AT1G63210

Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0002341
Physical Location & Seq
Forward (+)
23443688 .. 23447354
3667 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G63210.1

Sequence Viewer

Length: 3594 bp
ATGAGGAGGAAGAAAATGAAATATAAGCAAGGAACTGATTCGAACGCTTTACGATACGCTAATGATGTATTTGGTGATCCTGAAGAATTGTTGAAACTTCGGAAAAAGGATTTGAAGTATAACGAAAAGATCGAAAGAAAGTTAGAAGATGAGTTTGAACCAATGGTTCTCTCTGAGAAGTATATGACGGAGAAAGATGATGAAATTAGGAAGCTTGATGTTCCTGAGAGAATGCAGATATTTGAAGAAGCCATTGGAATTGTTTCCCTAGATGACATGAGCATTCAAGAAGAGAGCAACTGGATTTATGCTCGATTGCTTCAAGAACAAGGGCAGGGTTGTTTGATTAATAAGGATGACATTGTGAAGTTTTTAGAGATGTTTCATGTGCAGAAGTTAGAGATACCGTTTATAGCTATGTATCGGAAGGAGCAGTGTCGGAGTTTATTGGACAGTTCTGATGATGATCATGATGGTAGTGATTTCAATCTTGACAAGAAGCTTGAGACCAAGTGGCATAAAGTCTTGTGGATGATTCAAGATTTGGATAGAAAGTGGGTTCTTCTGCGGAAAAGGAAAACCGCGTTGTTTGGTTACTATACCAAACGTTTTGAAGAAGAAACCTGCATGTCTGATCTGAATAAGAGTCTTTTTGAATCTGTTATTAAGTCTCTTCAAGCGGCGGAGACAGAGAGAGAAGTTGATGATGTAGACTCAAAGTTCAACTTGCATTTTCCTCATTGTGAGATCGATGAAGGACAGTACAAGAGGCCGAATAGGAAATCGCAATATAGCATCTGCAGCAAATTTGGGATTAAGGAATTTGCAAACAAGTTTGGTTATAGCGCTGAGCAATTGGGACTAGCGTTGTCTCTTGAGAAAGTTTTTGTTGATGAGCTTGAAGATGCAAAGAAAACACCAGAGGAGATGGCATTGAACTATGAGTGTGCAATGTTTGGAGATTCTCAAGCTGTTCTTAAAGGTGCAAGGCATATGGCTGCGGTTGAGATAAGCTGCGAGCCATCGATTAGAAAGTATGTTCGTGGAATTTTTATGGAGAATGCAGTAGTCTCAACGAGTCCAACACCAGATGGGAATGTGGTTATAGATTCCTTCCATCGGTTTTCTGCGGTTAAGTGGTTAAGCGAGAAGCCATTGAGAAAGTTTGATGGTGTACAATGGCTTCTCATTCAGAAAGCAGAAGAGGAGAAGCTTCTTCAAGTAACTTTCAAGCTGCCTGAGAATCAGATGAATAGGATAATTAGTGAATGCAGTGAACACTATCTAAGTGTTGGTGTTAGTAAGTATGCTCAACTCTGGAACGAGCAGAGGAAATTGATACTGGAGGATGCGGTTCATGGTTTTGTTTTGCCGTCAATGGAGAAAGAAGCAAGATCCTTGCTAACTAGCAGAGCGAAGACTCAGTTGCTTTCAGAGTATGGACAGGTTTTATGGAACAAAGTGTCTTCAGGGCCATATCGAAGGAATAATAATACCTCGGAGGAGGAAGCTGCACCGAGGGTCCTAGCTTGTTGTTGGGGACCTGGAAATCCAGAAACTACATTTGTGATGCTTGATTCATCAGGAGAGCTGGTTGATGTGCTTTACTCAGGTTCCATTGGATTGCGGTCTCGGGATGTAAATGACCAGAAACGTAAAAAAATGGATCAAGATCGTTTTCTAAAGTTTATAAGAGACCATCAACCAGATGTTTTGGCTTTAGCAGCTGTTAATTTGAGTTGTGTACGCCTGAAGGATGAGATTTATGAGGCTATATTCCAAATGGTGGAAGAGCTGCCGTTGAATTATGTAGATGATAGGATTTATGATTTTCCATTGGTTTATGCGGATGAATCTCTTCCTAGGCTATACGAAAATTCTAGAATCTCAAGTGAACAACTACCTCAACAAGCAGGAATTGTGAAACGCGCAGTTTCTCTTGGACGTTATCTCCAGAATCCATTAGCAATGATCTCAACTTTATGCGGTCCAGGTAGAGATATTCTGTCTTGGAAGCTTCATTCTTTTCAAGATTTTCTTGATCCAGATGAGAAGTATGAGATGGTTGAACAAGTTATGGTTGACATAACGAATCAAGTTGGAATCGACATTAATCTGGCTGCGAGCCATGAATGGCTTTTTTCTCCTTTACAGTTTGTTTCAGGTCTTGGTCCTAGGAAAGCTGCATCTTTGCAGAAGTCTCTTGTTAGAGCTGGTTCGATATTTGTCCGCAAGGAACTGATAAATCATGGGATTGGTAAAAAGGTATTCGTAAATGCAGCTGGTTTCTTACGGATTCGTAGGAGCGGGTTGGCTTGTAGTAGCAGCCAATTTATTGATCTGTTGGATGACACTAGAATACATCCCGAATCATACGGTCTTGCGCAAGAATTGGCGAAAGATGTTTATGCTCATGATACTGTAAGAGGTGATGAGGATGATGCAATAGAGATGGCGATAGAGCATGTGAGAGATGAGCCAGCTTCTTTGAGGAAAATCGTTCTTGATGAGTACTTGAGAAGCAAGAACCAAGAGAATAAGAAGGAAACTTATAGTCTGATCATGAGAGAATTAAGCTGTGGATTTCAGGATTGGCGGAGTCTGTTTAAAGAGGTTGATTCAGATGAGGAGTTTTATATGATTTCAGGTGAAACCAAAGAAACTATTGGTGAAGGGAGGATTGTGCAGGCCACTGTTAAGAAAGTGACAAGTGGTAAAGCCAAATGTGTATTAGATTGTGGATTACCTGGGATTCTCTTGAAGGAAGATTACTCAGATGATGGTAGAGATATCGTTGATTTGTCTAACAAACTGTGTGAAGGCGATATCGTTACTTGCAAGGTCAAATCGATTCTAAAGCAAAGGTATCATGTGTTACTTGTCTGCAAAGAAAGCGAAATGAGAAAGCACAGGAATCTCGGGGATGTCGATGATTATTACCACGAGGAGAAACGAAATAGTGTCCTGATAGAGAAAGAGAAAGTTCCTAAAGAAAAGAAGCAGTTTAAGTCTCGGATGATTGTTCATCCTCGGTTTCAGAACATCACTGCCGAGCAAGCAACAGTGTATTTGTCTGATAAGAATATTGGAGAAAGCATTGTTCGTCCAAGCTCACGAGGACTGAATCATTTGACTTTGATGATCAAGATTTCTGATAATGTGTATGCTAACAAGGAGATAATCGAAGGTGAGAAGGAGAACAAAGATATAGTGAGCTTACAACGTATTGGGAAAACACTGAAAATTGGGAATGAAACCTTCGAGGATCTAGATGAGGTAATGGATCGGTATGTTGATCCTTTGGTAACTCATCTTATGACAATGCTAAACCACCGGAAATTTCGGACTGGGACAAAATCGGAAATAGATGATCTTCTTCGGGTTGAGAAGGGTGTGAATCCGAAAATGGTAGTTTACAGTTTTGGTGTTTCTCATGAACATCCAGGGAGCTTTATATTGTCTTACATACGATCCGCAAATCCGCACCACGAGTACATCGGTCTATACCCTAAGGGATTCAAGTTCAGGAAAAGAATGTTTGGGGATCTTGATAAACTGGCTGCTTATTTCAAGAGACATATCGATAATCAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000785 GO:0000988 GO:0000990 GO:0000991 GO:0002637 GO:0002682 GO:0002694 GO:0002697 GO:0002700 GO:0002703 GO:0002706 GO:0002712 GO:0002819 GO:0002822 GO:0002889 GO:0003006 GO:0003674 GO:0003682 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006325 GO:0006338 GO:0006342 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009506 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0010793 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030054 GO:0031056 GO:0031057 GO:0031060 GO:0031061 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031491 GO:0031974 GO:0031981 GO:0032239 GO:0032268 GO:0032269 GO:0032386 GO:0032501 GO:0032502 GO:0032774 GO:0032784 GO:0032786 GO:0032879 GO:0032880 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0033157 GO:0034243 GO:0034641 GO:0034645 GO:0034654 GO:0034728 GO:0035327 GO:0040029 GO:0042393 GO:0042789 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0043954 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045191 GO:0045595 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0046822 GO:0046825 GO:0046831 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050684 GO:0050776 GO:0050789 GO:0050793 GO:0050794 GO:0050864 GO:0050865 GO:0051049 GO:0051052 GO:0051128 GO:0051129 GO:0051147 GO:0051171 GO:0051172 GO:0051173 GO:0051223 GO:0051239 GO:0051246 GO:0051248 GO:0051249 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0055044 GO:0060255 GO:0060341 GO:0061085 GO:0061086 GO:0061458 GO:0065007 GO:0070013 GO:0070201 GO:0070827 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090087 GO:0090304 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902275 GO:1902679 GO:1902680 GO:1903311 GO:1903506 GO:1903507 GO:1903508 GO:1903827 GO:1905268 GO:2000026 GO:2000112 GO:2000113 GO:2000197 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DLD HHH_7 HTH_44 SH2_2 SPT6_acidic YqgF

Protein Analysis

1197

Amino Acids

138.13

Weight (kDa)

5.98

Isoelectric Point (pI)

43.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HTH_44 PF14641 89 - 200 3.9e-07 Helix-turn-helix DNA-binding domain of SPT6
Tex_central_region PF22706 303 - 473 1.8e-06 Tex central region-like
YqgF PF14639 505 - 661 7.5e-16 Holliday-junction resolvase-like of SPT6
HHH_7 PF14635 666 - 766 1.2e-21 Helix-hairpin-helix motif
Spt6_S1 PF21710 878 - 964 3.4e-06 Spt6, S1/OB domain
SH2_2 PF14633 980 - 1193 3.5e-68 SH2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1691
Acc16I TGCGCA 1 cut(s) 2385
Acc36I ACCTGC 1 cut(s) 632
AccB7I CCANNNNNTGG 1 cut(s) 1786
AccBSI CCGCTC 1 cut(s) 2307
AccI GTMKAC 1 cut(s) 711
AccII CGCG 2 cut(s) 584, 1929
AclI AACGTT 1 cut(s) 607
AclWI GGATC 9 cut(s) 71, 1389, 1674, 2036, 3273, 3290, 3291, 3465, 3552
AcsI RAATTY 5 cut(s) 806, 821, 1047, 1876, 3338
AcuI CTGAAG 3 cut(s) 102, 1452, 1772
AfaI GTAC 5 cut(s) 764, 1176, 1746, 2513, 3494
AfeI AGCGCT 1 cut(s) 847
AfiI CCNNNNNNNGG 2 cut(s) 1119, 1786
AjnI CCWGG 4 cut(s) 1543, 1990, 2746, 3442
AjuI GAANNNNNNNTTGG 2 cut(s) 237, 269
AlwI GGATC 9 cut(s) 71, 1389, 1674, 2036, 3273, 3290, 3291, 3465, 3552
Ama87I CYCGRG 2 cut(s) 1632, 2918
Aor51HI AGCGCT 1 cut(s) 847
AoxI GGCC 3 cut(s) 770, 1472, 2688
ApoI RAATTY 5 cut(s) 806, 821, 1047, 1876, 3338
AseI ATTAAT 2 cut(s) 348, 2112
Asp700I GAANNNNTTC 3 cut(s) 37, 262, 1857
AspA2I CCTAGG 2 cut(s) 1862, 2174
AspLEI GCGC 3 cut(s) 848, 1931, 2386
AspS9I GGNCC 5 cut(s) 1472, 1522, 1541, 1988, 2171
AsuHPI GGTGA 5 cut(s) 86, 2441, 2660, 2681, 3200
AsuII TTCGAA 1 cut(s) 41
AvaI CYCGRG 2 cut(s) 1632, 2918
AvaII GGWCC 4 cut(s) 1522, 1541, 1988, 2171
AvrII CCTAGG 2 cut(s) 1862, 2174
AxyI CCTNAGG 1 cut(s) 3510
BarI GAAGNNNNNNTAC 4 cut(s) 1167, 1199, 2753, 2785
BauI CACGAG 3 cut(s) 2942, 3114, 3488
BbsI GAAGAC 2 cut(s) 1424, 1458
BceAI ACGGC 2 cut(s) 1357, 1783
BciT130I CCWGG 4 cut(s) 1545, 1992, 2748, 3444
BclI TGATCA 3 cut(s) 466, 2559, 3141
BfaI CTAG 9 cut(s) 269, 863, 1407, 1526, 1863, 1881, 2175, 2355, 3269
BfmI CTRYAG 1 cut(s) 799
BfoI RGCGCY 1 cut(s) 849
BfuAI ACCTGC 1 cut(s) 632
BlnI CCTAGG 2 cut(s) 1862, 2174
BlpI GCTNAGC 1 cut(s) 849
BmcAI AGTACT 1 cut(s) 2513
Bme1390I CCNGG 4 cut(s) 1545, 1992, 2748, 3444
Bme18I GGWCC 4 cut(s) 1522, 1541, 1988, 2171
BmeT110I CYCGRG 2 cut(s) 1632, 2918
BmgT120I GGNCC 5 cut(s) 1472, 1522, 1541, 1988, 2171
BmiI GGNNCC 3 cut(s) 1523, 1542, 1615
BmrFI CCNGG 4 cut(s) 1545, 1992, 2748, 3444
BmrI ACTGGG 1 cut(s) 3357
BmsI GCATC 6 cut(s) 804, 895, 1339, 1560, 2195, 2431
BmuI ACTGGG 1 cut(s) 3357
BpiI GAAGAC 2 cut(s) 1424, 1458
BpmI CTGGAG 2 cut(s) 1364, 1937
Bpu1102I GCTNAGC 1 cut(s) 849
Bpu14I TTCGAA 1 cut(s) 41
BpuEI CTTGAG 5 cut(s) 524, 896, 951, 1873, 2536
Bsa29I ATCGAT 4 cut(s) 750, 1025, 2849, 3582
BsaBI GATNNNNATC 3 cut(s) 465, 486, 1671
BsaI GGTCTC 3 cut(s) 500, 1635, 1689
BsaJI CCNNGG 7 cut(s) 1497, 1517, 1862, 2174, 2747, 3029, 3443
BsaWI WCCGGW 1 cut(s) 3333
BsaXI ACNNNNNCTCC 4 cut(s) 1578, 1608, 1935, 1965
Bsc4I CCNNNNNNNGG 2 cut(s) 1119, 1786
Bse1I ACTGG 4 cut(s) 305, 1347, 3352, 3561
Bse21I CCTNAGG 1 cut(s) 3510
Bse3DI GCAATG 2 cut(s) 957, 1974
Bse8I GATNNNNATC 3 cut(s) 465, 486, 1671
BseBI CCWGG 4 cut(s) 1545, 1992, 2748, 3444
BseCI ATCGAT 4 cut(s) 750, 1025, 2849, 3582
BseDI CCNNGG 7 cut(s) 1497, 1517, 1862, 2174, 2747, 3029, 3443
BseJI GATNNNNATC 3 cut(s) 465, 486, 1671
BseLI CCNNNNNNNGG 2 cut(s) 1119, 1786
BseMI GCAATG 2 cut(s) 957, 1974
BseMII CTCAG 7 cut(s) 165, 216, 840, 1230, 1436, 1623, 2787
BseNI ACTGG 4 cut(s) 305, 1347, 3352, 3561
BseRI GAGGAG 6 cut(s) 19, 938, 1220, 1517, 2642, 2960
BsgI GTGCAG 3 cut(s) 410, 1497, 2705
Bsh1236I CGCG 2 cut(s) 584, 1929
BshFI GGCC 3 cut(s) 772, 1474, 2690
BshVI ATCGAT 4 cut(s) 750, 1025, 2849, 3582
BsiHKCI CYCGRG 2 cut(s) 1632, 2918
BsiSI CCGG 1 cut(s) 3334
BslFI GGGAC 3 cut(s) 873, 1554, 3364
BslI CCNNNNNNNGG 2 cut(s) 1119, 1786
BsmFI GGGAC 3 cut(s) 873, 1554, 3364
BsmI GAATGC 4 cut(s) 237, 282, 1066, 1274
BsnI GGCC 3 cut(s) 772, 1474, 2690
Bso31I GGTCTC 3 cut(s) 500, 1635, 1689
BsoBI CYCGRG 2 cut(s) 1632, 2918
Bsp119I TTCGAA 1 cut(s) 41
Bsp1407I TGTACA 1 cut(s) 1174
Bsp1720I GCTNAGC 1 cut(s) 849
BspANI GGCC 3 cut(s) 772, 1474, 2690
BspCNI CTCAG 7 cut(s) 166, 217, 841, 1231, 1435, 1622, 2786
BspDI ATCGAT 4 cut(s) 750, 1025, 2849, 3582
BspFNI CGCG 2 cut(s) 584, 1929
BspHI TCATGA 4 cut(s) 469, 2413, 2562, 3433
BspLI GGNNCC 3 cut(s) 1523, 1542, 1615
BspMAI CTGCAG 1 cut(s) 803
BspMI ACCTGC 1 cut(s) 632
BspPI GGATC 9 cut(s) 71, 1389, 1674, 2036, 3273, 3290, 3291, 3465, 3552
BspQI GCTCTTC 1 cut(s) 1785
BspT104I TTCGAA 1 cut(s) 41
BspTNI GGTCTC 3 cut(s) 500, 1635, 1689
BsrBI CCGCTC 1 cut(s) 2307
BsrDI GCAATG 2 cut(s) 957, 1974
BsrGI TGTACA 1 cut(s) 1174
BsrI ACTGG 4 cut(s) 305, 1347, 3352, 3561
BssECI CCNNGG 7 cut(s) 1497, 1517, 1862, 2174, 2747, 3029, 3443
BssSI CACGAG 3 cut(s) 2942, 3114, 3488
BssT1I CCWWGG 2 cut(s) 1862, 2174
Bst2BI CACGAG 3 cut(s) 2942, 3114, 3488
Bst2UI CCWGG 4 cut(s) 1545, 1992, 2748, 3444
Bst6I CTCTTC 5 cut(s) 285, 678, 1197, 1785, 1863
BstAUI TGTACA 1 cut(s) 1174
BstBI TTCGAA 1 cut(s) 41
BstC8I GCNNGC 5 cut(s) 1019, 2125, 2481, 2688, 3057
BstDEI CTNAG 9 cut(s) 174, 225, 849, 1239, 1286, 1422, 1609, 2773, 3510
BstFNI CGCG 2 cut(s) 584, 1929
BstH2I RGCGCY 1 cut(s) 849
BstHHI GCGC 3 cut(s) 848, 1931, 2386
BstMWI GCNNNNNNNGC 4 cut(s) 801, 1724, 2892, 3056
BstNI CCWGG 4 cut(s) 1545, 1992, 2748, 3444
BstNSI RCATGY 2 cut(s) 631, 2468
BstSCI CCNGG 4 cut(s) 1543, 1990, 2746, 3442
BstSFI CTRYAG 1 cut(s) 799
BstUI CGCG 2 cut(s) 584, 1929
BstV2I GAAGAC 2 cut(s) 1424, 1458
BstX2I RGATCY 3 cut(s) 1394, 3265, 3544
BstYI RGATCY 3 cut(s) 1394, 3265, 3544
Bsu15I ATCGAT 4 cut(s) 750, 1025, 2849, 3582
Bsu36I CCTNAGG 1 cut(s) 3510
BsuRI GGCC 3 cut(s) 772, 1474, 2690
BsuTUI ATCGAT 4 cut(s) 750, 1025, 2849, 3582
BtsI GCAGTG 3 cut(s) 440, 1279, 3045
BtsIMutI CAGTG 6 cut(s) 440, 1279, 2691, 3045, 3069, 3236
BveI ACCTGC 1 cut(s) 632
Cac8I GCNNGC 5 cut(s) 1019, 2125, 2481, 2688, 3057
CciI TCATGA 4 cut(s) 469, 2413, 2562, 3433
CfoI GCGC 3 cut(s) 848, 1931, 2386
Cfr13I GGNCC 5 cut(s) 1472, 1522, 1541, 1988, 2171
ClaI ATCGAT 4 cut(s) 750, 1025, 2849, 3582
Csp6I GTAC 5 cut(s) 763, 1175, 1745, 2512, 3493
CviQI GTAC 5 cut(s) 763, 1175, 1745, 2512, 3493
DdeI CTNAG 9 cut(s) 174, 225, 849, 1239, 1286, 1422, 1609, 2773, 3510
DraI TTTAAA 1 cut(s) 2608
Eam1104I CTCTTC 5 cut(s) 285, 678, 1197, 1785, 1863
EarI CTCTTC 5 cut(s) 285, 678, 1197, 1785, 1863
EciI GGCGGA 2 cut(s) 698, 2611
Eco130I CCWWGG 2 cut(s) 1862, 2174
Eco31I GGTCTC 3 cut(s) 500, 1635, 1689
Eco32I GATATC 2 cut(s) 2791, 2827
Eco47I GGWCC 4 cut(s) 1522, 1541, 1988, 2171
Eco47III AGCGCT 1 cut(s) 847
Eco57I CTGAAG 3 cut(s) 102, 1452, 1772
Eco81I CCTNAGG 1 cut(s) 3510
Eco88I CYCGRG 2 cut(s) 1632, 2918
EcoO109I RGGNCCY 2 cut(s) 1522, 1541
EcoRII CCWGG 4 cut(s) 1543, 1990, 2746, 3442
EcoRV GATATC 2 cut(s) 2791, 2827
EcoT14I CCWWGG 2 cut(s) 1862, 2174
ErhI CCWWGG 2 cut(s) 1862, 2174
FalI AAGNNNNNCTT 6 cut(s) 710, 742, 960, 992, 2022, 2054
FaqI GGGAC 3 cut(s) 873, 1554, 3364
FauI CCCGC 1 cut(s) 2300
FauNDI CATATG 1 cut(s) 993
FbaI TGATCA 3 cut(s) 466, 2559, 3141
FblI GTMKAC 1 cut(s) 711
FspBI CTAG 9 cut(s) 269, 863, 1407, 1526, 1863, 1881, 2175, 2355, 3269
FspI TGCGCA 1 cut(s) 2385
GlaI GCGC 3 cut(s) 847, 1930, 2385
GsuI CTGGAG 2 cut(s) 1364, 1937
HaeII RGCGCY 1 cut(s) 849
HaeIII GGCC 3 cut(s) 772, 1474, 2690
HapII CCGG 1 cut(s) 3334
HhaI GCGC 3 cut(s) 848, 1931, 2386
Hin6I GCGC 3 cut(s) 846, 1929, 2384
HinP1I GCGC 3 cut(s) 846, 1929, 2384
HincII GTYRAC 1 cut(s) 2083
HindII GTYRAC 1 cut(s) 2083
HindIII AAGCTT 4 cut(s) 212, 500, 1211, 2015
HpaII CCGG 1 cut(s) 3334
HphI GGTGA 5 cut(s) 86, 2441, 2660, 2681, 3200
Hpy166II GTNNAC 7 cut(s) 712, 1175, 1277, 1745, 1895, 2083, 3415
Hpy8I GTNNAC 7 cut(s) 712, 1175, 1277, 1745, 1895, 2083, 3415
HpyCH4IV ACGT 4 cut(s) 607, 1654, 1945, 3223
HpyF10VI GCNNNNNNNGC 4 cut(s) 801, 1724, 2892, 3056
HpyF3I CTNAG 9 cut(s) 174, 225, 849, 1239, 1286, 1422, 1609, 2773, 3510
HpySE526I ACGT 4 cut(s) 607, 1654, 1945, 3223
HspAI GCGC 3 cut(s) 846, 1929, 2384
Ksp22I TGATCA 3 cut(s) 466, 2559, 3141
LguI GCTCTTC 1 cut(s) 1785
LmnI GCTCC 3 cut(s) 430, 2304, 3447
LweI GCATC 6 cut(s) 804, 895, 1339, 1560, 2195, 2431
MaeI CTAG 9 cut(s) 269, 863, 1407, 1526, 1863, 1881, 2175, 2355, 3269
MaeII ACGT 4 cut(s) 607, 1654, 1945, 3223
MaeIII GTNAC 6 cut(s) 593, 1222, 2704, 2830, 2874, 3304
MbiI CCGCTC 1 cut(s) 2307
MfeI CAATTG 1 cut(s) 854
MflI RGATCY 3 cut(s) 1394, 3265, 3544
MlyI GAGTC 5 cut(s) 655, 707, 1087, 1414, 2608
MmeI TCCRAC 4 cut(s) 419, 1106, 2080, 2325
MroXI GAANNNNTTC 3 cut(s) 37, 262, 1857
MspA1I CMGCKG 2 cut(s) 1727, 2282
MspI CCGG 1 cut(s) 3334
MspR9I CCNGG 4 cut(s) 1545, 1992, 2748, 3444
MunI CAATTG 1 cut(s) 854
Mva1269I GAATGC 4 cut(s) 237, 282, 1066, 1274
MvaI CCWGG 4 cut(s) 1545, 1992, 2748, 3444
MvnI CGCG 2 cut(s) 584, 1929
MwoI GCNNNNNNNGC 4 cut(s) 801, 1724, 2892, 3056
NdeI CATATG 1 cut(s) 993
NlaIV GGNNCC 3 cut(s) 1523, 1542, 1615
NmeAIII GCCGAG 1 cut(s) 3076
NmuCI GTSAC 1 cut(s) 2704
NsbI TGCGCA 1 cut(s) 2385
NspI RCATGY 2 cut(s) 631, 2468
NspV TTCGAA 1 cut(s) 41
PagI TCATGA 4 cut(s) 469, 2413, 2562, 3433
PciSI GCTCTTC 1 cut(s) 1785
PcsI WCGNNNNNNNCGW 2 cut(s) 129, 2925
PctI GAATGC 4 cut(s) 237, 282, 1066, 1274
PdmI GAANNNNTTC 3 cut(s) 37, 262, 1857
PflMI CCANNNNNTGG 1 cut(s) 1786
PleI GAGTC 5 cut(s) 654, 707, 1086, 1414, 2607
PpsI GAGTC 5 cut(s) 654, 707, 1086, 1414, 2607
PpuMI RGGWCCY 2 cut(s) 1522, 1541
PshBI ATTAAT 2 cut(s) 348, 2112
PsiI TTATAA 1 cut(s) 1691
Psp1406I AACGTT 1 cut(s) 607
Psp5II RGGWCCY 2 cut(s) 1522, 1541
Psp6I CCWGG 4 cut(s) 1543, 1990, 2746, 3442
PspGI CCWGG 4 cut(s) 1543, 1990, 2746, 3442
PspN4I GGNNCC 3 cut(s) 1523, 1542, 1615
PspPI GGNCC 5 cut(s) 1472, 1522, 1541, 1988, 2171
PspPPI RGGWCCY 2 cut(s) 1522, 1541
PstI CTGCAG 1 cut(s) 803
PsuI RGATCY 3 cut(s) 1394, 3265, 3544
PvuII CAGCTG 2 cut(s) 1727, 2282
RsaI GTAC 5 cut(s) 764, 1176, 1746, 2513, 3494
RsaNI GTAC 5 cut(s) 763, 1175, 1745, 2512, 3493
SapI GCTCTTC 1 cut(s) 1785
Sau96I GGNCC 5 cut(s) 1472, 1522, 1541, 1988, 2171
ScaI AGTACT 1 cut(s) 2513
SchI GAGTC 5 cut(s) 655, 707, 1087, 1414, 2608
ScrFI CCNGG 4 cut(s) 1545, 1992, 2748, 3444
SfaNI GCATC 6 cut(s) 804, 895, 1339, 1560, 2195, 2431
SfcI CTRYAG 1 cut(s) 799
SfuI TTCGAA 1 cut(s) 41
SinI GGWCC 4 cut(s) 1522, 1541, 1988, 2171
SmlI CTYRAG 5 cut(s) 503, 875, 966, 1888, 2515
SmoI CTYRAG 5 cut(s) 503, 875, 966, 1888, 2515
SspI AATATT 1 cut(s) 3085
SspMI CTAG 9 cut(s) 269, 863, 1407, 1526, 1863, 1881, 2175, 2355, 3269
StyD4I CCNGG 4 cut(s) 1543, 1990, 2746, 3442
StyI CCWWGG 2 cut(s) 1862, 2174
TaiI ACGT 4 cut(s) 610, 1657, 1948, 3226
TaqII GACCGA 1 cut(s) 3488
TatI WGTACW 4 cut(s) 762, 1174, 2511, 3492
TauI GCSGC 1 cut(s) 683
TscAI CASTG 6 cut(s) 440, 1279, 2698, 3052, 3069, 3243
TseFI GTSAC 1 cut(s) 2704
Tsp45I GTSAC 1 cut(s) 2704
TspGWI ACGGA 2 cut(s) 203, 2308
TspRI CASTG 6 cut(s) 440, 1279, 2698, 3052, 3069, 3243
Van91I CCANNNNNTGG 1 cut(s) 1786
VpaK11BI GGWCC 4 cut(s) 1522, 1541, 1988, 2171
VspI ATTAAT 2 cut(s) 348, 2112
XapI RAATTY 5 cut(s) 806, 821, 1047, 1876, 3338
XbaI TCTAGA 2 cut(s) 1880, 3268
XceI RCATGY 2 cut(s) 631, 2468
XmaJI CCTAGG 2 cut(s) 1862, 2174
XmiI GTMKAC 1 cut(s) 711
XmnI GAANNNNTTC 3 cut(s) 37, 262, 1857
XspI CTAG 9 cut(s) 269, 863, 1407, 1526, 1863, 1881, 2175, 2355, 3269
ZrmI AGTACT 1 cut(s) 2513
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.