCNI CTCAG 2 cut(s) 86, 189
BspEI TCCGGA 1 cut(s) 210
BspLI GGNNCC 2 cut(s) 215, 492
BspTNI GGTCTC 1 cut(s) 109
BsrFI RCCGGY 1 cut(s) 493
BssAI RCCGGY 1 cut(s) 493
BssECI CCNNGG 1 cut(s) 486
Bst4CI ACNGT 1 cut(s) 128
Bst6I CTCTTC 1 cut(s) 107
BstC8I GCNNGC 1 cut(s) 408
BstDEI CTNAG 2 cut(s) 73, 176
BstDSI CCRYGG 1 cut(s) 486
BstF5I GGATG 1 cut(s) 97
BstHHI GCGC 1 cut(s) 361
BstMAI GTCTC 2 cut(s) 109, 174
BstMWI GCNNNNNNNGC 3 cut(s) 311, 340, 536
BstPAI GACNNNNGTC 1 cut(s) 186
BstV1I GCAGC 4 cut(s) 251, 355, 415, 548
BstV2I GAAGAC 1 cut(s) 368
BtgI CCRYGG 1 cut(s) 486
BtsCI GGATG 1 cut(s) 97
BtsIMutI CAGTG 1 cut(s) 133
Cac8I GCNNGC 1 cut(s) 408
CfoI GCGC 1 cut(s) 361
Cfr10I RCCGGY 1 cut(s) 493
Cfr13I GGNCC 1 cut(s) 213
CspAI ACCGGT 1 cut(s) 493
CviJI RGCY 8 cut(s) 153, 242, 268, 346, 410, 455, 462, 544
CviKI_1 RGCY 8 cut(s) 153, 242, 268, 346, 410, 455, 462, 544
DdeI CTNAG 2 cut(s) 73, 176
DrdI GACNNNNNNGTC 1 cut(s) 517
DseDI GACNNNNNNGTC 1 cut(s) 517
Eam1104I CTCTTC 1 cut(s) 107
EarI CTCTTC 1 cut(s) 107
Eco31I GGTCTC 1 cut(s) 109
Eco47I GGWCC 1 cut(s) 213
Eco57I CTGAAG 2 cut(s) 366, 432
FaiI YATR 7 cut(s) 283, 372, 389, 438, 504, 509, 556
FalI AAGNNNNNCTT 2 cut(s) 330, 362
FaqI GGGAC 1 cut(s) 445
Fnu4HI GCNGC 4 cut(s) 240, 344, 404, 537
FokI GGATG 1 cut(s) 84
Fsp4HI GCNGC 4 cut(s) 240, 344, 404, 537
GlaI GCGC 1 cut(s) 360
GluI GCNGC 4 cut(s) 240, 344, 404, 537
HapII CCGG 3 cut(s) 150, 211, 494
HhaI GCGC 1 cut(s) 361
Hin6I GCGC 1 cut(s) 359
HinP1I GCGC 1 cut(s) 359
HindIII AAGCTT 1 cut(s) 266
HinfI GANTC 2 cut(s) 163, 518
HpaII CCGG 3 cut(s) 150, 211, 494
HphI GGTGA 2 cut(s) 274, 466
Hpy188I TCNGA 6 cut(s) 69, 179, 228, 273, 367, 399
Hpy188III TCNNGA 4 cut(s) 160, 200, 211, 254
HpyAV CCTTC 2 cut(s) 332, 390
HpyCH4III ACNGT 1 cut(s) 128
HpyCH4V TGCA 1 cut(s) 554
HpyF10VI GCNNNNNNNGC 3 cut(s) 311, 340, 536
HpyF3I CTNAG 2 cut(s) 73, 176
HspAI GCGC 1 cut(s) 359
Kpn2I TCCGGA 1 cut(s) 210
Lsp1109I GCAGC 4 cut(s) 251, 355, 415, 548
LweI GCATC 1 cut(s) 121
MaeIII GTNAC 1 cut(s) 323
MboII GAAGA 6 cut(s) 17, 86, 124, 342, 368, 425
MhlI GDGCHC 1 cut(s) 532
MluCI AATT 1 cut(s) 249
MlyI GAGTC 1 cut(s) 527
MmeI TCCRAC 1 cut(s) 424
MnlI CCTC 6 cut(s) 72, 75, 99, 185, 196, 440
MroI TCCGGA 1 cut(s) 210
MslI CAYNNNNRTG 1 cut(s) 319
MspI CCGG 3 cut(s) 150, 211, 494
MwoI GCNNNNNNNGC 3 cut(s) 311, 340, 536
NlaIV GGNNCC 2 cut(s) 215, 492
NmuCI GTSAC 1 cut(s) 323
PfeI GAWTC 1 cut(s) 163
PinAI ACCGGT 1 cut(s) 493
PkrI GCNGC 4 cut(s) 241, 345, 405, 538
PleI GAGTC 1 cut(s) 526
PpsI GAGTC 1 cut(s) 526
PshAI GACNNNNGTC 1 cut(s) 186
PspN4I GGNNCC 2 cut(s) 215, 492
PspPI GGNCC 1 cut(s) 213
RseI CAYNNNNRTG 1 cut(s) 319
SatI GCNGC 4 cut(s) 240, 344, 404, 537
Sau96I GGNCC 1 cut(s) 213
SchI GAGTC 1 cut(s) 527
SduI GDGCHC 1 cut(s) 532
SetI ASST 7 cut(s) 207, 264, 270, 348, 388, 479, 546
SfaNI GCATC 1 cut(s) 121
SinI GGWCC 1 cut(s) 213
SmiMI CAYNNNNRTG 1 cut(s) 319
SmlI CTYRAG 1 cut(s) 200
SmoI CTYRAG 1 cut(s) 200
Sse9I AATT 1 cut(s) 249
SsiI CCGC 4 cut(s) 26, 32, 38, 312
TaaI ACNGT 1 cut(s) 128
TaqI TCGA 2 cut(s) 78, 526
TasI AATT 1 cut(s) 249
TfiI GAWTC 1 cut(s) 163
TscAI CASTG 1 cut(s) 133
TseFI GTSAC 1 cut(s) 323
TseI GCWGC 4 cut(s) 239, 343, 403, 536
Tsp45I GTSAC 1 cut(s) 323
TspDTI ATGAA 3 cut(s) 86, 432, 460
TspGWI ACGGA 1 cut(s) 503
TspRI CASTG 1 cut(s) 133
VpaK11BI GGWCC 1 cut(s) 213
XapI RAATTY 1 cut(s) 249
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.