Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0001501

Physical Location & Seq

Genomic Coordinates Reverse (-)

9634505 .. 9635040

Gene Structure 536 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g08690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 495 bp

ATGGTAATAGAGCCTGCTAGGAATAGAAGGCCGATTTCAGAAAAAAAAAAAAAAAAAAAAAAAAAAGAAAGACACGTCGACCTAGAAACCCCAGTCCACATTAGACGTGAGTTCGAACAGTCAGTTGAAGGTGAACCGATGCACAACCATATACACTGGTCAATCCTCGAACCAACGAGCGAAGGGGATGACAAAGAAGAGATGGTCCAAGGAGTATACCATGTTGCAGTTGAAGAGGTCGATGAGGAGGAAGTCTCTGAAAAAGACATCAAAGAAGCTCCGCCACAACTCAAGGACAGAGGGCAGGTAACTATTGATGACTTGAATGAACTATACTTGGGCACAAGCAAAGATGGTCAGACTCAAGGGACATATATTATTGGTGGGTCTGCTTTCAGGTTGAATTTCATTACCTTTGTAGGTGAAGTACCAGTCTACTATGGAATAACAGAGGAGTCATTTCGAGCTAATGGCAGCAAAGAAACAGTTCTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

165

Amino Acids

18.79

Weight (kDa)

5.14

Isoelectric Point (pI)

56.65

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01730
fragaria_vesca	FvH4_7g14150 FvH4_7g29600
malus_domestica	MD01G1056800.v1.1 MD01G1057500.v1.1 MD01G1202200.v1.1 MD07G1139200.v1.1
prunus_persica	Prupe.2G167900_v2.0.a1 Prupe.2G295600_v2.0.a1 Prupe.2G295600_v2.0.a1
pyrus_communis	pycom01g08560 pycom01g08690 pycom01g08730 pycom01g21180 pycom07g13620 pycom07g13660 pycom07g13690 pycom07g13710 pycom07g13950
rosa_chinensis	RchiOBHm_Chr1g0354801 RchiOBHm_Chr1g0355051 RchiOBHm_Chr1g0377581
rosa_laevigata	RLG00000026515 RLG00000028180
rosa_multiflora	Rmu_sc0002832.1_g000009 Rmu_sc0003115.1_g000028 Rmu_sc0003940.1_g000007 Rmu_sc0012587.1_g000007 Rmu_sc0016725.1_g000003
rosa_roxburghii	Rroxscaffold_4G00281220 Rroxscaffold_4G00300710
rosa_rugosa	Rorug01G0244700 Rorug01G0403600
rosa_samantha	Rh1AG255700 Rh1AG257000 Rh1AG429200 Rh1BG226300 Rh1BG380100 Rh1CG238800 Rh1CG239100 Rh1CG240600 Rh1CG394300 Rh1DG253900 Rh1DG411300
rosa_wichuraiana	Rw0G011190 Rw1G022380 Rw1G022430 Rw1G022580 Rw1G022650 Rw1G022660 Rw1G036960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	295
AccI	GTMKAC	3 cut(s)	78, 216, 435
AciI	CCGC	1 cut(s)	281
AcsI	RAATTY	1 cut(s)	403
AfaI	GTAC	1 cut(s)	429
AflIII	ACRYGT	1 cut(s)	73
AgsI	TTSAA	4 cut(s)	128, 233, 325, 403
AjiI	CACGTC	2 cut(s)	76, 107
AluBI	AGCT	2 cut(s)	278, 467
AluI	AGCT	2 cut(s)	278, 467
Alw26I	GTCTC	1 cut(s)	259
AoxI	GGCC	1 cut(s)	29
ApeKI	GCWGC	1 cut(s)	474
ApoI	RAATTY	1 cut(s)	403
Asp700I	GAANNNNTTC	1 cut(s)	486
AspS9I	GGNCC	1 cut(s)	205
AsuHPI	GGTGA	2 cut(s)	143, 434
AsuII	TTCGAA	1 cut(s)	114
AvaII	GGWCC	1 cut(s)	205
BaeGI	GKGCMC	1 cut(s)	344
BbvI	GCAGC	1 cut(s)	486
BccI	CCATC	2 cut(s)	196, 347
BcoDI	GTCTC	1 cut(s)	259
BfaI	CTAG	2 cut(s)	18, 83
BfuAI	ACCTGC	1 cut(s)	295
BisI	GCNGC	1 cut(s)	475
BlsI	GCNGC	1 cut(s)	476
Bme18I	GGWCC	1 cut(s)	205
BmgBI	CACGTC	2 cut(s)	76, 107
BmgT120I	GGNCC	1 cut(s)	205
BmrI	ACTGGG	1 cut(s)	86
BmsI	GCATC	1 cut(s)	129
BmuI	ACTGGG	1 cut(s)	86
BplI	GAGNNNNNCTC	2 cut(s)	239, 271
Bpu14I	TTCGAA	1 cut(s)	114
BpuEI	CTTGAG	2 cut(s)	275, 348
BsaJI	CCNNGG	1 cut(s)	208
Bse1I	ACTGG	3 cut(s)	92, 161, 431
BseDI	CCNNGG	1 cut(s)	208
BseGI	GGATG	1 cut(s)	193
BseNI	ACTGG	3 cut(s)	92, 161, 431
BseRI	GAGGAG	2 cut(s)	260, 467
BseSI	GKGCMC	1 cut(s)	344
BseXI	GCAGC	1 cut(s)	486
BshFI	GGCC	1 cut(s)	31
BslFI	GGGAC	1 cut(s)	382
BsmAI	GTCTC	1 cut(s)	259
BsmFI	GGGAC	1 cut(s)	382
BsnI	GGCC	1 cut(s)	31
Bsp119I	TTCGAA	1 cut(s)	114
Bsp1286I	GDGCHC	1 cut(s)	344
BspACI	CCGC	1 cut(s)	281
BspANI	GGCC	1 cut(s)	31
BspMI	ACCTGC	1 cut(s)	295
BspT104I	TTCGAA	1 cut(s)	114
BsrI	ACTGG	3 cut(s)	92, 161, 431
BssECI	CCNNGG	1 cut(s)	208
BssNAI	GTATAC	1 cut(s)	217
BssT1I	CCWWGG	1 cut(s)	208
Bst1107I	GTATAC	1 cut(s)	217
Bst4CI	ACNGT	2 cut(s)	120, 487
Bst6I	CTCTTC	2 cut(s)	192, 228
BstBI	TTCGAA	1 cut(s)	114
BstC8I	GCNNGC	1 cut(s)	15
BstF5I	GGATG	1 cut(s)	193
BstMAI	GTCTC	1 cut(s)	259
BstSLI	GKGCMC	1 cut(s)	344
BstV1I	GCAGC	1 cut(s)	486
BstZ17I	GTATAC	1 cut(s)	217
BsuRI	GGCC	1 cut(s)	31
BtrI	CACGTC	2 cut(s)	76, 107
BtsCI	GGATG	1 cut(s)	193
BtsIMutI	CAGTG	1 cut(s)	154
BveI	ACCTGC	1 cut(s)	295
Cac8I	GCNNGC	1 cut(s)	15
Cfr13I	GGNCC	1 cut(s)	205
Csp6I	GTAC	1 cut(s)	428
CviAII	CATG	1 cut(s)	221
CviJI	RGCY	4 cut(s)	13, 31, 278, 467
CviKI_1	RGCY	4 cut(s)	13, 31, 278, 467
CviQI	GTAC	1 cut(s)	428
Eam1104I	CTCTTC	2 cut(s)	192, 228
EarI	CTCTTC	2 cut(s)	192, 228
EciI	GGCGGA	1 cut(s)	270
Eco130I	CCWWGG	1 cut(s)	208
Eco47I	GGWCC	1 cut(s)	205
EcoT14I	CCWWGG	1 cut(s)	208
ErhI	CCWWGG	1 cut(s)	208
FaeI	CATG	1 cut(s)	224
FaiI	YATR	8 cut(s)	150, 152, 217, 222, 334, 373, 375, 441
FaqI	GGGAC	1 cut(s)	382
FatI	CATG	1 cut(s)	220
FblI	GTMKAC	3 cut(s)	78, 216, 435
Fnu4HI	GCNGC	1 cut(s)	475
FokI	GGATG	1 cut(s)	200
Fsp4HI	GCNGC	1 cut(s)	475
FspBI	CTAG	2 cut(s)	18, 83
GluI	GCNGC	1 cut(s)	475
HaeIII	GGCC	1 cut(s)	31
Hin1II	CATG	1 cut(s)	224
HincII	GTYRAC	1 cut(s)	79
HindII	GTYRAC	1 cut(s)	79
HinfI	GANTC	2 cut(s)	361, 455
HphI	GGTGA	2 cut(s)	143, 434
Hpy166II	GTNNAC	5 cut(s)	79, 97, 134, 217, 436
Hpy188I	TCNGA	3 cut(s)	40, 259, 360
Hpy8I	GTNNAC	5 cut(s)	79, 97, 134, 217, 436
Hpy99I	CGWCG	1 cut(s)	80
HpyAV	CCTTC	3 cut(s)	21, 122, 176
HpyCH4III	ACNGT	2 cut(s)	120, 487
HpyCH4IV	ACGT	2 cut(s)	75, 106
HpyCH4V	TGCA	2 cut(s)	142, 227
HpySE526I	ACGT	2 cut(s)	75, 106
Hsp92II	CATG	1 cut(s)	224
LmnI	GCTCC	1 cut(s)	283
LpnPI	CCDG	6 cut(s)	27, 105, 142, 290, 382, 444
Lsp1109I	GCAGC	1 cut(s)	486
LweI	GCATC	1 cut(s)	129
MaeI	CTAG	2 cut(s)	18, 83
MaeII	ACGT	2 cut(s)	75, 106
MaeIII	GTNAC	1 cut(s)	307
MboII	GAAGA	2 cut(s)	209, 245
MhlI	GDGCHC	1 cut(s)	344
MluCI	AATT	1 cut(s)	403
MlyI	GAGTC	2 cut(s)	355, 464
MnlI	CCTC	6 cut(s)	176, 229, 238, 241, 293, 445
MroXI	GAANNNNTTC	1 cut(s)	486
NlaIII	CATG	1 cut(s)	224
NspV	TTCGAA	1 cut(s)	114
PdmI	GAANNNNTTC	1 cut(s)	486
PkrI	GCNGC	1 cut(s)	476
PleI	GAGTC	2 cut(s)	355, 463
PpsI	GAGTC	2 cut(s)	355, 463
PspPI	GGNCC	1 cut(s)	205
RsaI	GTAC	1 cut(s)	429
RsaNI	GTAC	1 cut(s)	428
SalI	GTCGAC	1 cut(s)	77
SatI	GCNGC	1 cut(s)	475
Sau96I	GGNCC	1 cut(s)	205
SchI	GAGTC	2 cut(s)	355, 464
SduI	GDGCHC	1 cut(s)	344
SfaNI	GCATC	1 cut(s)	129
SfuI	TTCGAA	1 cut(s)	114
SinI	GGWCC	1 cut(s)	205
SmlI	CTYRAG	2 cut(s)	290, 363
SmoI	CTYRAG	2 cut(s)	290, 363
Sse9I	AATT	1 cut(s)	403
SsiI	CCGC	1 cut(s)	281
SspMI	CTAG	2 cut(s)	18, 83
StyI	CCWWGG	1 cut(s)	208
TaaI	ACNGT	2 cut(s)	120, 487
TaiI	ACGT	2 cut(s)	78, 109
TaqI	TCGA	5 cut(s)	78, 114, 168, 240, 463
TasI	AATT	1 cut(s)	403
TscAI	CASTG	1 cut(s)	161
TseI	GCWGC	1 cut(s)	474
TspDTI	ATGAA	2 cut(s)	342, 397
TspRI	CASTG	1 cut(s)	161
VpaK11BI	GGWCC	1 cut(s)	205
XapI	RAATTY	1 cut(s)	403
XmiI	GTMKAC	3 cut(s)	78, 216, 435
XmnI	GAANNNNTTC	1 cut(s)	486
XspI	CTAG	2 cut(s)	18, 83

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.