Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0001501

Physical Location & Seq

Genomic Coordinates Reverse (-)

50073193 .. 50074961

Gene Structure 1769 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG240600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 540 bp

ATGGAAGAACCAACGCCACCGCCACCGACCCAAATCCCAAATCCTCCTCCGAACTCAGTCGAAACTCCCCCTCATCTTCATCCAAAGACCAAGAAGAGACCCCTTGACAGTGATGCCCAAATCCCCAACTCCGGCTACTTCAAGATTCGTGCCGTACTCAGAGACATTCGTCCTAATGTTCTTGAGGTTCTCCGGACCCCTGACTTTCGGAAGTGTAAGGCAGCCAACGAAATTGAAGAACAGGTGAAGCTTCTGATGGAACTATACAAACAGATGACAGCACAAGCACTTTCCGCACCAAGATGTGACAATGTGCCAGAAGGGCAGCTTTCATCTGCTGCGCCATCAGAACATAATCTTCCTTCAGGTATATCTGGTCAGAAGCAGCAGGCTGAAGATGAACAAAATAAAGGGAGTTATGTTGTTGGAGGATCAGCTTTTGGCTGGAACTTCATCACCTTTTCCACCACGGAACCAGTCTATTATGGTATGACAAAGGAGTCATTTCGAGCACAAGCAGCAAAGCTGACAACTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

179

Amino Acids

19.77

Weight (kDa)

6.84

Isoelectric Point (pI)

50.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01730
fragaria_vesca	FvH4_7g14150 FvH4_7g29600
malus_domestica	MD01G1056800.v1.1 MD01G1057500.v1.1 MD01G1202200.v1.1 MD07G1139200.v1.1
prunus_persica	Prupe.2G167900_v2.0.a1 Prupe.2G295600_v2.0.a1 Prupe.2G295600_v2.0.a1
pyrus_communis	pycom01g08560 pycom01g08690 pycom01g08730 pycom01g21180 pycom07g13620 pycom07g13660 pycom07g13690 pycom07g13710 pycom07g13950
rosa_chinensis	RchiOBHm_Chr1g0354801 RchiOBHm_Chr1g0355051 RchiOBHm_Chr1g0377581
rosa_laevigata	RLG00000026515 RLG00000028180
rosa_multiflora	Rmu_sc0002832.1_g000009 Rmu_sc0003115.1_g000028 Rmu_sc0003940.1_g000007 Rmu_sc0012587.1_g000007 Rmu_sc0016725.1_g000003
rosa_roxburghii	Rroxscaffold_4G00281220 Rroxscaffold_4G00300710
rosa_rugosa	Rorug01G0244700 Rorug01G0403600
rosa_samantha	Rh1AG255700 Rh1AG257000 Rh1AG429200 Rh1BG226300 Rh1BG380100 Rh1CG238800 Rh1CG239100 Rh1CG240600 Rh1CG394300 Rh1DG253900 Rh1DG411300
rosa_wichuraiana	Rw0G011190 Rw1G022380 Rw1G022430 Rw1G022580 Rw1G022650 Rw1G022660 Rw1G036960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	499
AccIII	TCCGGA	1 cut(s)	192
AciI	CCGC	2 cut(s)	20, 294
AclWI	GGATC	1 cut(s)	439
AcuI	CTGAAG	2 cut(s)	348, 414
AfaI	GTAC	1 cut(s)	156
AfiI	CCNNNNNNNGG	1 cut(s)	131
AgsI	TTSAA	2 cut(s)	142, 236
AluBI	AGCT	4 cut(s)	250, 328, 437, 526
AluI	AGCT	4 cut(s)	250, 328, 437, 526
Alw21I	GWGCWC	1 cut(s)	514
Alw26I	GTCTC	2 cut(s)	91, 156
AlwI	GGATC	1 cut(s)	439
Aor13HI	TCCGGA	1 cut(s)	192
ApeKI	GCWGC	5 cut(s)	221, 325, 338, 385, 518
AspLEI	GCGC	1 cut(s)	343
AspS9I	GGNCC	1 cut(s)	195
AsuHPI	GGTGA	2 cut(s)	256, 448
AvaII	GGWCC	1 cut(s)	195
Bbv12I	GWGCWC	1 cut(s)	514
BbvI	GCAGC	5 cut(s)	233, 325, 337, 397, 530
BccI	CCATC	2 cut(s)	250, 352
BceAI	ACGGC	1 cut(s)	137
BcoDI	GTCTC	2 cut(s)	91, 156
BglI	GCCNNNNNGGC	1 cut(s)	322
BisI	GCNGC	5 cut(s)	222, 326, 339, 386, 519
BlsI	GCNGC	5 cut(s)	223, 327, 340, 387, 520
Bme18I	GGWCC	1 cut(s)	195
BmgT120I	GGNCC	1 cut(s)	195
BmiI	GGNNCC	2 cut(s)	197, 474
BmsI	GCATC	1 cut(s)	103
BoxI	GACNNNNGTC	1 cut(s)	168
BpuEI	CTTGAG	1 cut(s)	203
BsaI	GGTCTC	1 cut(s)	91
BsaJI	CCNNGG	1 cut(s)	468
BsaWI	WCCGGW	1 cut(s)	192
Bsc4I	CCNNNNNNNGG	1 cut(s)	131
Bse1I	ACTGG	1 cut(s)	476
BseAI	TCCGGA	1 cut(s)	192
BseDI	CCNNGG	1 cut(s)	468
BseGI	GGATG	1 cut(s)	79
BseLI	CCNNNNNNNGG	1 cut(s)	131
BseMII	CTCAG	2 cut(s)	69, 172
BseNI	ACTGG	1 cut(s)	476
BseRI	GAGGAG	1 cut(s)	36
BseXI	GCAGC	5 cut(s)	233, 325, 337, 397, 530
BsiHKAI	GWGCWC	1 cut(s)	514
BsiSI	CCGG	2 cut(s)	132, 193
BslI	CCNNNNNNNGG	1 cut(s)	131
BsmAI	GTCTC	2 cut(s)	91, 156
Bso31I	GGTCTC	1 cut(s)	91
Bsp1286I	GDGCHC	1 cut(s)	514
Bsp13I	TCCGGA	1 cut(s)	192
Bsp143I	GATC	1 cut(s)	431
BspACI	CCGC	2 cut(s)	20, 294
BspCNI	CTCAG	2 cut(s)	68, 171
BspEI	TCCGGA	1 cut(s)	192
BspLI	GGNNCC	2 cut(s)	197, 474
BspPI	GGATC	1 cut(s)	439
BspTNI	GGTCTC	1 cut(s)	91
BsrI	ACTGG	1 cut(s)	476
BssECI	CCNNGG	1 cut(s)	468
BssMI	GATC	1 cut(s)	431
Bst4CI	ACNGT	1 cut(s)	110
Bst6I	CTCTTC	1 cut(s)	89
BstC8I	GCNNGC	1 cut(s)	390
BstDEI	CTNAG	2 cut(s)	55, 158
BstDSI	CCRYGG	1 cut(s)	468
BstF5I	GGATG	1 cut(s)	79
BstHHI	GCGC	1 cut(s)	343
BstKTI	GATC	1 cut(s)	434
BstMAI	GTCTC	2 cut(s)	91, 156
BstMBI	GATC	1 cut(s)	431
BstMWI	GCNNNNNNNGC	3 cut(s)	293, 322, 518
BstPAI	GACNNNNGTC	1 cut(s)	168
BstV1I	GCAGC	5 cut(s)	233, 325, 337, 397, 530
BtgI	CCRYGG	1 cut(s)	468
BtsCI	GGATG	1 cut(s)	79
BtsIMutI	CAGTG	1 cut(s)	115
Cac8I	GCNNGC	1 cut(s)	390
CfoI	GCGC	1 cut(s)	343
Cfr13I	GGNCC	1 cut(s)	195
Csp6I	GTAC	1 cut(s)	155
CviJI	RGCY	8 cut(s)	135, 224, 250, 328, 392, 437, 444, 526
CviKI_1	RGCY	8 cut(s)	135, 224, 250, 328, 392, 437, 444, 526
CviQI	GTAC	1 cut(s)	155
DdeI	CTNAG	2 cut(s)	55, 158
DpnI	GATC	1 cut(s)	433
DpnII	GATC	1 cut(s)	431
DrdI	GACNNNNNNGTC	1 cut(s)	499
DseDI	GACNNNNNNGTC	1 cut(s)	499
Eam1104I	CTCTTC	1 cut(s)	89
EarI	CTCTTC	1 cut(s)	89
Eco31I	GGTCTC	1 cut(s)	91
Eco47I	GGWCC	1 cut(s)	195
Eco57I	CTGAAG	2 cut(s)	348, 414
FaiI	YATR	7 cut(s)	265, 354, 371, 420, 486, 491, 538
FalI	AAGNNNNNCTT	2 cut(s)	312, 344
Fnu4HI	GCNGC	5 cut(s)	222, 326, 339, 386, 519
FokI	GGATG	1 cut(s)	66
Fsp4HI	GCNGC	5 cut(s)	222, 326, 339, 386, 519
GlaI	GCGC	1 cut(s)	342
GluI	GCNGC	5 cut(s)	222, 326, 339, 386, 519
HapII	CCGG	2 cut(s)	132, 193
HhaI	GCGC	1 cut(s)	343
Hin6I	GCGC	1 cut(s)	341
HinP1I	GCGC	1 cut(s)	341
HindIII	AAGCTT	1 cut(s)	248
HinfI	GANTC	2 cut(s)	145, 500
HpaII	CCGG	2 cut(s)	132, 193
HphI	GGTGA	2 cut(s)	256, 448
Hpy188I	TCNGA	6 cut(s)	51, 161, 210, 255, 349, 381
Hpy188III	TCNNGA	3 cut(s)	142, 182, 193
HpyAV	CCTTC	2 cut(s)	314, 372
HpyCH4III	ACNGT	1 cut(s)	110
HpyCH4V	TGCA	1 cut(s)	536
HpyF10VI	GCNNNNNNNGC	3 cut(s)	293, 322, 518
HpyF3I	CTNAG	2 cut(s)	55, 158
HspAI	GCGC	1 cut(s)	341
Kpn2I	TCCGGA	1 cut(s)	192
Kzo9I	GATC	1 cut(s)	431
Lsp1109I	GCAGC	5 cut(s)	233, 325, 337, 397, 530
LweI	GCATC	1 cut(s)	103
MaeIII	GTNAC	1 cut(s)	305
MalI	GATC	1 cut(s)	433
MboI	GATC	1 cut(s)	431
MboII	GAAGA	6 cut(s)	17, 68, 106, 248, 350, 407
MhlI	GDGCHC	1 cut(s)	514
MluCI	AATT	1 cut(s)	231
MlyI	GAGTC	1 cut(s)	509
MmeI	TCCRAC	1 cut(s)	406
MnlI	CCTC	5 cut(s)	54, 57, 81, 178, 422
MroI	TCCGGA	1 cut(s)	192
MslI	CAYNNNNRTG	1 cut(s)	301
MspI	CCGG	2 cut(s)	132, 193
MwoI	GCNNNNNNNGC	3 cut(s)	293, 322, 518
NdeII	GATC	1 cut(s)	431
NlaIV	GGNNCC	2 cut(s)	197, 474
NmuCI	GTSAC	1 cut(s)	305
PfeI	GAWTC	1 cut(s)	145
PkrI	GCNGC	5 cut(s)	223, 327, 340, 387, 520
PleI	GAGTC	1 cut(s)	508
PpsI	GAGTC	1 cut(s)	508
PshAI	GACNNNNGTC	1 cut(s)	168
PspN4I	GGNNCC	2 cut(s)	197, 474
PspPI	GGNCC	1 cut(s)	195
RsaI	GTAC	1 cut(s)	156
RsaNI	GTAC	1 cut(s)	155
RseI	CAYNNNNRTG	1 cut(s)	301
SatI	GCNGC	5 cut(s)	222, 326, 339, 386, 519
Sau3AI	GATC	1 cut(s)	431
Sau96I	GGNCC	1 cut(s)	195
SchI	GAGTC	1 cut(s)	509
SduI	GDGCHC	1 cut(s)	514
SetI	ASST	8 cut(s)	189, 246, 252, 330, 370, 439, 461, 528
SfaNI	GCATC	1 cut(s)	103
SinI	GGWCC	1 cut(s)	195
SmiMI	CAYNNNNRTG	1 cut(s)	301
SmlI	CTYRAG	1 cut(s)	182
SmoI	CTYRAG	1 cut(s)	182
Sse9I	AATT	1 cut(s)	231
SsiI	CCGC	2 cut(s)	20, 294
TaaI	ACNGT	1 cut(s)	110
TaqI	TCGA	2 cut(s)	60, 508
TasI	AATT	1 cut(s)	231
TfiI	GAWTC	1 cut(s)	145
TscAI	CASTG	1 cut(s)	115
TseFI	GTSAC	1 cut(s)	305
TseI	GCWGC	5 cut(s)	221, 325, 338, 385, 518
Tsp45I	GTSAC	1 cut(s)	305
TspDTI	ATGAA	4 cut(s)	68, 321, 414, 442
TspGWI	ACGGA	1 cut(s)	485
TspRI	CASTG	1 cut(s)	115
VpaK11BI	GGWCC	1 cut(s)	195

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.