RLG00000026515

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0001501
Physical Location & Seq
Forward (+)
3516963 .. 3518749
1787 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000026515

Sequence Viewer

Length: 717 bp
ATGGAAGACCCAAAATCAAAACGTGTTGAGAGCAGAAAGCCACACATGACAACAACAACAACAACAACGCCACCTCCACATGGAGCAAGCCCACCCCAAAAATCCACTTGTCTTCCTCACCAAAACCAGACCCAGAAGCAGACCGACGTCAAGAAGCGAAAGCTTTCCAACACCAACACGGAGAAAGACTCCCCCTACTTCAAAATCCGCGCTCTCCTTCAACAACTCCGTCCTCATTTTATTGAGGTTCTTCAAACACCTGATTTTCGGAACTGTAAAGCAGCTGATGAGATTCAAAAACAGGTGAAGCTTCTCATGGCTCTAAACAAACAAATGACCATGGATACTGGAACACAGAAGAAGTTTGCATCAGAACATCAACAGCATTCGTCCCATACCAGGCTGCCTGCAAAAGAAGACAAAGATGGATTACCAACACAGCAGGTTCAACCTAGATGCTCTGTTGAAAAACAACTGCCTAGTGCAAAATGGACTCATTACATCCCAGATAAGAAATCATTTGTCAGCAGCCAGCTACCGGGAAGCTACATTGTGGGTGGTTCGGTTTTTGGTTGGAACTTCATCACATTTTCAGGCAGTAAGCCAGTCTATTATGGTGAAACAAAGGAGGCATATCGAAGCAGCCACATTAGATCAGGAGATGCTTCTATGCTTTCAACAGATGGTTCTTCTGGACAAGGGAGACCATCTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

239

Amino Acids

26.76

Weight (kDa)

9.73

Isoelectric Point (pI)

48.94

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 150
Acc36I ACCTGC 1 cut(s) 433
AccII CGCG 1 cut(s) 210
AciI CCGC 1 cut(s) 208
AcyI GRCGYC 1 cut(s) 147
AfiI CCNNNNNNNGG 3 cut(s) 80, 399, 538
AflIII ACRYGT 1 cut(s) 22
AgsI TTSAA 7 cut(s) 202, 221, 254, 296, 449, 467, 678
AjnI CCWGG 1 cut(s) 398
AluBI AGCT 5 cut(s) 163, 284, 310, 535, 546
AluI AGCT 5 cut(s) 163, 284, 310, 535, 546
Alw26I GTCTC 1 cut(s) 697
ApeKI GCWGC 4 cut(s) 281, 403, 528, 642
Asp700I GAANNNNTTC 1 cut(s) 163
AspLEI GCGC 1 cut(s) 212
AsuC2I CCSGG 1 cut(s) 540
AsuHPI GGTGA 3 cut(s) 110, 316, 629
BbsI GAAGAC 3 cut(s) 12, 104, 423
BbvI GCAGC 4 cut(s) 293, 390, 540, 654
BccI CCATC 3 cut(s) 419, 677, 715
BciT130I CCWGG 1 cut(s) 400
BciVI GTATCC 1 cut(s) 337
BcnI CCSGG 1 cut(s) 540
BcoDI GTCTC 1 cut(s) 697
BfaI CTAG 2 cut(s) 453, 480
BfuAI ACCTGC 1 cut(s) 433
BfuI GTATCC 1 cut(s) 337
BisI GCNGC 4 cut(s) 282, 404, 529, 643
BlsI GCNGC 4 cut(s) 283, 405, 530, 644
Bme1390I CCNGG 2 cut(s) 400, 540
BmrFI CCNGG 2 cut(s) 400, 540
BmsI GCATC 3 cut(s) 377, 446, 652
BoxI GACNNNNGTC 1 cut(s) 146
BpiI GAAGAC 3 cut(s) 12, 104, 423
BplI GAGNNNNNCTC 2 cut(s) 173, 205
BpuMI CCSGG 1 cut(s) 540
BsaHI GRCGYC 1 cut(s) 147
BsaI GGTCTC 1 cut(s) 697
BsaJI CCNNGG 1 cut(s) 339
BsaXI ACNNNNNCTCC 2 cut(s) 58, 88
Bsc4I CCNNNNNNNGG 3 cut(s) 80, 399, 538
Bse1I ACTGG 2 cut(s) 352, 605
BseBI CCWGG 1 cut(s) 400
BseDI CCNNGG 1 cut(s) 339
BseGI GGATG 1 cut(s) 501
BseLI CCNNNNNNNGG 3 cut(s) 80, 399, 538
BseNI ACTGG 2 cut(s) 352, 605
BseXI GCAGC 4 cut(s) 293, 390, 540, 654
Bsh1236I CGCG 1 cut(s) 210
BsiSI CCGG 1 cut(s) 539
BslFI GGGAC 1 cut(s) 376
BslI CCNNNNNNNGG 3 cut(s) 80, 399, 538
BsmAI GTCTC 1 cut(s) 697
BsmFI GGGAC 1 cut(s) 376
BsmI GAATGC 1 cut(s) 385
Bso31I GGTCTC 1 cut(s) 697
Bsp143I GATC 1 cut(s) 653
Bsp19I CCATGG 1 cut(s) 339
BspACI CCGC 1 cut(s) 208
BspFNI CGCG 1 cut(s) 210
BspMI ACCTGC 1 cut(s) 433
BspTNI GGTCTC 1 cut(s) 697
BsrI ACTGG 2 cut(s) 352, 605
BssECI CCNNGG 1 cut(s) 339
BssMI GATC 1 cut(s) 653
BssNI GRCGYC 1 cut(s) 147
BssT1I CCWWGG 1 cut(s) 339
Bst2UI CCWGG 1 cut(s) 400
Bst4CI ACNGT 1 cut(s) 275
BstACI GRCGYC 1 cut(s) 147
BstC8I GCNNGC 3 cut(s) 88, 408, 533
BstDSI CCRYGG 1 cut(s) 339
BstF5I GGATG 1 cut(s) 501
BstFNI CGCG 1 cut(s) 210
BstHHI GCGC 1 cut(s) 212
BstKTI GATC 1 cut(s) 656
BstMAI GTCTC 1 cut(s) 697
BstMBI GATC 1 cut(s) 653
BstNI CCWGG 1 cut(s) 400
BstPAI GACNNNNGTC 1 cut(s) 146
BstSCI CCNGG 2 cut(s) 398, 538
BstUI CGCG 1 cut(s) 210
BstV1I GCAGC 4 cut(s) 293, 390, 540, 654
BstV2I GAAGAC 3 cut(s) 12, 104, 423
BsuI GTATCC 1 cut(s) 337
BtgI CCRYGG 1 cut(s) 339
BtsCI GGATG 1 cut(s) 501
BveI ACCTGC 1 cut(s) 433
Cac8I GCNNGC 3 cut(s) 88, 408, 533
CfoI GCGC 1 cut(s) 212
CviAII CATG 4 cut(s) 46, 80, 316, 340
DpnI GATC 1 cut(s) 655
DpnII GATC 1 cut(s) 653
Eco130I CCWWGG 1 cut(s) 339
Eco31I GGTCTC 1 cut(s) 697
EcoRII CCWGG 1 cut(s) 398
EcoT14I CCWWGG 1 cut(s) 339
ErhI CCWWGG 1 cut(s) 339
FaeI CATG 4 cut(s) 49, 83, 319, 343
FaiI YATR 9 cut(s) 47, 81, 317, 341, 396, 615, 634, 671, 713
FaqI GGGAC 1 cut(s) 376
FatI CATG 4 cut(s) 45, 79, 315, 339
Fnu4HI GCNGC 4 cut(s) 282, 404, 529, 643
FokI GGATG 1 cut(s) 488
Fsp4HI GCNGC 4 cut(s) 282, 404, 529, 643
FspBI CTAG 2 cut(s) 453, 480
GlaI GCGC 1 cut(s) 211
GluI GCNGC 4 cut(s) 282, 404, 529, 643
HapII CCGG 1 cut(s) 539
HhaI GCGC 1 cut(s) 212
Hin1I GRCGYC 1 cut(s) 147
Hin1II CATG 4 cut(s) 49, 83, 319, 343
Hin6I GCGC 1 cut(s) 210
HinP1I GCGC 1 cut(s) 210
HindIII AAGCTT 2 cut(s) 161, 308
HinfI GANTC 3 cut(s) 188, 292, 493
HpaII CCGG 1 cut(s) 539
HphI GGTGA 3 cut(s) 110, 316, 629
Hpy188I TCNGA 2 cut(s) 270, 373
Hpy188III TCNNGA 3 cut(s) 151, 657, 693
Hpy99I CGWCG 1 cut(s) 149
HpyAV CCTTC 1 cut(s) 227
HpyCH4III ACNGT 1 cut(s) 275
HpyCH4IV ACGT 2 cut(s) 22, 147
HpyCH4V TGCA 3 cut(s) 368, 410, 485
HpySE526I ACGT 2 cut(s) 22, 147
Hsp92I GRCGYC 1 cut(s) 147
Hsp92II CATG 4 cut(s) 49, 83, 319, 343
HspAI GCGC 1 cut(s) 210
Kzo9I GATC 1 cut(s) 653
LmnI GCTCC 1 cut(s) 83
Lsp1109I GCAGC 4 cut(s) 293, 390, 540, 654
LweI GCATC 3 cut(s) 377, 446, 652
MaeI CTAG 2 cut(s) 453, 480
MaeII ACGT 2 cut(s) 22, 147
MalI GATC 1 cut(s) 655
MboI GATC 1 cut(s) 653
MboII GAAGA 6 cut(s) 17, 104, 242, 370, 428, 681
MlyI GAGTC 2 cut(s) 182, 487
MmeI TCCRAC 2 cut(s) 192, 554
MnlI CCTC 5 cut(s) 84, 126, 238, 243, 622
MroXI GAANNNNTTC 1 cut(s) 163
MspA1I CMGCKG 1 cut(s) 284
MspI CCGG 1 cut(s) 539
MspR9I CCNGG 2 cut(s) 400, 540
Mva1269I GAATGC 1 cut(s) 385
MvaI CCWGG 1 cut(s) 400
MvnI CGCG 1 cut(s) 210
NciI CCSGG 1 cut(s) 540
NcoI CCATGG 1 cut(s) 339
NdeII GATC 1 cut(s) 653
NlaIII CATG 4 cut(s) 49, 83, 319, 343
PctI GAATGC 1 cut(s) 385
PdmI GAANNNNTTC 1 cut(s) 163
PfeI GAWTC 1 cut(s) 292
PkrI GCNGC 4 cut(s) 283, 405, 530, 644
PleI GAGTC 2 cut(s) 182, 487
PpsI GAGTC 2 cut(s) 182, 487
PshAI GACNNNNGTC 1 cut(s) 146
Psp6I CCWGG 1 cut(s) 398
PspGI CCWGG 1 cut(s) 398
PvuII CAGCTG 1 cut(s) 284
SatI GCNGC 4 cut(s) 282, 404, 529, 643
Sau3AI GATC 1 cut(s) 653
SchI GAGTC 2 cut(s) 182, 487
ScrFI CCNGG 2 cut(s) 400, 540
SfaNI GCATC 3 cut(s) 377, 446, 652
SsiI CCGC 1 cut(s) 208
SspMI CTAG 2 cut(s) 453, 480
StyD4I CCNGG 2 cut(s) 398, 538
StyI CCWWGG 1 cut(s) 339
TaaI ACNGT 1 cut(s) 275
TaiI ACGT 2 cut(s) 25, 150
TaqI TCGA 1 cut(s) 637
TaqII GACCGA 1 cut(s) 158
TfiI GAWTC 1 cut(s) 292
TseI GCWGC 4 cut(s) 281, 403, 528, 642
TspDTI ATGAA 1 cut(s) 571
TspGWI ACGGA 2 cut(s) 194, 218
XmnI GAANNNNTTC 1 cut(s) 163
XspI CTAG 2 cut(s) 453, 480
ZraI GACGTC 1 cut(s) 148
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.