Rh1CG238800

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
Physical Location & Seq
Reverse (-)
49719479 .. 49730365
10887 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG238800.1

Sequence Viewer

Length: 321 bp
ATGGGCATGCTCTCGAGCGAGCATCTGGAACTCTGGAAGGCTCTAGAGGTGAAGCTTCTGATGGAACTATACAAACAGATGACAGCACAAGAACTTTCCGCACCGAGATGTGACAATGTGCCAGAAGGGCAGCTTTCATCTGGTGCGCCATCAGAACATAAGCTTCCTTCAGGTATATTTGGTCAGAAGCAGCAGGCTGAAGATGAACAAAATAAAGGGACTTATGTTGTTGGAGGGTCAGCTTTTGATTGGAACTTCATCACCTTTTCCACCACGGAACCAGTCTATTATGGTATGACAAAGGAGTCATTTCGAGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

106

Amino Acids

11.85

Weight (kDa)

4.92

Isoelectric Point (pI)

51.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 304
AciI CCGC 1 cut(s) 99
AcuI CTGAAG 2 cut(s) 153, 219
AluBI AGCT 4 cut(s) 55, 133, 163, 242
AluI AGCT 4 cut(s) 55, 133, 163, 242
Ama87I CYCGRG 1 cut(s) 13
ApeKI GCWGC 2 cut(s) 130, 190
AspLEI GCGC 1 cut(s) 148
AsuHPI GGTGA 2 cut(s) 61, 253
AvaI CYCGRG 1 cut(s) 13
BbvI GCAGC 2 cut(s) 142, 202
BccI CCATC 2 cut(s) 55, 157
BfaI CTAG 1 cut(s) 44
BglI GCCNNNNNGGC 1 cut(s) 127
BisI GCNGC 2 cut(s) 131, 191
BlsI GCNGC 2 cut(s) 132, 192
BmeT110I CYCGRG 1 cut(s) 13
BmiI GGNNCC 1 cut(s) 279
BmsI GCATC 1 cut(s) 31
BsaJI CCNNGG 1 cut(s) 273
Bse1I ACTGG 1 cut(s) 281
BseDI CCNNGG 1 cut(s) 273
BseNI ACTGG 1 cut(s) 281
BseXI GCAGC 2 cut(s) 142, 202
BsiHKCI CYCGRG 1 cut(s) 13
BslFI GGGAC 1 cut(s) 232
BsmFI GGGAC 1 cut(s) 232
BsoBI CYCGRG 1 cut(s) 13
BspACI CCGC 1 cut(s) 99
BspLI GGNNCC 1 cut(s) 279
BsrI ACTGG 1 cut(s) 281
BssECI CCNNGG 1 cut(s) 273
BstC8I GCNNGC 3 cut(s) 8, 20, 195
BstDSI CCRYGG 1 cut(s) 273
BstHHI GCGC 1 cut(s) 148
BstMWI GCNNNNNNNGC 1 cut(s) 127
BstNSI RCATGY 1 cut(s) 10
BstV1I GCAGC 2 cut(s) 142, 202
BtgI CCRYGG 1 cut(s) 273
Cac8I GCNNGC 3 cut(s) 8, 20, 195
CfoI GCGC 1 cut(s) 148
CviAII CATG 1 cut(s) 7
CviJI RGCY 6 cut(s) 41, 55, 133, 163, 197, 242
CviKI_1 RGCY 6 cut(s) 41, 55, 133, 163, 197, 242
DrdI GACNNNNNNGTC 1 cut(s) 304
DseDI GACNNNNNNGTC 1 cut(s) 304
Eco57I CTGAAG 2 cut(s) 153, 219
Eco88I CYCGRG 1 cut(s) 13
FaeI CATG 1 cut(s) 10
FaiI YATR 8 cut(s) 8, 70, 159, 176, 225, 291, 296, 319
FalI AAGNNNNNCTT 2 cut(s) 117, 149
FaqI GGGAC 1 cut(s) 232
FatI CATG 1 cut(s) 6
Fnu4HI GCNGC 2 cut(s) 131, 191
Fsp4HI GCNGC 2 cut(s) 131, 191
FspBI CTAG 1 cut(s) 44
GlaI GCGC 1 cut(s) 147
GluI GCNGC 2 cut(s) 131, 191
HhaI GCGC 1 cut(s) 148
Hin1II CATG 1 cut(s) 10
Hin6I GCGC 1 cut(s) 146
HinP1I GCGC 1 cut(s) 146
HindIII AAGCTT 2 cut(s) 53, 161
HinfI GANTC 1 cut(s) 305
HphI GGTGA 2 cut(s) 61, 253
Hpy188I TCNGA 3 cut(s) 60, 154, 186
Hpy188III TCNNGA 4 cut(s) 13, 26, 34, 44
HpyAV CCTTC 3 cut(s) 31, 119, 177
HpyF10VI GCNNNNNNNGC 1 cut(s) 127
Hsp92II CATG 1 cut(s) 10
HspAI GCGC 1 cut(s) 146
LpnPI CCDG 7 cut(s) 11, 19, 126, 135, 156, 179, 294
Lsp1109I GCAGC 2 cut(s) 142, 202
LweI GCATC 1 cut(s) 31
MaeI CTAG 1 cut(s) 44
MaeIII GTNAC 1 cut(s) 110
MboII GAAGA 1 cut(s) 212
MlyI GAGTC 1 cut(s) 314
MmeI TCCRAC 1 cut(s) 211
MnlI CCTC 2 cut(s) 40, 227
MslI CAYNNNNRTG 1 cut(s) 106
MwoI GCNNNNNNNGC 1 cut(s) 127
NlaIII CATG 1 cut(s) 10
NlaIV GGNNCC 1 cut(s) 279
NmuCI GTSAC 1 cut(s) 110
NspI RCATGY 1 cut(s) 10
PaeI GCATGC 1 cut(s) 10
PaeR7I CTCGAG 1 cut(s) 13
PkrI GCNGC 2 cut(s) 132, 192
PleI GAGTC 1 cut(s) 313
PpsI GAGTC 1 cut(s) 313
PspN4I GGNNCC 1 cut(s) 279
RseI CAYNNNNRTG 1 cut(s) 106
SatI GCNGC 2 cut(s) 131, 191
SchI GAGTC 1 cut(s) 314
SetI ASST 7 cut(s) 51, 57, 135, 165, 175, 244, 266
SfaNI GCATC 1 cut(s) 31
Sfr274I CTCGAG 1 cut(s) 13
SlaI CTCGAG 1 cut(s) 13
SmiMI CAYNNNNRTG 1 cut(s) 106
SmlI CTYRAG 1 cut(s) 13
SmoI CTYRAG 1 cut(s) 13
SphI GCATGC 1 cut(s) 10
SsiI CCGC 1 cut(s) 99
SspMI CTAG 1 cut(s) 44
TaqI TCGA 2 cut(s) 14, 313
TseFI GTSAC 1 cut(s) 110
TseI GCWGC 2 cut(s) 130, 190
Tsp45I GTSAC 1 cut(s) 110
TspDTI ATGAA 3 cut(s) 126, 219, 247
TspGWI ACGGA 1 cut(s) 290
XbaI TCTAGA 1 cut(s) 43
XceI RCATGY 1 cut(s) 10
XhoI CTCGAG 1 cut(s) 13
XspI CTAG 1 cut(s) 44
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.