Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0001501

Physical Location & Seq

Genomic Coordinates Forward (+)

21077006 .. 21079233

Gene Structure 2228 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00300710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 534 bp

ATGGAAGAACCAACGCCACCGACCCAAATCCCAAATCCTCCTCCGAACGCAGTCGAAACTCCCCCTCATCTTCATCCAAAGACCAAGAAGAGACCCCTCGACGGTGATGCCCAAATCCCCAACTCCGGCTACTTCAAAATTCGTGCCGTCCTCAGAGACATTCGTCCTAATGTTCTTGAGGTTCTCCGGACCCCTGACTTTCAGAAGTGTAAGGCAGCCAACGAAATTCAAGAACAGGTGAAGCTTCTGATGGAACTATACAAACAGATGACAGCACAAGCACTTTCCGCACCAAGATGTGACAATGTGCCAGAAGGGCAGCTTTCATCTGCTGCACCATCAGAACATAATCTTCATTCAGGTATATCTGGTCAGAAGCAGCAGGCTGAAGATGAACAAAATAAAGGGACTTATGTTGTTGGAGGATCAGCTTTTGGCTGGAACTTCATCACCTTTTCCACCACGGAACCAGTCTATTATGGTATGACAAAGGAGTCATTTCGAGCACAAGCAGCAAAGCTGACAACTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

177

Amino Acids

19.56

Weight (kDa)

6.91

Isoelectric Point (pI)

41.6

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001501)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G01730
fragaria_vesca	FvH4_7g14150 FvH4_7g29600
malus_domestica	MD01G1056800.v1.1 MD01G1057500.v1.1 MD01G1202200.v1.1 MD07G1139200.v1.1
prunus_persica	Prupe.2G167900_v2.0.a1 Prupe.2G295600_v2.0.a1 Prupe.2G295600_v2.0.a1
pyrus_communis	pycom01g08560 pycom01g08690 pycom01g08730 pycom01g21180 pycom07g13620 pycom07g13660 pycom07g13690 pycom07g13710 pycom07g13950
rosa_chinensis	RchiOBHm_Chr1g0354801 RchiOBHm_Chr1g0355051 RchiOBHm_Chr1g0377581
rosa_laevigata	RLG00000026515 RLG00000028180
rosa_multiflora	Rmu_sc0002832.1_g000009 Rmu_sc0003115.1_g000028 Rmu_sc0003940.1_g000007 Rmu_sc0012587.1_g000007 Rmu_sc0016725.1_g000003
rosa_roxburghii	Rroxscaffold_4G00281220 Rroxscaffold_4G00300710
rosa_rugosa	Rorug01G0244700 Rorug01G0403600
rosa_samantha	Rh1AG255700 Rh1AG257000 Rh1AG429200 Rh1BG226300 Rh1BG380100 Rh1CG238800 Rh1CG239100 Rh1CG240600 Rh1CG394300 Rh1DG253900 Rh1DG411300
rosa_wichuraiana	Rw0G011190 Rw1G022380 Rw1G022430 Rw1G022580 Rw1G022650 Rw1G022660 Rw1G036960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	493
AccIII	TCCGGA	1 cut(s)	186
AciI	CCGC	1 cut(s)	288
AclWI	GGATC	1 cut(s)	433
AcsI	RAATTY	2 cut(s)	138, 225
AcuI	CTGAAG	1 cut(s)	408
AfiI	CCNNNNNNNGG	2 cut(s)	101, 125
AgsI	TTSAA	2 cut(s)	136, 230
AluBI	AGCT	4 cut(s)	244, 322, 431, 520
AluI	AGCT	4 cut(s)	244, 322, 431, 520
Alw21I	GWGCWC	1 cut(s)	508
Alw26I	GTCTC	2 cut(s)	85, 150
AlwI	GGATC	1 cut(s)	433
Aor13HI	TCCGGA	1 cut(s)	186
ApeKI	GCWGC	5 cut(s)	215, 319, 332, 379, 512
ApoI	RAATTY	2 cut(s)	138, 225
AspS9I	GGNCC	1 cut(s)	189
AsuHPI	GGTGA	3 cut(s)	116, 250, 442
AvaII	GGWCC	1 cut(s)	189
Bbv12I	GWGCWC	1 cut(s)	508
BbvI	GCAGC	5 cut(s)	227, 319, 331, 391, 524
BccI	CCATC	2 cut(s)	244, 346
BceAI	ACGGC	1 cut(s)	131
BcgI	CGANNNNNNTGC	2 cut(s)	89, 123
BcoDI	GTCTC	2 cut(s)	85, 150
BglI	GCCNNNNNGGC	1 cut(s)	316
BisI	GCNGC	5 cut(s)	216, 320, 333, 380, 513
BlsI	GCNGC	5 cut(s)	217, 321, 334, 381, 514
Bme18I	GGWCC	1 cut(s)	189
BmgT120I	GGNCC	1 cut(s)	189
BmiI	GGNNCC	2 cut(s)	191, 468
BmsI	GCATC	1 cut(s)	97
BoxI	GACNNNNGTC	1 cut(s)	162
BpuEI	CTTGAG	1 cut(s)	197
BsaI	GGTCTC	1 cut(s)	85
BsaJI	CCNNGG	1 cut(s)	462
BsaWI	WCCGGW	1 cut(s)	186
Bsc4I	CCNNNNNNNGG	2 cut(s)	101, 125
Bse1I	ACTGG	1 cut(s)	470
BseAI	TCCGGA	1 cut(s)	186
BseDI	CCNNGG	1 cut(s)	462
BseGI	GGATG	1 cut(s)	73
BseLI	CCNNNNNNNGG	2 cut(s)	101, 125
BseMII	CTCAG	1 cut(s)	166
BseNI	ACTGG	1 cut(s)	470
BseRI	GAGGAG	1 cut(s)	30
BseXI	GCAGC	5 cut(s)	227, 319, 331, 391, 524
BsgI	GTGCAG	1 cut(s)	318
BsiHKAI	GWGCWC	1 cut(s)	508
BsiSI	CCGG	2 cut(s)	126, 187
BslFI	GGGAC	1 cut(s)	421
BslI	CCNNNNNNNGG	2 cut(s)	101, 125
BsmAI	GTCTC	2 cut(s)	85, 150
BsmFI	GGGAC	1 cut(s)	421
Bso31I	GGTCTC	1 cut(s)	85
Bsp1286I	GDGCHC	1 cut(s)	508
Bsp13I	TCCGGA	1 cut(s)	186
Bsp143I	GATC	1 cut(s)	425
BspACI	CCGC	1 cut(s)	288
BspCNI	CTCAG	1 cut(s)	165
BspEI	TCCGGA	1 cut(s)	186
BspLI	GGNNCC	2 cut(s)	191, 468
BspPI	GGATC	1 cut(s)	433
BspTNI	GGTCTC	1 cut(s)	85
BsrI	ACTGG	1 cut(s)	470
BssECI	CCNNGG	1 cut(s)	462
BssMI	GATC	1 cut(s)	425
Bst4CI	ACNGT	1 cut(s)	104
Bst6I	CTCTTC	1 cut(s)	83
BstC8I	GCNNGC	1 cut(s)	384
BstDEI	CTNAG	1 cut(s)	152
BstDSI	CCRYGG	1 cut(s)	462
BstF5I	GGATG	1 cut(s)	73
BstKTI	GATC	1 cut(s)	428
BstMAI	GTCTC	2 cut(s)	85, 150
BstMBI	GATC	1 cut(s)	425
BstMWI	GCNNNNNNNGC	3 cut(s)	287, 316, 512
BstPAI	GACNNNNGTC	1 cut(s)	162
BstV1I	GCAGC	5 cut(s)	227, 319, 331, 391, 524
BtgI	CCRYGG	1 cut(s)	462
BtsCI	GGATG	1 cut(s)	73
Cac8I	GCNNGC	1 cut(s)	384
Cfr13I	GGNCC	1 cut(s)	189
CviJI	RGCY	8 cut(s)	129, 218, 244, 322, 386, 431, 438, 520
CviKI_1	RGCY	8 cut(s)	129, 218, 244, 322, 386, 431, 438, 520
DdeI	CTNAG	1 cut(s)	152
DpnI	GATC	1 cut(s)	427
DpnII	GATC	1 cut(s)	425
DrdI	GACNNNNNNGTC	1 cut(s)	493
DseDI	GACNNNNNNGTC	1 cut(s)	493
Eam1104I	CTCTTC	1 cut(s)	83
EarI	CTCTTC	1 cut(s)	83
Eco31I	GGTCTC	1 cut(s)	85
Eco47I	GGWCC	1 cut(s)	189
Eco57I	CTGAAG	1 cut(s)	408
FaiI	YATR	7 cut(s)	259, 348, 365, 414, 480, 485, 532
FalI	AAGNNNNNCTT	2 cut(s)	306, 338
FaqI	GGGAC	1 cut(s)	421
Fnu4HI	GCNGC	5 cut(s)	216, 320, 333, 380, 513
FokI	GGATG	1 cut(s)	60
Fsp4HI	GCNGC	5 cut(s)	216, 320, 333, 380, 513
GluI	GCNGC	5 cut(s)	216, 320, 333, 380, 513
HapII	CCGG	2 cut(s)	126, 187
HindIII	AAGCTT	1 cut(s)	242
HinfI	GANTC	1 cut(s)	494
HpaII	CCGG	2 cut(s)	126, 187
HphI	GGTGA	3 cut(s)	116, 250, 442
Hpy188I	TCNGA	6 cut(s)	45, 155, 204, 249, 343, 375
Hpy188III	TCNNGA	3 cut(s)	176, 187, 230
Hpy99I	CGWCG	1 cut(s)	104
HpyAV	CCTTC	1 cut(s)	308
HpyCH4III	ACNGT	1 cut(s)	104
HpyCH4V	TGCA	2 cut(s)	335, 530
HpyF10VI	GCNNNNNNNGC	3 cut(s)	287, 316, 512
HpyF3I	CTNAG	1 cut(s)	152
Kpn2I	TCCGGA	1 cut(s)	186
Kzo9I	GATC	1 cut(s)	425
Lsp1109I	GCAGC	5 cut(s)	227, 319, 331, 391, 524
LweI	GCATC	1 cut(s)	97
MaeIII	GTNAC	1 cut(s)	299
MalI	GATC	1 cut(s)	427
MboI	GATC	1 cut(s)	425
MboII	GAAGA	5 cut(s)	17, 62, 100, 344, 401
MhlI	GDGCHC	1 cut(s)	508
MluCI	AATT	2 cut(s)	138, 225
MlyI	GAGTC	1 cut(s)	503
MmeI	TCCRAC	1 cut(s)	400
MnlI	CCTC	7 cut(s)	48, 51, 75, 107, 161, 172, 416
MroI	TCCGGA	1 cut(s)	186
MslI	CAYNNNNRTG	1 cut(s)	295
MspI	CCGG	2 cut(s)	126, 187
MwoI	GCNNNNNNNGC	3 cut(s)	287, 316, 512
NdeII	GATC	1 cut(s)	425
NlaIV	GGNNCC	2 cut(s)	191, 468
NmuCI	GTSAC	1 cut(s)	299
PkrI	GCNGC	5 cut(s)	217, 321, 334, 381, 514
PleI	GAGTC	1 cut(s)	502
PpsI	GAGTC	1 cut(s)	502
PshAI	GACNNNNGTC	1 cut(s)	162
PspN4I	GGNNCC	2 cut(s)	191, 468
PspPI	GGNCC	1 cut(s)	189
RseI	CAYNNNNRTG	1 cut(s)	295
SatI	GCNGC	5 cut(s)	216, 320, 333, 380, 513
Sau3AI	GATC	1 cut(s)	425
Sau96I	GGNCC	1 cut(s)	189
SchI	GAGTC	1 cut(s)	503
SduI	GDGCHC	1 cut(s)	508
SetI	ASST	8 cut(s)	183, 240, 246, 324, 364, 433, 455, 522
SfaNI	GCATC	1 cut(s)	97
SinI	GGWCC	1 cut(s)	189
SmiMI	CAYNNNNRTG	1 cut(s)	295
SmlI	CTYRAG	1 cut(s)	176
SmoI	CTYRAG	1 cut(s)	176
Sse9I	AATT	2 cut(s)	138, 225
SsiI	CCGC	1 cut(s)	288
TaaI	ACNGT	1 cut(s)	104
TaqI	TCGA	3 cut(s)	54, 99, 502
TasI	AATT	2 cut(s)	138, 225
TseFI	GTSAC	1 cut(s)	299
TseI	GCWGC	5 cut(s)	215, 319, 332, 379, 512
Tsp45I	GTSAC	1 cut(s)	299
TspDTI	ATGAA	5 cut(s)	62, 315, 344, 408, 436
TspGWI	ACGGA	1 cut(s)	479
VpaK11BI	GGWCC	1 cut(s)	189
XapI	RAATTY	2 cut(s)	138, 225

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.