Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00485

Orthogroup ID

OG0001501

Physical Location & Seq

Genomic Coordinates Reverse (-)

8602 .. 10409

Gene Structure 1808 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G011190.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

ATGGAAGAACCAACGCCACCGCCACCGCCACCGCCACCGCCACCGCCACCGACCCAAATCCCAAATCCTCCTCCGAACTCAGTCGAAACTCCCCCTCATCTTCATCCAAAGACCAAGAAGAGACCCCTTGACAGTGATGCCCAAATCCCCAACTCCGGCTACTTCAAGATTCGTGCCGTCCTCAGAGACATTCGTCCTAATGTTCTTGAGGTTCTCCGGACCCCTGACTTTCAGAAGTGTAAGGCAGCCAACGAAATTCAAGAACAGGTGAAGCTTCTGATGGAACTGTACAAACAGATGACAGCACAAGCACTTTCTGCACCAAGATGTGACAATGTGCCAGAAGGGCAGCTTTCTTCTGGTGCGCCATCAGAACATAATCTTCCTTCAGGTATATCTGGTCAGAAGCAGCAGGCTGAGGATGAACCAAATAAAGGGACTTATGTTGTTGGAGGGTCAGCCTTTGGCTGGAACTTCATCACCTTTTCCACCACGGAACCGGTCTATTATGGTATGACAAAGGAGTCATTTCGAGCACAAGCAGCAAAGCTGACAACTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

187

Amino Acids

20.49

Weight (kDa)

6.83

Isoelectric Point (pI)

52.84

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01730
fragaria_vesca	FvH4_7g14150 FvH4_7g29600
malus_domestica	MD01G1056800.v1.1 MD01G1057500.v1.1 MD01G1202200.v1.1 MD07G1139200.v1.1
prunus_persica	Prupe.2G167900_v2.0.a1 Prupe.2G295600_v2.0.a1 Prupe.2G295600_v2.0.a1
pyrus_communis	pycom01g08560 pycom01g08690 pycom01g08730 pycom01g21180 pycom07g13620 pycom07g13660 pycom07g13690 pycom07g13710 pycom07g13950
rosa_chinensis	RchiOBHm_Chr1g0354801 RchiOBHm_Chr1g0355051 RchiOBHm_Chr1g0377581
rosa_laevigata	RLG00000026515 RLG00000028180
rosa_multiflora	Rmu_sc0002832.1_g000009 Rmu_sc0003115.1_g000028 Rmu_sc0003940.1_g000007 Rmu_sc0012587.1_g000007 Rmu_sc0016725.1_g000003
rosa_roxburghii	Rroxscaffold_4G00281220 Rroxscaffold_4G00300710
rosa_rugosa	Rorug01G0244700 Rorug01G0403600
rosa_samantha	Rh1AG255700 Rh1AG257000 Rh1AG429200 Rh1BG226300 Rh1BG380100 Rh1CG238800 Rh1CG239100 Rh1CG240600 Rh1CG394300 Rh1DG253900 Rh1DG411300
rosa_wichuraiana	Rw0G011190 Rw1G022380 Rw1G022430 Rw1G022580 Rw1G022650 Rw1G022660 Rw1G036960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	523
AccIII	TCCGGA	1 cut(s)	216
AciI	CCGC	5 cut(s)	20, 26, 32, 38, 44
AcsI	RAATTY	1 cut(s)	255
AcuI	CTGAAG	1 cut(s)	372
AfaI	GTAC	1 cut(s)	290
AfiI	CCNNNNNNNGG	3 cut(s)	155, 434, 468
AgeI	ACCGGT	1 cut(s)	499
AgsI	TTSAA	2 cut(s)	166, 260
AluBI	AGCT	3 cut(s)	274, 352, 550
AluI	AGCT	3 cut(s)	274, 352, 550
Alw21I	GWGCWC	1 cut(s)	538
Alw26I	GTCTC	2 cut(s)	115, 180
Aor13HI	TCCGGA	1 cut(s)	216
ApeKI	GCWGC	4 cut(s)	245, 349, 409, 542
ApoI	RAATTY	1 cut(s)	255
AsiGI	ACCGGT	1 cut(s)	499
AspLEI	GCGC	1 cut(s)	367
AspS9I	GGNCC	1 cut(s)	219
AsuHPI	GGTGA	2 cut(s)	280, 472
AvaII	GGWCC	1 cut(s)	219
Bbv12I	GWGCWC	1 cut(s)	538
BbvCI	CCTCAGC	1 cut(s)	417
BbvI	GCAGC	4 cut(s)	257, 361, 421, 554
BccI	CCATC	2 cut(s)	274, 376
BceAI	ACGGC	1 cut(s)	161
BcoDI	GTCTC	2 cut(s)	115, 180
BglI	GCCNNNNNGGC	1 cut(s)	346
BisI	GCNGC	4 cut(s)	246, 350, 410, 543
BlsI	GCNGC	4 cut(s)	247, 351, 411, 544
Bme18I	GGWCC	1 cut(s)	219
BmgT120I	GGNCC	1 cut(s)	219
BmiI	GGNNCC	2 cut(s)	221, 498
BmsI	GCATC	1 cut(s)	127
BoxI	GACNNNNGTC	1 cut(s)	192
Bpu10I	CCTNAGC	1 cut(s)	417
BpuEI	CTTGAG	1 cut(s)	227
BsaI	GGTCTC	1 cut(s)	115
BsaJI	CCNNGG	1 cut(s)	492
BsaWI	WCCGGW	2 cut(s)	216, 499
Bsc4I	CCNNNNNNNGG	3 cut(s)	155, 434, 468
Bse118I	RCCGGY	1 cut(s)	499
BseAI	TCCGGA	1 cut(s)	216
BseDI	CCNNGG	1 cut(s)	492
BseGI	GGATG	2 cut(s)	103, 427
BseLI	CCNNNNNNNGG	3 cut(s)	155, 434, 468
BseMII	CTCAG	3 cut(s)	93, 196, 408
BseRI	GAGGAG	1 cut(s)	60
BseXI	GCAGC	4 cut(s)	257, 361, 421, 554
BsgI	GTGCAG	1 cut(s)	303
BshTI	ACCGGT	1 cut(s)	499
BsiHKAI	GWGCWC	1 cut(s)	538
BsiSI	CCGG	3 cut(s)	156, 217, 500
BslFI	GGGAC	1 cut(s)	451
BslI	CCNNNNNNNGG	3 cut(s)	155, 434, 468
BsmAI	GTCTC	2 cut(s)	115, 180
BsmFI	GGGAC	1 cut(s)	451
Bso31I	GGTCTC	1 cut(s)	115
Bsp1286I	GDGCHC	1 cut(s)	538
Bsp13I	TCCGGA	1 cut(s)	216
Bsp1407I	TGTACA	1 cut(s)	288
BspACI	CCGC	5 cut(s)	20, 26, 32, 38, 44
BspCNI	CTCAG	3 cut(s)	92, 195, 409
BspEI	TCCGGA	1 cut(s)	216
BspLI	GGNNCC	2 cut(s)	221, 498
BspTNI	GGTCTC	1 cut(s)	115
BsrFI	RCCGGY	1 cut(s)	499
BsrGI	TGTACA	1 cut(s)	288
BssAI	RCCGGY	1 cut(s)	499
BssECI	CCNNGG	1 cut(s)	492
Bst4CI	ACNGT	2 cut(s)	134, 288
Bst6I	CTCTTC	1 cut(s)	113
BstAPI	GCANNNNNTGC	1 cut(s)	317
BstAUI	TGTACA	1 cut(s)	288
BstC8I	GCNNGC	1 cut(s)	414
BstDEI	CTNAG	3 cut(s)	79, 182, 417
BstDSI	CCRYGG	1 cut(s)	492
BstF5I	GGATG	2 cut(s)	103, 427
BstHHI	GCGC	1 cut(s)	367
BstMAI	GTCTC	2 cut(s)	115, 180
BstMWI	GCNNNNNNNGC	3 cut(s)	317, 346, 542
BstPAI	GACNNNNGTC	1 cut(s)	192
BstV1I	GCAGC	4 cut(s)	257, 361, 421, 554
BtgI	CCRYGG	1 cut(s)	492
BtsCI	GGATG	2 cut(s)	103, 427
BtsIMutI	CAGTG	1 cut(s)	139
Cac8I	GCNNGC	1 cut(s)	414
CfoI	GCGC	1 cut(s)	367
Cfr10I	RCCGGY	1 cut(s)	499
Cfr13I	GGNCC	1 cut(s)	219
Csp6I	GTAC	1 cut(s)	289
CspAI	ACCGGT	1 cut(s)	499
CviJI	RGCY	8 cut(s)	159, 248, 274, 352, 416, 461, 468, 550
CviKI_1	RGCY	8 cut(s)	159, 248, 274, 352, 416, 461, 468, 550
CviQI	GTAC	1 cut(s)	289
DdeI	CTNAG	3 cut(s)	79, 182, 417
DrdI	GACNNNNNNGTC	1 cut(s)	523
DseDI	GACNNNNNNGTC	1 cut(s)	523
Eam1104I	CTCTTC	1 cut(s)	113
EarI	CTCTTC	1 cut(s)	113
Eco31I	GGTCTC	1 cut(s)	115
Eco47I	GGWCC	1 cut(s)	219
Eco57I	CTGAAG	1 cut(s)	372
FaiI	YATR	6 cut(s)	378, 395, 444, 510, 515, 562
FalI	AAGNNNNNCTT	2 cut(s)	336, 368
FaqI	GGGAC	1 cut(s)	451
Fnu4HI	GCNGC	4 cut(s)	246, 350, 410, 543
FokI	GGATG	2 cut(s)	90, 434
Fsp4HI	GCNGC	4 cut(s)	246, 350, 410, 543
GlaI	GCGC	1 cut(s)	366
GluI	GCNGC	4 cut(s)	246, 350, 410, 543
HapII	CCGG	3 cut(s)	156, 217, 500
HhaI	GCGC	1 cut(s)	367
Hin6I	GCGC	1 cut(s)	365
HinP1I	GCGC	1 cut(s)	365
HindIII	AAGCTT	1 cut(s)	272
HinfI	GANTC	2 cut(s)	169, 524
HpaII	CCGG	3 cut(s)	156, 217, 500
HphI	GGTGA	2 cut(s)	280, 472
Hpy188I	TCNGA	6 cut(s)	75, 185, 234, 279, 373, 405
Hpy188III	TCNNGA	4 cut(s)	166, 206, 217, 260
HpyAV	CCTTC	2 cut(s)	338, 396
HpyCH4III	ACNGT	2 cut(s)	134, 288
HpyCH4V	TGCA	2 cut(s)	320, 560
HpyF10VI	GCNNNNNNNGC	3 cut(s)	317, 346, 542
HpyF3I	CTNAG	3 cut(s)	79, 182, 417
HspAI	GCGC	1 cut(s)	365
Kpn2I	TCCGGA	1 cut(s)	216
Lsp1109I	GCAGC	4 cut(s)	257, 361, 421, 554
LweI	GCATC	1 cut(s)	127
MaeIII	GTNAC	1 cut(s)	329
MboII	GAAGA	5 cut(s)	17, 92, 130, 348, 374
MhlI	GDGCHC	1 cut(s)	538
MluCI	AATT	1 cut(s)	255
MlyI	GAGTC	1 cut(s)	533
MmeI	TCCRAC	1 cut(s)	430
MnlI	CCTC	7 cut(s)	78, 81, 105, 191, 202, 412, 446
MroI	TCCGGA	1 cut(s)	216
MslI	CAYNNNNRTG	1 cut(s)	325
MspI	CCGG	3 cut(s)	156, 217, 500
MwoI	GCNNNNNNNGC	3 cut(s)	317, 346, 542
NlaIV	GGNNCC	2 cut(s)	221, 498
NmuCI	GTSAC	1 cut(s)	329
PfeI	GAWTC	1 cut(s)	169
PinAI	ACCGGT	1 cut(s)	499
PkrI	GCNGC	4 cut(s)	247, 351, 411, 544
PleI	GAGTC	1 cut(s)	532
PpsI	GAGTC	1 cut(s)	532
PshAI	GACNNNNGTC	1 cut(s)	192
PspN4I	GGNNCC	2 cut(s)	221, 498
PspPI	GGNCC	1 cut(s)	219
RsaI	GTAC	1 cut(s)	290
RsaNI	GTAC	1 cut(s)	289
RseI	CAYNNNNRTG	1 cut(s)	325
SatI	GCNGC	4 cut(s)	246, 350, 410, 543
Sau96I	GGNCC	1 cut(s)	219
SchI	GAGTC	1 cut(s)	533
SduI	GDGCHC	1 cut(s)	538
SetI	ASST	7 cut(s)	213, 270, 276, 354, 394, 485, 552
SfaNI	GCATC	1 cut(s)	127
SinI	GGWCC	1 cut(s)	219
SmiMI	CAYNNNNRTG	1 cut(s)	325
SmlI	CTYRAG	1 cut(s)	206
SmoI	CTYRAG	1 cut(s)	206
Sse9I	AATT	1 cut(s)	255
SsiI	CCGC	5 cut(s)	20, 26, 32, 38, 44
TaaI	ACNGT	2 cut(s)	134, 288
TaqI	TCGA	2 cut(s)	84, 532
TasI	AATT	1 cut(s)	255
TatI	WGTACW	1 cut(s)	288
TfiI	GAWTC	1 cut(s)	169
TscAI	CASTG	1 cut(s)	139
TseFI	GTSAC	1 cut(s)	329
TseI	GCWGC	4 cut(s)	245, 349, 409, 542
Tsp45I	GTSAC	1 cut(s)	329
TspDTI	ATGAA	3 cut(s)	92, 438, 466
TspGWI	ACGGA	1 cut(s)	509
TspRI	CASTG	1 cut(s)	139
VpaK11BI	GGWCC	1 cut(s)	219
XapI	RAATTY	1 cut(s)	255

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.