Rw1G036960

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0001501
Physical Location & Seq
Reverse (-)
64727585 .. 64729424
1840 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G036960.1

Sequence Viewer

Length: 609 bp
ATGGAAGACCCAAAATCAAAACGTGTTGAGAGCAGAAAGCCACACATGACAGCAACAACGCCACCTCCACATGGAGCAAGCCCACCCCAAAAACCCACTTGTCTTCCTCGCCAAAACCAGACCCAGAAGCAGACCGACGTCAAGAAGCGAAAGCTTTCCAACACCAACACGGAGAAAGACTCCCCCTACTTCAAAATCCGCGCTCTCCTTCAACAACTCCGTCCTCATTTTATTGAGGTTCTTCAAACACCTGATTTTCGGAACTGTAAAGCAGCTGATGAGATTCAAAAACAGGTGAAGCTTCTCATGGCTCTAAACAAACGAATGACCATGGATACTGGAACACAGAAGAAGTTTGCATCAGAACATCAACAGCATTCGTCCCATGCGGGCTGCCTGAGAAAGAAAACAAAGATGATTACCAACACAGCAGGAAGCTACATTGTGGGTGGTTCGGTTTTTGGTTGGAACTTCATCACATTTTCAGGCAGTAAACCAGTCTATTATGGTGTAACAAAGGAGGCATATCGAAGCAGCCACATAAGATCAGGAGATGCTTCTATGCTTTCAACAGATGGTTCTTCTGGACAAGGGAGACCATCTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

202

Amino Acids

22.63

Weight (kDa)

10.07

Isoelectric Point (pI)

48.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 141
AccII CGCG 1 cut(s) 201
AciI CCGC 2 cut(s) 199, 389
AcyI GRCGYC 1 cut(s) 138
AfiI CCNNNNNNNGG 1 cut(s) 71
AflIII ACRYGT 1 cut(s) 22
AgsI TTSAA 5 cut(s) 193, 212, 245, 287, 570
AluBI AGCT 4 cut(s) 154, 275, 301, 438
AluI AGCT 4 cut(s) 154, 275, 301, 438
Alw26I GTCTC 1 cut(s) 589
ApeKI GCWGC 3 cut(s) 272, 393, 534
Asp700I GAANNNNTTC 1 cut(s) 154
AspLEI GCGC 1 cut(s) 203
AsuHPI GGTGA 1 cut(s) 307
BbsI GAAGAC 2 cut(s) 12, 95
BbvI GCAGC 3 cut(s) 284, 380, 546
BccI CCATC 2 cut(s) 569, 607
BciVI GTATCC 1 cut(s) 328
BcoDI GTCTC 1 cut(s) 589
BfuI GTATCC 1 cut(s) 328
BisI GCNGC 3 cut(s) 273, 394, 535
BlsI GCNGC 3 cut(s) 274, 395, 536
BmsI GCATC 2 cut(s) 368, 544
BoxI GACNNNNGTC 1 cut(s) 137
BpiI GAAGAC 2 cut(s) 12, 95
BplI GAGNNNNNCTC 2 cut(s) 164, 196
BsaHI GRCGYC 1 cut(s) 138
BsaI GGTCTC 1 cut(s) 589
BsaJI CCNNGG 1 cut(s) 330
BsaXI ACNNNNNCTCC 2 cut(s) 49, 79
Bsc4I CCNNNNNNNGG 1 cut(s) 71
Bse1I ACTGG 2 cut(s) 343, 497
BseDI CCNNGG 1 cut(s) 330
BseLI CCNNNNNNNGG 1 cut(s) 71
BseMII CTCAG 1 cut(s) 389
BseNI ACTGG 2 cut(s) 343, 497
BseXI GCAGC 3 cut(s) 284, 380, 546
Bsh1236I CGCG 1 cut(s) 201
BslFI GGGAC 1 cut(s) 367
BslI CCNNNNNNNGG 1 cut(s) 71
BsmAI GTCTC 1 cut(s) 589
BsmFI GGGAC 1 cut(s) 367
BsmI GAATGC 1 cut(s) 376
Bso31I GGTCTC 1 cut(s) 589
Bsp143I GATC 1 cut(s) 545
Bsp19I CCATGG 1 cut(s) 330
BspACI CCGC 2 cut(s) 199, 389
BspCNI CTCAG 1 cut(s) 390
BspFNI CGCG 1 cut(s) 201
BspTNI GGTCTC 1 cut(s) 589
BsrI ACTGG 2 cut(s) 343, 497
BssECI CCNNGG 1 cut(s) 330
BssMI GATC 1 cut(s) 545
BssNI GRCGYC 1 cut(s) 138
BssT1I CCWWGG 1 cut(s) 330
Bst4CI ACNGT 1 cut(s) 266
BstACI GRCGYC 1 cut(s) 138
BstC8I GCNNGC 2 cut(s) 79, 391
BstDEI CTNAG 1 cut(s) 398
BstDSI CCRYGG 1 cut(s) 330
BstFNI CGCG 1 cut(s) 201
BstHHI GCGC 1 cut(s) 203
BstKTI GATC 1 cut(s) 548
BstMAI GTCTC 1 cut(s) 589
BstMBI GATC 1 cut(s) 545
BstPAI GACNNNNGTC 1 cut(s) 137
BstUI CGCG 1 cut(s) 201
BstV1I GCAGC 3 cut(s) 284, 380, 546
BstV2I GAAGAC 2 cut(s) 12, 95
BsuI GTATCC 1 cut(s) 328
BtgI CCRYGG 1 cut(s) 330
Cac8I GCNNGC 2 cut(s) 79, 391
CfoI GCGC 1 cut(s) 203
CviAII CATG 5 cut(s) 46, 71, 307, 331, 386
CviJI RGCY 9 cut(s) 40, 81, 154, 275, 301, 311, 393, 438, 537
CviKI_1 RGCY 9 cut(s) 40, 81, 154, 275, 301, 311, 393, 438, 537
DdeI CTNAG 1 cut(s) 398
DpnI GATC 1 cut(s) 547
DpnII GATC 1 cut(s) 545
Eco130I CCWWGG 1 cut(s) 330
Eco31I GGTCTC 1 cut(s) 589
EcoT14I CCWWGG 1 cut(s) 330
ErhI CCWWGG 1 cut(s) 330
FaeI CATG 5 cut(s) 49, 74, 310, 334, 389
FaqI GGGAC 1 cut(s) 367
FatI CATG 5 cut(s) 45, 70, 306, 330, 385
FauI CCCGC 1 cut(s) 382
Fnu4HI GCNGC 3 cut(s) 273, 394, 535
Fsp4HI GCNGC 3 cut(s) 273, 394, 535
GlaI GCGC 1 cut(s) 202
GluI GCNGC 3 cut(s) 273, 394, 535
HhaI GCGC 1 cut(s) 203
Hin1I GRCGYC 1 cut(s) 138
Hin1II CATG 5 cut(s) 49, 74, 310, 334, 389
Hin6I GCGC 1 cut(s) 201
HinP1I GCGC 1 cut(s) 201
HindIII AAGCTT 2 cut(s) 152, 299
HinfI GANTC 2 cut(s) 179, 283
HphI GGTGA 1 cut(s) 307
Hpy166II GTNNAC 1 cut(s) 494
Hpy188I TCNGA 2 cut(s) 261, 364
Hpy188III TCNNGA 3 cut(s) 142, 549, 585
Hpy8I GTNNAC 1 cut(s) 494
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 1 cut(s) 218
HpyCH4III ACNGT 1 cut(s) 266
HpyCH4IV ACGT 2 cut(s) 22, 138
HpyCH4V TGCA 1 cut(s) 359
HpyF3I CTNAG 1 cut(s) 398
HpySE526I ACGT 2 cut(s) 22, 138
Hsp92I GRCGYC 1 cut(s) 138
Hsp92II CATG 5 cut(s) 49, 74, 310, 334, 389
HspAI GCGC 1 cut(s) 201
Kzo9I GATC 1 cut(s) 545
LmnI GCTCC 1 cut(s) 74
Lsp1109I GCAGC 3 cut(s) 284, 380, 546
LweI GCATC 2 cut(s) 368, 544
MaeII ACGT 2 cut(s) 22, 138
MaeIII GTNAC 1 cut(s) 511
MalI GATC 1 cut(s) 547
MboI GATC 1 cut(s) 545
MboII GAAGA 5 cut(s) 17, 95, 233, 361, 573
MlyI GAGTC 1 cut(s) 173
MmeI TCCRAC 2 cut(s) 183, 446
MnlI CCTC 5 cut(s) 75, 117, 229, 234, 514
MroXI GAANNNNTTC 1 cut(s) 154
MspA1I CMGCKG 1 cut(s) 275
Mva1269I GAATGC 1 cut(s) 376
MvnI CGCG 1 cut(s) 201
NcoI CCATGG 1 cut(s) 330
NdeII GATC 1 cut(s) 545
NlaIII CATG 5 cut(s) 49, 74, 310, 334, 389
PctI GAATGC 1 cut(s) 376
PdmI GAANNNNTTC 1 cut(s) 154
PfeI GAWTC 1 cut(s) 283
PkrI GCNGC 3 cut(s) 274, 395, 536
PleI GAGTC 1 cut(s) 173
PpsI GAGTC 1 cut(s) 173
PshAI GACNNNNGTC 1 cut(s) 137
PvuII CAGCTG 1 cut(s) 275
SatI GCNGC 3 cut(s) 273, 394, 535
Sau3AI GATC 1 cut(s) 545
SchI GAGTC 1 cut(s) 173
SfaNI GCATC 2 cut(s) 368, 544
SsiI CCGC 2 cut(s) 199, 389
StyI CCWWGG 1 cut(s) 330
TaaI ACNGT 1 cut(s) 266
TaiI ACGT 2 cut(s) 25, 141
TaqI TCGA 1 cut(s) 529
TaqII GACCGA 1 cut(s) 149
TfiI GAWTC 1 cut(s) 283
TseI GCWGC 3 cut(s) 272, 393, 534
TspDTI ATGAA 1 cut(s) 463
TspGWI ACGGA 2 cut(s) 185, 209
XmnI GAANNNNTTC 1 cut(s) 154
ZraI GACGTC 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.