Rorug01G0479400

Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000001
OG0002341
Physical Location & Seq
Forward (+)
56810782 .. 56813262
2481 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug01G0479400.1

Sequence Viewer

Length: 2031 bp
ATGAGTTGCTTCAACTGGTTGCTCTATTTAGCTGCTGCTTTGGCCGTAATACGCAACGAGCTTCTGGTTGATTCAGCTAGTGACAAGAAGCACCACAGCGGACCAGTTGTTAATGTGACCAAGCACCTCATGTTCCCAGATTTCAACCTCTCCTACAACCCCCGAATCTTGAACGATGTAAAGCTCTTAGGCAGTGCCAAGCTTGCTTCAAAAACCAGTGCTATACAAATCCCCGACGGGTCTTATGTCACTGAACTCAGACACCAAGCCGGCCGAGCCATCTACTCTTCTTCAATCCGACTCCTGGACCCTCACACCGAAACCCCTGCCTCTTTCGAAACAACCTTCTCTTTTCAATTCCACAATGCCTCTTCATCTTCTCCTGAACGAATCCAAACTACTCAAAGCGGTGGTTATGGTAATGGCGGCAGTGGACTAGCCTTCGTCATCGTCCCGGATGAGTTCACAGTTGGCAGACCTGGTGCTTGGCTTGCCATGCTCAACGATGCTTGTGAAGATGACTACAAGGTCATAGCAATCGAATTCGACACACGTTTGAATCCAGAGTTTGGAGACCCTAATGATAACCATGTAGGTATCAACTTGGGGACTATTATCTCCACTGAAACAATCAACGCTTCTGATGTTGGTGTCTTCCTCAACGACGGTTCAGTCCACCGAGCTTGGATCAGCTACAACGGCTCACGCCGTTGGATGGAAATTCGTTTGGGATCAGACGACGGAAGTTACCCTTCAAAGCCAGTCTTCTCCGGATCTCTTGACCTCTCACCGTTTCTAAATGAGTACATGTTCGTTGGATTTTCGGCTTCCACAGGCAATCACACCCAAATCCACAGCGTGCTTTCTTGGAACTTCACTTCTGTTAGTCAAGCTTTTCTTCGTGTGCCGTCAATGGAGACATGTGAGAGCAAGATTGTTGTTACTGAAAACTCTCGTGCTGAGCCTCCCGGCACGTTCTTGATATTTATAGCTGTGCTGGCACTTGCTATAGCTGTTATGCTTAGCCTTTACTATAACAGCAAGCGTAGAAGTGCAAATTCGGATAGTGCTAGTATAGTGTTGCCGGAGAAGAAGCAGAGACCGAGGCCTCCAAACAAGCCTAGAAGCTTCACAATCTCGGAGATTTCATTGGCGACTAGGTCTTTCGGAGAGCTAGAGATACTTGGAGGTGGATCAAAAGGTGTGTGCTACCGAGGGAAGCTTTCGAATGGATGTCAAGTGGCAGTGAAGCGGTTTTCGCCTCAGTTTCTGAACTCGCAAGGGTTGGATAGGAGGAGATTGTTGAAGGAAATCAAGGGGATTAGCAGGTTTAGACACCCGAACTTGGTTTCCATTAGAGGTTGGTGTCAGGACAAGAAAGAGACTATGGTTCTGTATGAGTTTTTCTCCAATGGAAGCCTTGATAAGTGGCTGTTTGGTGTTGGTGTTCTTCCGTGGACTCGGAGGTTCAAGGTTGTGAGAGATGTGGCTGAAGCACTCAGTTACTTGCACTCCAATCAATTGGCGCACAAGAACTTGAAGACCACCAATGTCTTTCTTGATGTTAGTTTCCGGGCTGTTCTAGGAGACTTTGGGTTTGTGCTATGTGGAGCAGAGTCGAGAAGGTTTGAATCGACGGTGAGTCAAAGCGCGGATGTGTTTGAATTCGGTCTCTTTGTGTTGGAAGTGGTGGGAGGGAGGAAGAGGTTGGAGGCAGAGTTGGGTGAATTGGAGGAGAGGGACTTGCTGGACTTCACCTGGAGAATGCATGAAATTGGTGAAATGAGGAGGGTTGTGGATAAGAGAATGGGTGCAGTGATCAATTTGGATCAAGCAATTAGGGTTTTAGAGATTGGATTGCTTTGCACACTGAATGCGAGCAAAGGGAGGCCTAGTATGGAGCAAGTTGTGGAGTTTCTTTGCATGGAGAGGCCAATCCCTGAGTTGCCACAGACTCGACCTGTTGCTTTGTTCCCCTACAACAGCACCAATGCTCTTTGTACAGGTTATTCTTGTGCTCCTTTCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000785 GO:0000988 GO:0000990 GO:0000991 GO:0002637 GO:0002682 GO:0002694 GO:0002697 GO:0002700 GO:0002703 GO:0002706 GO:0002712 GO:0002819 GO:0002822 GO:0002889 GO:0003006 GO:0003674 GO:0003682 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006325 GO:0006338 GO:0006342 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009506 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0010793 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030054 GO:0031056 GO:0031057 GO:0031060 GO:0031061 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031491 GO:0031974 GO:0031981 GO:0032239 GO:0032268 GO:0032269 GO:0032386 GO:0032501 GO:0032502 GO:0032774 GO:0032784 GO:0032786 GO:0032879 GO:0032880 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0033157 GO:0034243 GO:0034641 GO:0034645 GO:0034654 GO:0034728 GO:0035327 GO:0040029 GO:0042393 GO:0042789 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0043954 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045191 GO:0045595 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0046822 GO:0046825 GO:0046831 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050684 GO:0050776 GO:0050789 GO:0050793 GO:0050794 GO:0050864 GO:0050865 GO:0051049 GO:0051052 GO:0051128 GO:0051129 GO:0051147 GO:0051171 GO:0051172 GO:0051173 GO:0051223 GO:0051239 GO:0051246 GO:0051248 GO:0051249 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0055044 GO:0060255 GO:0060341 GO:0061085 GO:0061086 GO:0061458 GO:0065007 GO:0070013 GO:0070201 GO:0070827 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090087 GO:0090304 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902275 GO:1902679 GO:1902680 GO:1903311 GO:1903506 GO:1903507 GO:1903508 GO:1903827 GO:1905268 GO:2000026 GO:2000112 GO:2000113 GO:2000197 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DLD HHH_7 HTH_44 SH2_2 SPT6_acidic YqgF

Protein Analysis

676

Amino Acids

75.19

Weight (kDa)

8.19

Isoelectric Point (pI)

41.75

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lectin_legB PF00139 58 - 296 2.5e-51 Legume lectin domain
Lectin_L-type_dom PF18483 84 - 286 1.2e-08 Legume lectin beta-barrel domain
Pkinase PF00069 391 - 536 3.4e-23 Protein kinase domain
PK_Tyr_Ser-Thr PF07714 393 - 533 9.8e-22 Protein tyrosine and serine/threonine kinase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 527, 671
Acc36I ACCTGC 1 cut(s) 1317
AccB7I CCANNNNNTGG 1 cut(s) 569
AccII CGCG 1 cut(s) 1652
AccIII TCCGGA 1 cut(s) 770
AciI CCGC 5 cut(s) 99, 408, 426, 1252, 1652
AclWI GGATC 5 cut(s) 695, 739, 781, 1201, 1836
AcoI YGGCCR 2 cut(s) 42, 271
AcsI RAATTY 4 cut(s) 542, 720, 1057, 1664
AcuI CTGAAG 1 cut(s) 1512
AdeI CACNNNGTG 1 cut(s) 859
AfaI GTAC 2 cut(s) 806, 2002
AfiI CCNNNNNNNGG 4 cut(s) 304, 569, 715, 1345
AflIII ACRYGT 3 cut(s) 551, 807, 920
AhdI GACNNNNNGTC 1 cut(s) 1641
AjnI CCWGG 3 cut(s) 303, 478, 1757
AloI GAACNNNNNNTCC 2 cut(s) 1334, 1366
Alw21I GWGCWC 1 cut(s) 2020
Alw26I GTCTC 6 cut(s) 567, 911, 1093, 1376, 1581, 1676
AlwI GGATC 5 cut(s) 695, 739, 781, 1201, 1836
AlwNI CAGNNNCTG 1 cut(s) 1270
Aor13HI TCCGGA 1 cut(s) 770
AoxI GGCC 5 cut(s) 42, 271, 1106, 1889, 1931
ApeKI GCWGC 2 cut(s) 32, 35
ApoI RAATTY 4 cut(s) 542, 720, 1057, 1664
ArsI GACNNNNNNTTYG 2 cut(s) 1580, 1612
AspLEI GCGC 2 cut(s) 1528, 1652
AspS9I GGNCC 2 cut(s) 101, 307
AsuC2I CCSGG 3 cut(s) 455, 969, 1574
AsuHPI GGTGA 5 cut(s) 780, 1651, 1736, 1747, 1790
AsuII TTCGAA 2 cut(s) 336, 1226
AvaII GGWCC 2 cut(s) 101, 307
BauI CACGAG 1 cut(s) 954
BbsI GAAGAC 3 cut(s) 646, 757, 1547
Bbv12I GWGCWC 1 cut(s) 2020
BbvI GCAGC 2 cut(s) 19, 22
BccI CCATC 2 cut(s) 287, 709
BceAI ACGGC 4 cut(s) 29, 693, 715, 892
BcgI CGANNNNNNTGC 2 cut(s) 308, 342
BciT130I CCWGG 3 cut(s) 305, 480, 1759
BclI TGATCA 1 cut(s) 1818
BcnI CCSGG 3 cut(s) 455, 969, 1574
BcoDI GTCTC 6 cut(s) 567, 911, 1093, 1376, 1581, 1676
BfaI CTAG 8 cut(s) 78, 437, 1071, 1122, 1158, 1175, 1583, 1893
BfmI CTRYAG 1 cut(s) 1008
BfuAI ACCTGC 1 cut(s) 1317
BisI GCNGC 3 cut(s) 33, 36, 427
BlpI GCTNAGC 2 cut(s) 960, 1022
BlsI GCNGC 3 cut(s) 34, 37, 428
Bme1390I CCNGG 6 cut(s) 305, 455, 480, 969, 1574, 1759
Bme18I GGWCC 2 cut(s) 101, 307
BmeRI GACNNNNNGTC 1 cut(s) 1641
BmgT120I GGNCC 2 cut(s) 101, 307
BmiI GGNNCC 1 cut(s) 309
BmrFI CCNGG 6 cut(s) 305, 455, 480, 969, 1574, 1759
BmsI GCATC 1 cut(s) 496
BpiI GAAGAC 3 cut(s) 646, 757, 1547
BplI GAGNNNNNCTC 2 cut(s) 1391, 1423
BpmI CTGGAG 1 cut(s) 1780
Bpu1102I GCTNAGC 2 cut(s) 960, 1022
Bpu14I TTCGAA 2 cut(s) 336, 1226
BpuMI CCSGG 3 cut(s) 455, 969, 1574
BsaI GGTCTC 3 cut(s) 567, 1093, 1676
BsaJI CCNNGG 3 cut(s) 1103, 1213, 1454
BsaWI WCCGGW 1 cut(s) 770
BsaXI ACNNNNNCTCC 6 cut(s) 1496, 1526, 1703, 1733, 1879, 1909
Bsc4I CCNNNNNNNGG 4 cut(s) 304, 569, 715, 1345
Bse118I RCCGGY 1 cut(s) 269
Bse1I ACTGG 4 cut(s) 20, 104, 216, 761
BseAI TCCGGA 1 cut(s) 770
BseBI CCWGG 3 cut(s) 305, 480, 1759
BseDI CCNNGG 3 cut(s) 1103, 1213, 1454
BseGI GGATG 4 cut(s) 463, 720, 1238, 1660
BseLI CCNNNNNNNGG 4 cut(s) 304, 569, 715, 1345
BseMII CTCAG 5 cut(s) 271, 951, 1277, 1513, 1932
BseNI ACTGG 4 cut(s) 20, 104, 216, 761
BseRI GAGGAG 3 cut(s) 1309, 1748, 1801
BseX3I CGGCCG 1 cut(s) 271
BseXI GCAGC 2 cut(s) 19, 22
BsgI GTGCAG 1 cut(s) 1833
Bsh1236I CGCG 1 cut(s) 1652
Bsh1285I CGRYCG 1 cut(s) 274
BshFI GGCC 5 cut(s) 44, 273, 1108, 1891, 1933
BsiEI CGRYCG 1 cut(s) 274
BsiHKAI GWGCWC 1 cut(s) 2020
BsiSI CCGG 6 cut(s) 270, 455, 771, 969, 1085, 1573
BslFI GGGAC 3 cut(s) 437, 622, 1754
BslI CCNNNNNNNGG 4 cut(s) 304, 569, 715, 1345
BsmAI GTCTC 6 cut(s) 567, 911, 1093, 1376, 1581, 1676
BsmFI GGGAC 3 cut(s) 437, 622, 1754
BsmI GAATGC 2 cut(s) 1770, 1879
BsnI GGCC 5 cut(s) 44, 273, 1108, 1891, 1933
Bso31I GGTCTC 3 cut(s) 567, 1093, 1676
Bsp119I TTCGAA 2 cut(s) 336, 1226
Bsp1286I GDGCHC 1 cut(s) 2020
Bsp13I TCCGGA 1 cut(s) 770
Bsp1407I TGTACA 1 cut(s) 2000
Bsp143I GATC 6 cut(s) 687, 731, 773, 1193, 1818, 1828
Bsp1720I GCTNAGC 2 cut(s) 960, 1022
BspACI CCGC 5 cut(s) 99, 408, 426, 1252, 1652
BspANI GGCC 5 cut(s) 44, 273, 1108, 1891, 1933
BspCNI CTCAG 5 cut(s) 270, 952, 1276, 1512, 1933
BspEI TCCGGA 1 cut(s) 770
BspFNI CGCG 1 cut(s) 1652
BspLI GGNNCC 1 cut(s) 309
BspMI ACCTGC 1 cut(s) 1317
BspPI GGATC 5 cut(s) 695, 739, 781, 1201, 1836
BspT104I TTCGAA 2 cut(s) 336, 1226
BspTNI GGTCTC 3 cut(s) 567, 1093, 1676
BsrFI RCCGGY 1 cut(s) 269
BsrGI TGTACA 1 cut(s) 2000
BsrI ACTGG 4 cut(s) 20, 104, 216, 761
BssAI RCCGGY 1 cut(s) 269
BssECI CCNNGG 3 cut(s) 1103, 1213, 1454
BssMI GATC 6 cut(s) 687, 731, 773, 1193, 1818, 1828
BssSI CACGAG 1 cut(s) 954
Bst2BI CACGAG 1 cut(s) 954
Bst2UI CCWGG 3 cut(s) 305, 480, 1759
Bst4CI ACNGT 4 cut(s) 469, 668, 792, 1639
Bst6I CTCTTC 3 cut(s) 292, 376, 1697
BstAUI TGTACA 1 cut(s) 2000
BstBI TTCGAA 2 cut(s) 336, 1226
BstC8I GCNNGC 7 cut(s) 204, 271, 492, 860, 999, 1043, 1879
BstDEI CTNAG 7 cut(s) 187, 257, 960, 1022, 1263, 1499, 1941
BstDSI CCRYGG 1 cut(s) 1454
BstF5I GGATG 4 cut(s) 463, 720, 1238, 1660
BstFNI CGCG 1 cut(s) 1652
BstHHI GCGC 2 cut(s) 1528, 1652
BstKTI GATC 6 cut(s) 690, 734, 776, 1196, 1821, 1831
BstMAI GTCTC 6 cut(s) 567, 911, 1093, 1376, 1581, 1676
BstMBI GATC 6 cut(s) 687, 731, 773, 1193, 1818, 1828
BstMCI CGRYCG 1 cut(s) 274
BstMWI GCNNNNNNNGC 8 cut(s) 41, 203, 275, 491, 496, 699, 998, 1258
BstNI CCWGG 3 cut(s) 305, 480, 1759
BstNSI RCATGY 2 cut(s) 811, 924
BstSCI CCNGG 6 cut(s) 303, 453, 478, 967, 1572, 1757
BstSFI CTRYAG 1 cut(s) 1008
BstUI CGCG 1 cut(s) 1652
BstV1I GCAGC 2 cut(s) 19, 22
BstV2I GAAGAC 3 cut(s) 646, 757, 1547
BstX2I RGATCY 1 cut(s) 773
BstXI CCANNNNNNTGG 1 cut(s) 1522
BstYI RGATCY 1 cut(s) 773
BstZI CGGCCG 1 cut(s) 271
BsuRI GGCC 5 cut(s) 44, 273, 1108, 1891, 1933
BtgI CCRYGG 1 cut(s) 1454
BtsCI GGATG 4 cut(s) 463, 720, 1238, 1660
BtsI GCAGTG 4 cut(s) 199, 436, 1251, 1821
BtsIMutI CAGTG 8 cut(s) 199, 223, 249, 436, 621, 1251, 1821, 1868
BveI ACCTGC 1 cut(s) 1317
Cac8I GCNNGC 7 cut(s) 204, 271, 492, 860, 999, 1043, 1879
CaiI CAGNNNCTG 1 cut(s) 1270
CfoI GCGC 2 cut(s) 1528, 1652
Cfr10I RCCGGY 1 cut(s) 269
Cfr13I GGNCC 2 cut(s) 101, 307
CsiI ACCWGGT 1 cut(s) 478
Csp6I GTAC 2 cut(s) 805, 2001
CspCI CAANNNNNGTGG 2 cut(s) 665, 700
CviAII CATG 7 cut(s) 130, 496, 590, 808, 921, 1769, 1924
CviQI GTAC 2 cut(s) 805, 2001
DdeI CTNAG 7 cut(s) 187, 257, 960, 1022, 1263, 1499, 1941
DpnI GATC 6 cut(s) 689, 733, 775, 1195, 1820, 1830
DpnII GATC 6 cut(s) 687, 731, 773, 1193, 1818, 1828
DraIII CACNNNGTG 1 cut(s) 859
DrdI GACNNNNNNGTC 2 cut(s) 527, 671
DriI GACNNNNNGTC 1 cut(s) 1641
DseDI GACNNNNNNGTC 2 cut(s) 527, 671
EaeI YGGCCR 2 cut(s) 42, 271
EagI CGGCCG 1 cut(s) 271
Eam1104I CTCTTC 3 cut(s) 292, 376, 1697
Eam1105I GACNNNNNGTC 1 cut(s) 1641
EarI CTCTTC 3 cut(s) 292, 376, 1697
EclXI CGGCCG 1 cut(s) 271
Eco147I AGGCCT 2 cut(s) 1108, 1891
Eco31I GGTCTC 3 cut(s) 567, 1093, 1676
Eco47I GGWCC 2 cut(s) 101, 307
Eco52I CGGCCG 1 cut(s) 271
Eco57I CTGAAG 1 cut(s) 1512
EcoRI GAATTC 2 cut(s) 542, 1664
EcoRII CCWGG 3 cut(s) 303, 478, 1757
EcoT22I ATGCAT 1 cut(s) 1770
FaeI CATG 7 cut(s) 133, 499, 593, 811, 924, 1772, 1927
FalI AAGNNNNNCTT 6 cut(s) 736, 768, 749, 781, 882, 914
FaqI GGGAC 3 cut(s) 437, 622, 1754
FatI CATG 7 cut(s) 129, 495, 589, 807, 920, 1768, 1923
FbaI TGATCA 1 cut(s) 1818
Fnu4HI GCNGC 3 cut(s) 33, 36, 427
FokI GGATG 4 cut(s) 470, 727, 1245, 1667
Fsp4HI GCNGC 3 cut(s) 33, 36, 427
FspBI CTAG 8 cut(s) 78, 437, 1071, 1122, 1158, 1175, 1583, 1893
GlaI GCGC 2 cut(s) 1527, 1651
GluI GCNGC 3 cut(s) 33, 36, 427
GsuI CTGGAG 1 cut(s) 1780
HaeIII GGCC 5 cut(s) 44, 273, 1108, 1891, 1933
HapII CCGG 6 cut(s) 270, 455, 771, 969, 1085, 1573
HhaI GCGC 2 cut(s) 1528, 1652
Hin1II CATG 7 cut(s) 133, 499, 593, 811, 924, 1772, 1927
Hin6I GCGC 2 cut(s) 1526, 1650
HinP1I GCGC 2 cut(s) 1526, 1650
HindIII AAGCTT 4 cut(s) 200, 891, 1126, 1220
HpaII CCGG 6 cut(s) 270, 455, 771, 969, 1085, 1573
HphI GGTGA 5 cut(s) 780, 1651, 1736, 1747, 1790
Hpy166II GTNNAC 4 cut(s) 434, 465, 676, 1458
Hpy188I TCNGA 9 cut(s) 260, 299, 643, 736, 1063, 1141, 1169, 1272, 1464
Hpy188III TCNNGA 9 cut(s) 169, 383, 563, 771, 779, 979, 1370, 1559, 1620
Hpy8I GTNNAC 4 cut(s) 434, 465, 676, 1458
Hpy99I CGWCG 4 cut(s) 239, 668, 743, 1639
HpyAV CCTTC 5 cut(s) 355, 451, 762, 1300, 1617
HpyCH4III ACNGT 4 cut(s) 469, 668, 792, 1639
HpyCH4IV ACGT 2 cut(s) 553, 974
HpyCH4V TGCA 6 cut(s) 1055, 1510, 1768, 1814, 1866, 1923
HpyF10VI GCNNNNNNNGC 8 cut(s) 41, 203, 275, 491, 496, 699, 998, 1258
HpyF3I CTNAG 7 cut(s) 187, 257, 960, 1022, 1263, 1499, 1941
HpySE526I ACGT 2 cut(s) 553, 974
Hsp92II CATG 7 cut(s) 133, 499, 593, 811, 924, 1772, 1927
HspAI GCGC 2 cut(s) 1526, 1650
Kpn2I TCCGGA 1 cut(s) 770
KroI GCCGGC 1 cut(s) 269
KroNI GCCGGC 1 cut(s) 271
Ksp22I TGATCA 1 cut(s) 1818
Kzo9I GATC 6 cut(s) 687, 731, 773, 1193, 1818, 1828
LmnI GCTCC 3 cut(s) 1610, 1900, 2023
Lsp1109I GCAGC 2 cut(s) 19, 22
LweI GCATC 1 cut(s) 496
MabI ACCWGGT 1 cut(s) 478
MaeI CTAG 8 cut(s) 78, 437, 1071, 1122, 1158, 1175, 1583, 1893
MaeII ACGT 2 cut(s) 553, 974
MaeIII GTNAC 6 cut(s) 80, 115, 247, 746, 940, 1502
MalI GATC 6 cut(s) 689, 733, 775, 1195, 1820, 1830
MboI GATC 6 cut(s) 687, 731, 773, 1193, 1818, 1828
MfeI CAATTG 1 cut(s) 1520
MflI RGATCY 1 cut(s) 773
MhlI GDGCHC 1 cut(s) 2020
MlyI GAGTC 5 cut(s) 294, 1453, 1625, 1651, 1948
MmeI TCCRAC 6 cut(s) 322, 692, 796, 1266, 1662, 1689
Mph1103I ATGCAT 1 cut(s) 1770
MroI TCCGGA 1 cut(s) 770
MroNI GCCGGC 1 cut(s) 269
MseI TTAA 1 cut(s) 111
MspA1I CMGCKG 1 cut(s) 99
MspI CCGG 6 cut(s) 270, 455, 771, 969, 1085, 1573
MspR9I CCNGG 6 cut(s) 305, 455, 480, 969, 1574, 1759
MunI CAATTG 1 cut(s) 1520
Mva1269I GAATGC 2 cut(s) 1770, 1879
MvaI CCWGG 3 cut(s) 305, 480, 1759
MvnI CGCG 1 cut(s) 1652
MwoI GCNNNNNNNGC 8 cut(s) 41, 203, 275, 491, 496, 699, 998, 1258
NaeI GCCGGC 1 cut(s) 271
NciI CCSGG 3 cut(s) 455, 969, 1574
NdeII GATC 6 cut(s) 687, 731, 773, 1193, 1818, 1828
NgoMIV GCCGGC 1 cut(s) 269
NlaIII CATG 7 cut(s) 133, 499, 593, 811, 924, 1772, 1927
NlaIV GGNNCC 1 cut(s) 309
NmeAIII GCCGAG 1 cut(s) 299
NmuCI GTSAC 3 cut(s) 80, 115, 247
NsiI ATGCAT 1 cut(s) 1770
NspI RCATGY 2 cut(s) 811, 924
NspV TTCGAA 2 cut(s) 336, 1226
PceI AGGCCT 2 cut(s) 1108, 1891
PciI ACATGT 2 cut(s) 807, 920
PctI GAATGC 2 cut(s) 1770, 1879
PdiI GCCGGC 1 cut(s) 271
PfeI GAWTC 5 cut(s) 71, 165, 390, 559, 1631
PflFI GACNNNGTC 1 cut(s) 1159
PflMI CCANNNNNTGG 1 cut(s) 569
PfoI TCCNGGA 2 cut(s) 303, 453
PkrI GCNGC 3 cut(s) 34, 37, 428
PleI GAGTC 5 cut(s) 294, 1453, 1624, 1650, 1948
PpsI GAGTC 5 cut(s) 294, 1453, 1624, 1650, 1948
PscI ACATGT 2 cut(s) 807, 920
Psp6I CCWGG 3 cut(s) 303, 478, 1757
PspGI CCWGG 3 cut(s) 303, 478, 1757
PspN4I GGNNCC 1 cut(s) 309
PspPI GGNCC 2 cut(s) 101, 307
PstNI CAGNNNCTG 1 cut(s) 1270
PsuI RGATCY 1 cut(s) 773
PsyI GACNNNGTC 1 cut(s) 1159
RsaI GTAC 2 cut(s) 806, 2002
RsaNI GTAC 2 cut(s) 805, 2001
SaqAI TTAA 1 cut(s) 111
SatI GCNGC 3 cut(s) 33, 36, 427
Sau3AI GATC 6 cut(s) 687, 731, 773, 1193, 1818, 1828
Sau96I GGNCC 2 cut(s) 101, 307
SchI GAGTC 5 cut(s) 294, 1453, 1625, 1651, 1948
ScrFI CCNGG 6 cut(s) 305, 455, 480, 969, 1574, 1759
SduI GDGCHC 1 cut(s) 2020
SexAI ACCWGGT 1 cut(s) 478
SfaNI GCATC 1 cut(s) 496
SfcI CTRYAG 1 cut(s) 1008
SfuI TTCGAA 2 cut(s) 336, 1226
SinI GGWCC 2 cut(s) 101, 307
SseBI AGGCCT 2 cut(s) 1108, 1891
SsiI CCGC 5 cut(s) 99, 408, 426, 1252, 1652
SspMI CTAG 8 cut(s) 78, 437, 1071, 1122, 1158, 1175, 1583, 1893
StuI AGGCCT 2 cut(s) 1108, 1891
StyD4I CCNGG 6 cut(s) 303, 453, 478, 967, 1572, 1757
TaaI ACNGT 4 cut(s) 469, 668, 792, 1639
TaiI ACGT 2 cut(s) 556, 977
TaqI TCGA 7 cut(s) 336, 540, 546, 1226, 1619, 1634, 1957
TaqII GACCGA 2 cut(s) 1117, 1658
TatI WGTACW 2 cut(s) 804, 2000
TauI GCSGC 1 cut(s) 429
TfiI GAWTC 5 cut(s) 71, 165, 390, 559, 1631
Tru1I TTAA 1 cut(s) 111
Tru9I TTAA 1 cut(s) 111
TscAI CASTG 8 cut(s) 199, 223, 256, 436, 628, 1251, 1821, 1875
TseFI GTSAC 3 cut(s) 80, 115, 247
TseI GCWGC 2 cut(s) 32, 35
Tsp45I GTSAC 3 cut(s) 80, 115, 247
TspDTI ATGAA 3 cut(s) 363, 1137, 1785
TspGWI ACGGA 2 cut(s) 756, 1443
TspRI CASTG 8 cut(s) 199, 223, 256, 436, 628, 1251, 1821, 1875
Tth111I GACNNNGTC 1 cut(s) 1159
Van91I CCANNNNNTGG 1 cut(s) 569
VpaK11BI GGWCC 2 cut(s) 101, 307
XapI RAATTY 4 cut(s) 542, 720, 1057, 1664
XceI RCATGY 2 cut(s) 811, 924
XspI CTAG 8 cut(s) 78, 437, 1071, 1122, 1158, 1175, 1583, 1893
Zsp2I ATGCAT 1 cut(s) 1770
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.