Rw1G022580

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0001501
Physical Location & Seq
Reverse (-)
47814025 .. 47820373
6349 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G022580.1

Sequence Viewer

Length: 342 bp
ATGGAAGAACCAACGCCACCGCCACCGACCCAAATCCCAAATCCTCCTCCGAACTCAGTCGAAACTCCCCCTCATCTTCATCCAAAGACCAAGAAGAGACCCCTCGACAGTGATGCCCAAATCCCCAACTCCGGCTACTTCAAGATTCGTGCCGTCCTCAGAGACATTCGTCCTAATGTTCTTGAGGTTCTCCGGACCCCTGACTTTCGGAAGTGTAAGGCAGCCAACGAAATTCAGGAACAGGTGAAGCTTCTGATGGAACTATACAAACAGATGACAGCACTATTGATCATAAGCTGCAGCCACACCAGATCACTACTCATGAAAGCAAAGAAAACGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

113

Amino Acids

12.87

Weight (kDa)

9.69

Isoelectric Point (pI)

41.66

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccIII TCCGGA 1 cut(s) 192
AciI CCGC 1 cut(s) 20
AcsI RAATTY 1 cut(s) 231
AfiI CCNNNNNNNGG 1 cut(s) 131
AgsI TTSAA 1 cut(s) 142
AluBI AGCT 2 cut(s) 250, 297
AluI AGCT 2 cut(s) 250, 297
Alw26I GTCTC 2 cut(s) 91, 156
Aor13HI TCCGGA 1 cut(s) 192
ApeKI GCWGC 3 cut(s) 221, 297, 300
ApoI RAATTY 1 cut(s) 231
AspS9I GGNCC 1 cut(s) 195
AsuHPI GGTGA 1 cut(s) 256
AvaII GGWCC 1 cut(s) 195
BbvI GCAGC 3 cut(s) 233, 284, 312
BccI CCATC 1 cut(s) 250
BceAI ACGGC 1 cut(s) 137
BcgI CGANNNNNNTGC 2 cut(s) 95, 129
BclI TGATCA 1 cut(s) 288
BcoDI GTCTC 2 cut(s) 91, 156
BfmI CTRYAG 1 cut(s) 298
BisI GCNGC 3 cut(s) 222, 298, 301
BlsI GCNGC 3 cut(s) 223, 299, 302
Bme18I GGWCC 1 cut(s) 195
BmgT120I GGNCC 1 cut(s) 195
BmiI GGNNCC 1 cut(s) 197
BmsI GCATC 1 cut(s) 103
BoxI GACNNNNGTC 1 cut(s) 168
BpuEI CTTGAG 1 cut(s) 203
BsaI GGTCTC 1 cut(s) 91
BsaWI WCCGGW 1 cut(s) 192
Bsc4I CCNNNNNNNGG 1 cut(s) 131
BseAI TCCGGA 1 cut(s) 192
BseGI GGATG 1 cut(s) 79
BseLI CCNNNNNNNGG 1 cut(s) 131
BseMII CTCAG 2 cut(s) 69, 172
BseRI GAGGAG 1 cut(s) 36
BseXI GCAGC 3 cut(s) 233, 284, 312
BsiSI CCGG 2 cut(s) 132, 193
BslI CCNNNNNNNGG 1 cut(s) 131
BsmAI GTCTC 2 cut(s) 91, 156
Bso31I GGTCTC 1 cut(s) 91
Bsp13I TCCGGA 1 cut(s) 192
Bsp143I GATC 2 cut(s) 288, 311
BspACI CCGC 1 cut(s) 20
BspCNI CTCAG 2 cut(s) 68, 171
BspEI TCCGGA 1 cut(s) 192
BspHI TCATGA 1 cut(s) 321
BspLI GGNNCC 1 cut(s) 197
BspMAI CTGCAG 1 cut(s) 302
BspTNI GGTCTC 1 cut(s) 91
BssMI GATC 2 cut(s) 288, 311
Bst4CI ACNGT 1 cut(s) 110
Bst6I CTCTTC 1 cut(s) 89
BstDEI CTNAG 2 cut(s) 55, 158
BstF5I GGATG 1 cut(s) 79
BstKTI GATC 2 cut(s) 291, 314
BstMAI GTCTC 2 cut(s) 91, 156
BstMBI GATC 2 cut(s) 288, 311
BstPAI GACNNNNGTC 1 cut(s) 168
BstSFI CTRYAG 1 cut(s) 298
BstV1I GCAGC 3 cut(s) 233, 284, 312
BtsCI GGATG 1 cut(s) 79
BtsIMutI CAGTG 1 cut(s) 115
CciI TCATGA 1 cut(s) 321
Cfr13I GGNCC 1 cut(s) 195
CviAII CATG 1 cut(s) 322
CviJI RGCY 5 cut(s) 135, 224, 250, 297, 303
CviKI_1 RGCY 5 cut(s) 135, 224, 250, 297, 303
DdeI CTNAG 2 cut(s) 55, 158
DpnI GATC 2 cut(s) 290, 313
DpnII GATC 2 cut(s) 288, 311
Eam1104I CTCTTC 1 cut(s) 89
EarI CTCTTC 1 cut(s) 89
Eco31I GGTCTC 1 cut(s) 91
Eco47I GGWCC 1 cut(s) 195
FaeI CATG 1 cut(s) 325
FaiI YATR 3 cut(s) 265, 293, 323
FatI CATG 1 cut(s) 321
FbaI TGATCA 1 cut(s) 288
Fnu4HI GCNGC 3 cut(s) 222, 298, 301
FokI GGATG 1 cut(s) 66
Fsp4HI GCNGC 3 cut(s) 222, 298, 301
GluI GCNGC 3 cut(s) 222, 298, 301
HapII CCGG 2 cut(s) 132, 193
Hin1II CATG 1 cut(s) 325
HindIII AAGCTT 1 cut(s) 248
HinfI GANTC 1 cut(s) 145
HpaII CCGG 2 cut(s) 132, 193
HphI GGTGA 1 cut(s) 256
Hpy188I TCNGA 4 cut(s) 51, 161, 210, 255
Hpy188III TCNNGA 5 cut(s) 142, 182, 193, 236, 322
HpyCH4III ACNGT 1 cut(s) 110
HpyCH4IV ACGT 1 cut(s) 338
HpyCH4V TGCA 1 cut(s) 300
HpyF3I CTNAG 2 cut(s) 55, 158
HpySE526I ACGT 1 cut(s) 338
Hsp92II CATG 1 cut(s) 325
Kpn2I TCCGGA 1 cut(s) 192
Ksp22I TGATCA 1 cut(s) 288
Kzo9I GATC 2 cut(s) 288, 311
LpnPI CCDG 6 cut(s) 145, 206, 213, 221, 227, 322
Lsp1109I GCAGC 3 cut(s) 233, 284, 312
LweI GCATC 1 cut(s) 103
MaeII ACGT 1 cut(s) 338
MalI GATC 2 cut(s) 290, 313
MboI GATC 2 cut(s) 288, 311
MboII GAAGA 3 cut(s) 17, 68, 106
MluCI AATT 1 cut(s) 231
MnlI CCTC 6 cut(s) 54, 57, 81, 113, 167, 178
MroI TCCGGA 1 cut(s) 192
MspI CCGG 2 cut(s) 132, 193
NdeII GATC 2 cut(s) 288, 311
NlaIII CATG 1 cut(s) 325
NlaIV GGNNCC 1 cut(s) 197
PagI TCATGA 1 cut(s) 321
PfeI GAWTC 1 cut(s) 145
PkrI GCNGC 3 cut(s) 223, 299, 302
PshAI GACNNNNGTC 1 cut(s) 168
PspN4I GGNNCC 1 cut(s) 197
PspPI GGNCC 1 cut(s) 195
PstI CTGCAG 1 cut(s) 302
SatI GCNGC 3 cut(s) 222, 298, 301
Sau3AI GATC 2 cut(s) 288, 311
Sau96I GGNCC 1 cut(s) 195
SetI ASST 5 cut(s) 189, 246, 252, 299, 341
SfaNI GCATC 1 cut(s) 103
SfcI CTRYAG 1 cut(s) 298
SinI GGWCC 1 cut(s) 195
SmlI CTYRAG 1 cut(s) 182
SmoI CTYRAG 1 cut(s) 182
Sse9I AATT 1 cut(s) 231
SsiI CCGC 1 cut(s) 20
TaaI ACNGT 1 cut(s) 110
TaiI ACGT 1 cut(s) 341
TaqI TCGA 2 cut(s) 60, 105
TasI AATT 1 cut(s) 231
TfiI GAWTC 1 cut(s) 145
TscAI CASTG 1 cut(s) 115
TseI GCWGC 3 cut(s) 221, 297, 300
TspDTI ATGAA 2 cut(s) 68, 338
TspRI CASTG 1 cut(s) 115
VpaK11BI GGWCC 1 cut(s) 195
XapI RAATTY 1 cut(s) 231
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.