Rmu_sc0012587.1_g000007

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0012587.1
OG0001501
Physical Location & Seq
Reverse (-)
25651 .. 27387
1737 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0012587.1_g000007.1.cds

Sequence Viewer

Length: 708 bp
atggaagacccaaaatcaaaacgtgttgagagcagaaagccacacatgacaacaacaacgccacctccacatggagcaagcccaccccaaaaacccacttgtcttcctcgccaaaaccagacccagaagcagaccgacgtcaagaagcgaaagctttccaacaccaacacggagaaagactccccctacttcaaaatccgcgctctccttcaacaactccgtcctcattttattgaggttcttcaaacacctgattttcggaactgtaaagcagctgatgagattcaaaaacaggtgaagcttctcatggctctaaacaaacaaatgaccatggatactggaacacagaagaagtttgcatcagaacatcaacagcattcgtcccatgccaggctgccggagaaagaaaacaaagatggattaccaacacagcaggttcaacctagatgctctgttgaaaaacaactgcctagtgcaaaatggactcattacatcccagataagaaatcatttgtcagcagccagctaccgggaagctacattgtgggtggttcggcttttggttggaacttcatcacattttcaggcaggaaaccagtctattatggtgtaacaaaggaggcatatcgaagcagccacataagatcaggagatgcttctatgctttcaacagatggttcttctggacaagggagaccatctatgtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

235

Amino Acids

26.52

Weight (kDa)

9.9

Isoelectric Point (pI)

50.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 141
Acc36I ACCTGC 1 cut(s) 424
AccII CGCG 1 cut(s) 201
AciI CCGC 1 cut(s) 199
AcyI GRCGYC 1 cut(s) 138
AfiI CCNNNNNNNGG 3 cut(s) 71, 390, 529
AflIII ACRYGT 1 cut(s) 22
AgsI TTSAA 7 cut(s) 193, 212, 245, 287, 440, 458, 669
AjnI CCWGG 1 cut(s) 389
AluBI AGCT 5 cut(s) 154, 275, 301, 526, 537
AluI AGCT 5 cut(s) 154, 275, 301, 526, 537
Alw26I GTCTC 1 cut(s) 688
ApeKI GCWGC 4 cut(s) 272, 394, 519, 633
Asp700I GAANNNNTTC 1 cut(s) 154
AspLEI GCGC 1 cut(s) 203
AsuC2I CCSGG 1 cut(s) 531
AsuHPI GGTGA 1 cut(s) 307
BbsI GAAGAC 2 cut(s) 12, 95
BbvI GCAGC 4 cut(s) 284, 381, 531, 645
BccI CCATC 3 cut(s) 410, 668, 706
BciT130I CCWGG 1 cut(s) 391
BciVI GTATCC 1 cut(s) 328
BcnI CCSGG 1 cut(s) 531
BcoDI GTCTC 1 cut(s) 688
BfaI CTAG 2 cut(s) 444, 471
BfuAI ACCTGC 1 cut(s) 424
BfuI GTATCC 1 cut(s) 328
BisI GCNGC 4 cut(s) 273, 395, 520, 634
BlsI GCNGC 4 cut(s) 274, 396, 521, 635
Bme1390I CCNGG 2 cut(s) 391, 531
BmrFI CCNGG 2 cut(s) 391, 531
BmsI GCATC 3 cut(s) 368, 437, 643
BoxI GACNNNNGTC 1 cut(s) 137
BpiI GAAGAC 2 cut(s) 12, 95
BplI GAGNNNNNCTC 2 cut(s) 164, 196
BpuMI CCSGG 1 cut(s) 531
BsaHI GRCGYC 1 cut(s) 138
BsaI GGTCTC 1 cut(s) 688
BsaJI CCNNGG 1 cut(s) 330
BsaXI ACNNNNNCTCC 2 cut(s) 49, 79
Bsc4I CCNNNNNNNGG 3 cut(s) 71, 390, 529
Bse1I ACTGG 2 cut(s) 343, 596
BseBI CCWGG 1 cut(s) 391
BseDI CCNNGG 1 cut(s) 330
BseGI GGATG 1 cut(s) 492
BseLI CCNNNNNNNGG 3 cut(s) 71, 390, 529
BseNI ACTGG 2 cut(s) 343, 596
BseXI GCAGC 4 cut(s) 284, 381, 531, 645
Bsh1236I CGCG 1 cut(s) 201
BsiSI CCGG 2 cut(s) 398, 530
BslFI GGGAC 1 cut(s) 367
BslI CCNNNNNNNGG 3 cut(s) 71, 390, 529
BsmAI GTCTC 1 cut(s) 688
BsmFI GGGAC 1 cut(s) 367
BsmI GAATGC 1 cut(s) 376
Bso31I GGTCTC 1 cut(s) 688
Bsp143I GATC 1 cut(s) 644
Bsp19I CCATGG 1 cut(s) 330
BspACI CCGC 1 cut(s) 199
BspFNI CGCG 1 cut(s) 201
BspMI ACCTGC 1 cut(s) 424
BspTNI GGTCTC 1 cut(s) 688
BsrI ACTGG 2 cut(s) 343, 596
BssECI CCNNGG 1 cut(s) 330
BssMI GATC 1 cut(s) 644
BssNI GRCGYC 1 cut(s) 138
BssT1I CCWWGG 1 cut(s) 330
Bst2UI CCWGG 1 cut(s) 391
Bst4CI ACNGT 1 cut(s) 266
BstACI GRCGYC 1 cut(s) 138
BstC8I GCNNGC 2 cut(s) 79, 524
BstDSI CCRYGG 1 cut(s) 330
BstF5I GGATG 1 cut(s) 492
BstFNI CGCG 1 cut(s) 201
BstHHI GCGC 1 cut(s) 203
BstKTI GATC 1 cut(s) 647
BstMAI GTCTC 1 cut(s) 688
BstMBI GATC 1 cut(s) 644
BstNI CCWGG 1 cut(s) 391
BstPAI GACNNNNGTC 1 cut(s) 137
BstSCI CCNGG 2 cut(s) 389, 529
BstUI CGCG 1 cut(s) 201
BstV1I GCAGC 4 cut(s) 284, 381, 531, 645
BstV2I GAAGAC 2 cut(s) 12, 95
BsuI GTATCC 1 cut(s) 328
BtgI CCRYGG 1 cut(s) 330
BtsCI GGATG 1 cut(s) 492
BveI ACCTGC 1 cut(s) 424
Cac8I GCNNGC 2 cut(s) 79, 524
CfoI GCGC 1 cut(s) 203
CviAII CATG 5 cut(s) 46, 71, 307, 331, 386
DpnI GATC 1 cut(s) 646
DpnII GATC 1 cut(s) 644
Eco130I CCWWGG 1 cut(s) 330
Eco31I GGTCTC 1 cut(s) 688
EcoRII CCWGG 1 cut(s) 389
EcoT14I CCWWGG 1 cut(s) 330
ErhI CCWWGG 1 cut(s) 330
FaeI CATG 5 cut(s) 49, 74, 310, 334, 389
FaqI GGGAC 1 cut(s) 367
FatI CATG 5 cut(s) 45, 70, 306, 330, 385
Fnu4HI GCNGC 4 cut(s) 273, 395, 520, 634
FokI GGATG 1 cut(s) 479
Fsp4HI GCNGC 4 cut(s) 273, 395, 520, 634
FspBI CTAG 2 cut(s) 444, 471
GlaI GCGC 1 cut(s) 202
GluI GCNGC 4 cut(s) 273, 395, 520, 634
HapII CCGG 2 cut(s) 398, 530
HhaI GCGC 1 cut(s) 203
Hin1I GRCGYC 1 cut(s) 138
Hin1II CATG 5 cut(s) 49, 74, 310, 334, 389
Hin6I GCGC 1 cut(s) 201
HinP1I GCGC 1 cut(s) 201
HindIII AAGCTT 2 cut(s) 152, 299
HinfI GANTC 3 cut(s) 179, 283, 484
HpaII CCGG 2 cut(s) 398, 530
HphI GGTGA 1 cut(s) 307
Hpy188I TCNGA 2 cut(s) 261, 364
Hpy188III TCNNGA 3 cut(s) 142, 648, 684
Hpy99I CGWCG 1 cut(s) 140
HpyAV CCTTC 1 cut(s) 218
HpyCH4III ACNGT 1 cut(s) 266
HpyCH4IV ACGT 2 cut(s) 22, 138
HpyCH4V TGCA 2 cut(s) 359, 476
HpySE526I ACGT 2 cut(s) 22, 138
Hsp92I GRCGYC 1 cut(s) 138
Hsp92II CATG 5 cut(s) 49, 74, 310, 334, 389
HspAI GCGC 1 cut(s) 201
Kzo9I GATC 1 cut(s) 644
LmnI GCTCC 1 cut(s) 74
Lsp1109I GCAGC 4 cut(s) 284, 381, 531, 645
LweI GCATC 3 cut(s) 368, 437, 643
MaeI CTAG 2 cut(s) 444, 471
MaeII ACGT 2 cut(s) 22, 138
MaeIII GTNAC 1 cut(s) 610
MalI GATC 1 cut(s) 646
MboI GATC 1 cut(s) 644
MboII GAAGA 5 cut(s) 17, 95, 233, 361, 672
MlyI GAGTC 2 cut(s) 173, 478
MmeI TCCRAC 2 cut(s) 183, 545
MnlI CCTC 5 cut(s) 75, 117, 229, 234, 613
MroXI GAANNNNTTC 1 cut(s) 154
MspA1I CMGCKG 1 cut(s) 275
MspI CCGG 2 cut(s) 398, 530
MspR9I CCNGG 2 cut(s) 391, 531
Mva1269I GAATGC 1 cut(s) 376
MvaI CCWGG 1 cut(s) 391
MvnI CGCG 1 cut(s) 201
NciI CCSGG 1 cut(s) 531
NcoI CCATGG 1 cut(s) 330
NdeII GATC 1 cut(s) 644
NlaIII CATG 5 cut(s) 49, 74, 310, 334, 389
PctI GAATGC 1 cut(s) 376
PdmI GAANNNNTTC 1 cut(s) 154
PfeI GAWTC 1 cut(s) 283
PkrI GCNGC 4 cut(s) 274, 396, 521, 635
PleI GAGTC 2 cut(s) 173, 478
PpsI GAGTC 2 cut(s) 173, 478
PshAI GACNNNNGTC 1 cut(s) 137
Psp6I CCWGG 1 cut(s) 389
PspGI CCWGG 1 cut(s) 389
PvuII CAGCTG 1 cut(s) 275
SatI GCNGC 4 cut(s) 273, 395, 520, 634
Sau3AI GATC 1 cut(s) 644
SchI GAGTC 2 cut(s) 173, 478
ScrFI CCNGG 2 cut(s) 391, 531
SfaNI GCATC 3 cut(s) 368, 437, 643
SsiI CCGC 1 cut(s) 199
SspMI CTAG 2 cut(s) 444, 471
StyD4I CCNGG 2 cut(s) 389, 529
StyI CCWWGG 1 cut(s) 330
TaaI ACNGT 1 cut(s) 266
TaiI ACGT 2 cut(s) 25, 141
TaqI TCGA 1 cut(s) 628
TaqII GACCGA 1 cut(s) 149
TfiI GAWTC 1 cut(s) 283
TseI GCWGC 4 cut(s) 272, 394, 519, 633
TspDTI ATGAA 1 cut(s) 562
TspGWI ACGGA 2 cut(s) 185, 209
XmnI GAANNNNTTC 1 cut(s) 154
XspI CTAG 2 cut(s) 444, 471
ZraI GACGTC 1 cut(s) 139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.