Rh1BG226300

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
OG0001501
Physical Location & Seq
Reverse (-)
34645285 .. 34647784
2500 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG226300.1

Sequence Viewer

Length: 552 bp
ATGGAAGAACCAACGCCACCGCCACCGCCACCGCCACCGACCCAAATCCCAAATCCTCCTCCGAACTCAGTCGAAACTCCCCCTCATCTTCATCCAAAGACCAAGAAGAGACCCCTCGACAGTGATGCCCAAATCCCCAACTCCGGCTACTTCAAGATTCGTGCCGTCCTCAGAGACATTCGTCCTAATGTTCTTGAGGTTCTCCGGACCCCTGACTTTCAGAAGTGTAAGGCAGCCAACGAAATTCAAGAACAGGTGAAGCTTCTGATGGAACTATACAAACAGATGACAGCACAAGCACTTTCCGCACCAAGATGTGACAATGTGCCAGAAGGGCAGCTTTCTTCTGGTGCGCCATCAGAACATAATCTTCCTTCAGGTATATCTGGTCAGAAGCAGCAGGCTGAAGATGAACCAAATAAAGGGACTTATGTTGTTGGAGGGTCAGCCTTTGGCTGGAACTTCATCACCTTTTCCACCACGGAACCGGTCTATTATGGTATGACAAAGGAGTCATTTCGAGCACAAGCAGCAAAGCTGACAACTGCATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

183

Amino Acids

20.1

Weight (kDa)

6.83

Isoelectric Point (pI)

49.57

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 511
AccIII TCCGGA 1 cut(s) 204
AciI CCGC 4 cut(s) 20, 26, 32, 306
AcsI RAATTY 1 cut(s) 243
AcuI CTGAAG 2 cut(s) 360, 426
AfiI CCNNNNNNNGG 3 cut(s) 143, 422, 456
AgeI ACCGGT 1 cut(s) 487
AgsI TTSAA 2 cut(s) 154, 248
AluBI AGCT 3 cut(s) 262, 340, 538
AluI AGCT 3 cut(s) 262, 340, 538
Alw21I GWGCWC 1 cut(s) 526
Alw26I GTCTC 2 cut(s) 103, 168
Aor13HI TCCGGA 1 cut(s) 204
ApeKI GCWGC 4 cut(s) 233, 337, 397, 530
ApoI RAATTY 1 cut(s) 243
AsiGI ACCGGT 1 cut(s) 487
AspLEI GCGC 1 cut(s) 355
AspS9I GGNCC 1 cut(s) 207
AsuHPI GGTGA 2 cut(s) 268, 460
AvaII GGWCC 1 cut(s) 207
Bbv12I GWGCWC 1 cut(s) 526
BbvI GCAGC 4 cut(s) 245, 349, 409, 542
BccI CCATC 2 cut(s) 262, 364
BceAI ACGGC 1 cut(s) 149
BcgI CGANNNNNNTGC 2 cut(s) 107, 141
BcoDI GTCTC 2 cut(s) 103, 168
BglI GCCNNNNNGGC 1 cut(s) 334
BisI GCNGC 4 cut(s) 234, 338, 398, 531
BlsI GCNGC 4 cut(s) 235, 339, 399, 532
Bme18I GGWCC 1 cut(s) 207
BmgT120I GGNCC 1 cut(s) 207
BmiI GGNNCC 2 cut(s) 209, 486
BmsI GCATC 1 cut(s) 115
BoxI GACNNNNGTC 1 cut(s) 180
BpuEI CTTGAG 1 cut(s) 215
BsaI GGTCTC 1 cut(s) 103
BsaJI CCNNGG 1 cut(s) 480
BsaWI WCCGGW 2 cut(s) 204, 487
Bsc4I CCNNNNNNNGG 3 cut(s) 143, 422, 456
Bse118I RCCGGY 1 cut(s) 487
BseAI TCCGGA 1 cut(s) 204
BseDI CCNNGG 1 cut(s) 480
BseGI GGATG 1 cut(s) 91
BseLI CCNNNNNNNGG 3 cut(s) 143, 422, 456
BseMII CTCAG 2 cut(s) 81, 184
BseRI GAGGAG 1 cut(s) 48
BseXI GCAGC 4 cut(s) 245, 349, 409, 542
BshTI ACCGGT 1 cut(s) 487
BsiHKAI GWGCWC 1 cut(s) 526
BsiSI CCGG 3 cut(s) 144, 205, 488
BslFI GGGAC 1 cut(s) 439
BslI CCNNNNNNNGG 3 cut(s) 143, 422, 456
BsmAI GTCTC 2 cut(s) 103, 168
BsmFI GGGAC 1 cut(s) 439
Bso31I GGTCTC 1 cut(s) 103
Bsp1286I GDGCHC 1 cut(s) 526
Bsp13I TCCGGA 1 cut(s) 204
BspACI CCGC 4 cut(s) 20, 26, 32, 306
BspCNI CTCAG 2 cut(s) 80, 183
BspEI TCCGGA 1 cut(s) 204
BspLI GGNNCC 2 cut(s) 209, 486
BspTNI GGTCTC 1 cut(s) 103
BsrFI RCCGGY 1 cut(s) 487
BssAI RCCGGY 1 cut(s) 487
BssECI CCNNGG 1 cut(s) 480
Bst4CI ACNGT 1 cut(s) 122
Bst6I CTCTTC 1 cut(s) 101
BstC8I GCNNGC 1 cut(s) 402
BstDEI CTNAG 2 cut(s) 67, 170
BstDSI CCRYGG 1 cut(s) 480
BstF5I GGATG 1 cut(s) 91
BstHHI GCGC 1 cut(s) 355
BstMAI GTCTC 2 cut(s) 103, 168
BstMWI GCNNNNNNNGC 3 cut(s) 305, 334, 530
BstPAI GACNNNNGTC 1 cut(s) 180
BstV1I GCAGC 4 cut(s) 245, 349, 409, 542
BtgI CCRYGG 1 cut(s) 480
BtsCI GGATG 1 cut(s) 91
BtsIMutI CAGTG 1 cut(s) 127
Cac8I GCNNGC 1 cut(s) 402
CfoI GCGC 1 cut(s) 355
Cfr10I RCCGGY 1 cut(s) 487
Cfr13I GGNCC 1 cut(s) 207
CspAI ACCGGT 1 cut(s) 487
CviJI RGCY 8 cut(s) 147, 236, 262, 340, 404, 449, 456, 538
CviKI_1 RGCY 8 cut(s) 147, 236, 262, 340, 404, 449, 456, 538
DdeI CTNAG 2 cut(s) 67, 170
DrdI GACNNNNNNGTC 1 cut(s) 511
DseDI GACNNNNNNGTC 1 cut(s) 511
Eam1104I CTCTTC 1 cut(s) 101
EarI CTCTTC 1 cut(s) 101
Eco31I GGTCTC 1 cut(s) 103
Eco47I GGWCC 1 cut(s) 207
Eco57I CTGAAG 2 cut(s) 360, 426
FaiI YATR 7 cut(s) 277, 366, 383, 432, 498, 503, 550
FalI AAGNNNNNCTT 2 cut(s) 324, 356
FaqI GGGAC 1 cut(s) 439
Fnu4HI GCNGC 4 cut(s) 234, 338, 398, 531
FokI GGATG 1 cut(s) 78
Fsp4HI GCNGC 4 cut(s) 234, 338, 398, 531
GlaI GCGC 1 cut(s) 354
GluI GCNGC 4 cut(s) 234, 338, 398, 531
HapII CCGG 3 cut(s) 144, 205, 488
HhaI GCGC 1 cut(s) 355
Hin6I GCGC 1 cut(s) 353
HinP1I GCGC 1 cut(s) 353
HindIII AAGCTT 1 cut(s) 260
HinfI GANTC 2 cut(s) 157, 512
HpaII CCGG 3 cut(s) 144, 205, 488
HphI GGTGA 2 cut(s) 268, 460
Hpy188I TCNGA 6 cut(s) 63, 173, 222, 267, 361, 393
Hpy188III TCNNGA 4 cut(s) 154, 194, 205, 248
HpyAV CCTTC 2 cut(s) 326, 384
HpyCH4III ACNGT 1 cut(s) 122
HpyCH4V TGCA 1 cut(s) 548
HpyF10VI GCNNNNNNNGC 3 cut(s) 305, 334, 530
HpyF3I CTNAG 2 cut(s) 67, 170
HspAI GCGC 1 cut(s) 353
Kpn2I TCCGGA 1 cut(s) 204
Lsp1109I GCAGC 4 cut(s) 245, 349, 409, 542
LweI GCATC 1 cut(s) 115
MaeIII GTNAC 1 cut(s) 317
MboII GAAGA 6 cut(s) 17, 80, 118, 336, 362, 419
MhlI GDGCHC 1 cut(s) 526
MluCI AATT 1 cut(s) 243
MlyI GAGTC 1 cut(s) 521
MmeI TCCRAC 1 cut(s) 418
MnlI CCTC 7 cut(s) 66, 69, 93, 125, 179, 190, 434
MroI TCCGGA 1 cut(s) 204
MslI CAYNNNNRTG 1 cut(s) 313
MspI CCGG 3 cut(s) 144, 205, 488
MwoI GCNNNNNNNGC 3 cut(s) 305, 334, 530
NlaIV GGNNCC 2 cut(s) 209, 486
NmuCI GTSAC 1 cut(s) 317
PfeI GAWTC 1 cut(s) 157
PinAI ACCGGT 1 cut(s) 487
PkrI GCNGC 4 cut(s) 235, 339, 399, 532
PleI GAGTC 1 cut(s) 520
PpsI GAGTC 1 cut(s) 520
PshAI GACNNNNGTC 1 cut(s) 180
PspN4I GGNNCC 2 cut(s) 209, 486
PspPI GGNCC 1 cut(s) 207
RseI CAYNNNNRTG 1 cut(s) 313
SatI GCNGC 4 cut(s) 234, 338, 398, 531
Sau96I GGNCC 1 cut(s) 207
SchI GAGTC 1 cut(s) 521
SduI GDGCHC 1 cut(s) 526
SetI ASST 7 cut(s) 201, 258, 264, 342, 382, 473, 540
SfaNI GCATC 1 cut(s) 115
SinI GGWCC 1 cut(s) 207
SmiMI CAYNNNNRTG 1 cut(s) 313
SmlI CTYRAG 1 cut(s) 194
SmoI CTYRAG 1 cut(s) 194
Sse9I AATT 1 cut(s) 243
SsiI CCGC 4 cut(s) 20, 26, 32, 306
TaaI ACNGT 1 cut(s) 122
TaqI TCGA 3 cut(s) 72, 117, 520
TasI AATT 1 cut(s) 243
TfiI GAWTC 1 cut(s) 157
TscAI CASTG 1 cut(s) 127
TseFI GTSAC 1 cut(s) 317
TseI GCWGC 4 cut(s) 233, 337, 397, 530
Tsp45I GTSAC 1 cut(s) 317
TspDTI ATGAA 3 cut(s) 80, 426, 454
TspGWI ACGGA 1 cut(s) 497
TspRI CASTG 1 cut(s) 127
VpaK11BI GGWCC 1 cut(s) 207
XapI RAATTY 1 cut(s) 243
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.