pycom07g13660

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0001501
Physical Location & Seq
Forward (+)
15538374 .. 15540221
1848 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g13660.3

Sequence Viewer

Length: 591 bp
ATGGAAGAAGATCCAAAGCCAGCCGAGTCCACAGCCACCGAAATCCTCCCAATCCCTCCGAGCTCCGCCGAAGTCCTCCCTCCCCAGCCTCCTCCGTCTTCTCTTCCTCCCAAGTCCAAGAAGAGACCTCTTGAAAACGATGCCCATTTCTCCAACTCATCCACCCTCTACAAGATTCGCGCCGTCCTCAAAGAGGTCCGCCCTCATTTTCTCGAGGTTCTCAGGACCCCTGACTTTCGAACGTGCAAGTCATCTGAAGAAATTCAAGAATATGTTAAACTTCTAATGGAACTATGCAAACAGATGACGGCAGAAACAGTTTCGGCAACAAGAAGTAAGAATGTGCCAGGTGAAAAGCCCCAAGATACAAAGGCTTTTGCAAAGCCATCAGAAAATAAGTTTCCAACAGGTGTATCCAGCGAAAAGCAGCGGGCTGAAGATGGTCAGACTCAAGGGACATATATTGTTGGTGGGTCTGCTTTCGGCTGGAATTTCATTACCTTTGTAGGCGAAGAACCAGTCTACTACGGAATAACAAAGGTGTCATTTCGAGCTAATGGCAGCAAAGAAACAGTTCAGACTATGGAATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

197

Amino Acids

21.74

Weight (kDa)

6.22

Isoelectric Point (pI)

51.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 522
AccII CGCG 1 cut(s) 180
AciI CCGC 3 cut(s) 66, 199, 430
AclWI GGATC 1 cut(s) 5
AcsI RAATTY 2 cut(s) 261, 490
AcuI CTGAAG 2 cut(s) 276, 456
AfiI CCNNNNNNNGG 1 cut(s) 193
AgsI TTSAA 2 cut(s) 134, 266
AjnI CCWGG 1 cut(s) 346
AluBI AGCT 2 cut(s) 63, 554
AluI AGCT 2 cut(s) 63, 554
Alw21I GWGCWC 1 cut(s) 65
Alw26I GTCTC 1 cut(s) 118
AlwI GGATC 1 cut(s) 5
Ama87I CYCGRG 1 cut(s) 212
ApeKI GCWGC 2 cut(s) 427, 561
ApoI RAATTY 2 cut(s) 261, 490
ArsI GACNNNNNNTTYG 2 cut(s) 504, 536
Asp700I GAANNNNTTC 2 cut(s) 261, 573
AspLEI GCGC 1 cut(s) 182
AspS9I GGNCC 2 cut(s) 196, 225
AsuHPI GGTGA 1 cut(s) 362
AsuII TTCGAA 1 cut(s) 238
AvaI CYCGRG 1 cut(s) 212
AvaII GGWCC 2 cut(s) 196, 225
BaeI ACNNNNGTAYC 2 cut(s) 396, 429
BanII GRGCYC 1 cut(s) 65
BbsI GAAGAC 1 cut(s) 90
Bbv12I GWGCWC 1 cut(s) 65
BbvI GCAGC 2 cut(s) 439, 573
BccI CCATC 2 cut(s) 394, 434
BceAI ACGGC 2 cut(s) 167, 324
BciT130I CCWGG 1 cut(s) 348
BciVI GTATCC 1 cut(s) 424
BcoDI GTCTC 1 cut(s) 118
BfuI GTATCC 1 cut(s) 424
BisI GCNGC 2 cut(s) 428, 562
BlsI GCNGC 2 cut(s) 429, 563
Bme1390I CCNGG 1 cut(s) 348
Bme18I GGWCC 2 cut(s) 196, 225
BmeT110I CYCGRG 1 cut(s) 212
BmgT120I GGNCC 2 cut(s) 196, 225
BmiI GGNNCC 1 cut(s) 227
BmrFI CCNGG 1 cut(s) 348
BmsI GCATC 1 cut(s) 130
BpiI GAAGAC 1 cut(s) 90
Bpu14I TTCGAA 1 cut(s) 238
BpuEI CTTGAG 1 cut(s) 435
BsaI GGTCTC 1 cut(s) 118
Bsc4I CCNNNNNNNGG 1 cut(s) 193
Bse1I ACTGG 1 cut(s) 518
BseBI CCWGG 1 cut(s) 348
BseGI GGATG 1 cut(s) 158
BseLI CCNNNNNNNGG 1 cut(s) 193
BseMII CTCAG 1 cut(s) 235
BseNI ACTGG 1 cut(s) 518
BseRI GAGGAG 1 cut(s) 81
BseXI GCAGC 2 cut(s) 439, 573
BseYI CCCAGC 1 cut(s) 84
Bsh1236I CGCG 1 cut(s) 180
BsiHKAI GWGCWC 1 cut(s) 65
BsiHKCI CYCGRG 1 cut(s) 212
BslFI GGGAC 1 cut(s) 469
BslI CCNNNNNNNGG 1 cut(s) 193
BsmAI GTCTC 1 cut(s) 118
BsmFI GGGAC 1 cut(s) 469
Bso31I GGTCTC 1 cut(s) 118
BsoBI CYCGRG 1 cut(s) 212
Bsp119I TTCGAA 1 cut(s) 238
Bsp1286I GDGCHC 1 cut(s) 65
Bsp143I GATC 1 cut(s) 10
BspACI CCGC 3 cut(s) 66, 199, 430
BspCNI CTCAG 1 cut(s) 234
BspFNI CGCG 1 cut(s) 180
BspLI GGNNCC 1 cut(s) 227
BspPI GGATC 1 cut(s) 5
BspT104I TTCGAA 1 cut(s) 238
BspTNI GGTCTC 1 cut(s) 118
BsrI ACTGG 1 cut(s) 518
BssMI GATC 1 cut(s) 10
Bst2UI CCWGG 1 cut(s) 348
Bst4CI ACNGT 2 cut(s) 319, 574
Bst6I CTCTTC 2 cut(s) 108, 116
BstBI TTCGAA 1 cut(s) 238
BstC8I GCNNGC 2 cut(s) 21, 432
BstDEI CTNAG 1 cut(s) 221
BstENI CCTNNNNNAGG 1 cut(s) 191
BstF5I GGATG 1 cut(s) 158
BstFNI CGCG 1 cut(s) 180
BstHHI GCGC 1 cut(s) 182
BstKTI GATC 1 cut(s) 13
BstMAI GTCTC 1 cut(s) 118
BstMBI GATC 1 cut(s) 10
BstNI CCWGG 1 cut(s) 348
BstSCI CCNGG 1 cut(s) 346
BstUI CGCG 1 cut(s) 180
BstV1I GCAGC 2 cut(s) 439, 573
BstV2I GAAGAC 1 cut(s) 90
BstX2I RGATCY 1 cut(s) 10
BstYI RGATCY 1 cut(s) 10
BsuI GTATCC 1 cut(s) 424
BtsCI GGATG 1 cut(s) 158
Cac8I GCNNGC 2 cut(s) 21, 432
CfoI GCGC 1 cut(s) 182
Cfr13I GGNCC 2 cut(s) 196, 225
DdeI CTNAG 1 cut(s) 221
DpnI GATC 1 cut(s) 12
DpnII GATC 1 cut(s) 10
Eam1104I CTCTTC 2 cut(s) 108, 116
EarI CTCTTC 2 cut(s) 108, 116
EciI GGCGGA 2 cut(s) 55, 188
Ecl136II GAGCTC 1 cut(s) 63
Eco24I GRGCYC 1 cut(s) 65
Eco31I GGTCTC 1 cut(s) 118
Eco47I GGWCC 2 cut(s) 196, 225
Eco53kI GAGCTC 1 cut(s) 63
Eco57I CTGAAG 2 cut(s) 276, 456
Eco88I CYCGRG 1 cut(s) 212
EcoICRI GAGCTC 1 cut(s) 63
EcoNI CCTNNNNNAGG 1 cut(s) 191
EcoO109I RGGNCCY 1 cut(s) 225
EcoRII CCWGG 1 cut(s) 346
EcoT38I GRGCYC 1 cut(s) 65
FaiI YATR 5 cut(s) 273, 295, 460, 462, 584
FaqI GGGAC 1 cut(s) 469
FauI CCCGC 1 cut(s) 423
FblI GTMKAC 1 cut(s) 522
Fnu4HI GCNGC 2 cut(s) 428, 562
FokI GGATG 1 cut(s) 145
FriOI GRGCYC 1 cut(s) 65
Fsp4HI GCNGC 2 cut(s) 428, 562
GlaI GCGC 1 cut(s) 181
GluI GCNGC 2 cut(s) 428, 562
GsaI CCCAGC 1 cut(s) 88
HhaI GCGC 1 cut(s) 182
Hin6I GCGC 1 cut(s) 180
HinP1I GCGC 1 cut(s) 180
HinfI GANTC 3 cut(s) 26, 175, 448
HphI GGTGA 1 cut(s) 362
Hpy166II GTNNAC 2 cut(s) 30, 523
Hpy188I TCNGA 5 cut(s) 60, 256, 391, 447, 579
Hpy188III TCNNGA 4 cut(s) 131, 212, 223, 266
Hpy8I GTNNAC 2 cut(s) 30, 523
HpyCH4III ACNGT 2 cut(s) 319, 574
HpyCH4IV ACGT 1 cut(s) 242
HpyCH4V TGCA 3 cut(s) 246, 297, 380
HpyF3I CTNAG 1 cut(s) 221
HpySE526I ACGT 1 cut(s) 242
HspAI GCGC 1 cut(s) 180
Kzo9I GATC 1 cut(s) 10
LmnI GCTCC 1 cut(s) 68
Lsp1109I GCAGC 2 cut(s) 439, 573
LweI GCATC 1 cut(s) 130
MaeII ACGT 1 cut(s) 242
MalI GATC 1 cut(s) 12
MboI GATC 1 cut(s) 10
MboII GAAGA 8 cut(s) 17, 20, 90, 95, 133, 269, 449, 524
MflI RGATCY 1 cut(s) 10
MhlI GDGCHC 1 cut(s) 65
MluCI AATT 2 cut(s) 261, 490
MlyI GAGTC 2 cut(s) 35, 442
MmeI TCCRAC 2 cut(s) 177, 428
MroXI GAANNNNTTC 2 cut(s) 261, 573
MseI TTAA 1 cut(s) 276
MspA1I CMGCKG 1 cut(s) 430
MspR9I CCNGG 1 cut(s) 348
MvaI CCWGG 1 cut(s) 348
MvnI CGCG 1 cut(s) 180
NdeII GATC 1 cut(s) 10
NlaIV GGNNCC 1 cut(s) 227
NmeAIII GCCGAG 1 cut(s) 49
NspV TTCGAA 1 cut(s) 238
PaeR7I CTCGAG 1 cut(s) 212
PdmI GAANNNNTTC 2 cut(s) 261, 573
PfeI GAWTC 1 cut(s) 175
PkrI GCNGC 2 cut(s) 429, 563
PleI GAGTC 2 cut(s) 34, 442
PpsI GAGTC 2 cut(s) 34, 442
PpuMI RGGWCCY 1 cut(s) 225
Psp124BI GAGCTC 1 cut(s) 65
Psp5II RGGWCCY 1 cut(s) 225
Psp6I CCWGG 1 cut(s) 346
PspFI CCCAGC 1 cut(s) 84
PspGI CCWGG 1 cut(s) 346
PspN4I GGNNCC 1 cut(s) 227
PspPI GGNCC 2 cut(s) 196, 225
PspPPI RGGWCCY 1 cut(s) 225
PsuI RGATCY 1 cut(s) 10
SacI GAGCTC 1 cut(s) 65
SaqAI TTAA 1 cut(s) 276
SatI GCNGC 2 cut(s) 428, 562
Sau3AI GATC 1 cut(s) 10
Sau96I GGNCC 2 cut(s) 196, 225
SchI GAGTC 2 cut(s) 35, 442
ScrFI CCNGG 1 cut(s) 348
SduI GDGCHC 1 cut(s) 65
SfaNI GCATC 1 cut(s) 130
Sfr274I CTCGAG 1 cut(s) 212
SfuI TTCGAA 1 cut(s) 238
SinI GGWCC 2 cut(s) 196, 225
SlaI CTCGAG 1 cut(s) 212
SmlI CTYRAG 2 cut(s) 212, 450
SmoI CTYRAG 2 cut(s) 212, 450
Sse9I AATT 2 cut(s) 261, 490
SsiI CCGC 3 cut(s) 66, 199, 430
SstI GAGCTC 1 cut(s) 65
StyD4I CCNGG 1 cut(s) 346
TaaI ACNGT 2 cut(s) 319, 574
TaiI ACGT 1 cut(s) 245
TaqI TCGA 3 cut(s) 213, 238, 550
TasI AATT 2 cut(s) 261, 490
TfiI GAWTC 1 cut(s) 175
Tru1I TTAA 1 cut(s) 276
Tru9I TTAA 1 cut(s) 276
TseI GCWGC 2 cut(s) 427, 561
TspDTI ATGAA 1 cut(s) 484
TspGWI ACGGA 2 cut(s) 84, 543
VpaK11BI GGWCC 2 cut(s) 196, 225
XagI CCTNNNNNAGG 1 cut(s) 191
XapI RAATTY 2 cut(s) 261, 490
XhoI CTCGAG 1 cut(s) 212
XmiI GTMKAC 1 cut(s) 522
XmnI GAANNNNTTC 2 cut(s) 261, 573
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.