MD01G1056800.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr01
OG0001501
Physical Location & Seq
Reverse (-)
16179296 .. 16181611
2316 bp
Loading structure...
UTR
Exon/CDS
Intron
MD01G1056800.v1.1.491

Sequence Viewer

Length: 249 bp
ATGACGGCAGAAAAAGTTTCGGCAACAAGAAGTAAGAATGCACCAGCTGAAAAGCCCCAAGATACAAGGGCTTTTGGGAAGCCATCAGAAAGTAAGTTTCCATCAGGTGTAGCCAGTGAGAAGCAGCGGGCTGAAGATGGTCAGACTCAAGGGACATATATTGTTGGTAGGTCTGCTTTTGGCTGGAATTTCATTATATTTGTGGGGGAAGAACCAGTCTACTATGGAATAACAAAGGAGTCATTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

9.0

Weight (kDa)

7.99

Isoelectric Point (pI)

47.95

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

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Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 219
AciI CCGC 1 cut(s) 127
AcsI RAATTY 1 cut(s) 187
AcuI CTGAAG 1 cut(s) 153
AluBI AGCT 1 cut(s) 47
AluI AGCT 1 cut(s) 47
ApeKI GCWGC 1 cut(s) 124
ApoI RAATTY 1 cut(s) 187
BbvI GCAGC 1 cut(s) 136
BccI CCATC 3 cut(s) 91, 109, 131
BceAI ACGGC 1 cut(s) 21
BisI GCNGC 1 cut(s) 125
BlsI GCNGC 1 cut(s) 126
BpuEI CTTGAG 1 cut(s) 132
Bse1I ACTGG 2 cut(s) 114, 215
BseNI ACTGG 2 cut(s) 114, 215
BseXI GCAGC 1 cut(s) 136
BslFI GGGAC 1 cut(s) 166
BsmFI GGGAC 1 cut(s) 166
BsmI GAATGC 1 cut(s) 43
BspACI CCGC 1 cut(s) 127
BsrI ACTGG 2 cut(s) 114, 215
BstC8I GCNNGC 1 cut(s) 129
BstV1I GCAGC 1 cut(s) 136
BtsIMutI CAGTG 1 cut(s) 121
Cac8I GCNNGC 1 cut(s) 129
CviJI RGCY 7 cut(s) 47, 55, 71, 82, 113, 131, 183
CviKI_1 RGCY 7 cut(s) 47, 55, 71, 82, 113, 131, 183
Eco57I CTGAAG 1 cut(s) 153
FaiI YATR 4 cut(s) 157, 159, 197, 225
FaqI GGGAC 1 cut(s) 166
FauI CCCGC 1 cut(s) 120
FblI GTMKAC 1 cut(s) 219
Fnu4HI GCNGC 1 cut(s) 125
Fsp4HI GCNGC 1 cut(s) 125
GluI GCNGC 1 cut(s) 125
HinfI GANTC 2 cut(s) 145, 239
Hpy166II GTNNAC 1 cut(s) 220
Hpy188I TCNGA 2 cut(s) 88, 144
Hpy8I GTNNAC 1 cut(s) 220
HpyCH4V TGCA 1 cut(s) 41
LpnPI CCDG 5 cut(s) 57, 90, 127, 169, 228
Lsp1109I GCAGC 1 cut(s) 136
MboII GAAGA 2 cut(s) 146, 221
MluCI AATT 1 cut(s) 187
MlyI GAGTC 2 cut(s) 139, 248
MspA1I CMGCKG 2 cut(s) 47, 127
Mva1269I GAATGC 1 cut(s) 43
PctI GAATGC 1 cut(s) 43
PkrI GCNGC 1 cut(s) 126
PleI GAGTC 2 cut(s) 139, 247
PpsI GAGTC 2 cut(s) 139, 247
PvuII CAGCTG 1 cut(s) 47
SatI GCNGC 1 cut(s) 125
SchI GAGTC 2 cut(s) 139, 248
SetI ASST 3 cut(s) 49, 109, 173
SmlI CTYRAG 1 cut(s) 147
SmoI CTYRAG 1 cut(s) 147
Sse9I AATT 1 cut(s) 187
SsiI CCGC 1 cut(s) 127
TasI AATT 1 cut(s) 187
TscAI CASTG 1 cut(s) 121
TseI GCWGC 1 cut(s) 124
TspDTI ATGAA 1 cut(s) 181
TspRI CASTG 1 cut(s) 121
XapI RAATTY 1 cut(s) 187
XmiI GTMKAC 1 cut(s) 219
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.