RchiOBHm_Chr2g0087911

Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
2
OG0002341
Physical Location & Seq
Reverse (-)
2613811 .. 2615284
1474 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ46330

Sequence Viewer

Length: 1371 bp
ATGCACCATGTGCAAAAATTGGATATTCCCTTCATTGCTATGTACCGAAAAGAGGACTGCCTTAGCTTACTGAAAGATCCTGAACAGCCTGAAGAAGAAAAATCTACGTTAAAGTGGCACAAGGTACTGTGGGCCATTCAGGAATTGCACAAAAAGTGGCTGCTGTTTCAGAATCAGAAAAGGGCATTGCAATTTCACTACAATAAGCGCTTTGAGGAAGAATCTCGACGAGGACTCTTACATGATGAGACTCCACAGCTTTTTGAATCAATTATGAAGTCACTCCGAGATGCAGAGTCAGAGAGAGAGGTCGAGGATGTCAACAGCAAGTTTAACTTGCATTTCCCTGCAGGTGAGGGTCAGGATGCTATTGATATCAGTAGTGATCCAGGTGTGAGGAAGTATGTCCGCAGCAATTACTTTGATTTCGTTGAAGTATCAGTCACGAGCACAAAACCTGGCTTATATATGGATTGTCAAAAAAAGCAATTGAATAGATTTGAGGATGCACAATGGTTTCTTGTCCAAAAGGCTGAAGAGGAGAATCTTGTACAAGTCACTATTAAGCTGCCCGAAGACCGTCTGAACAGGTTGATACGCGACTTAAGCAACTACAATCTTAGTAAATTATCTGCACAACTGTGGAACGAGCAGCGCAAGTTGATATTGCAAGACGCTCTTTCCAATTTCCTTCTGCCTTCAATGGAGAAAGAAGCAAGATCCTTGTTGGTCAGTAGAGCAAAAAACTGGTTACTTATGCAATGTGGAAAGGCTTTGTGGAATAGAGTCTCCATGGCACCGCCATATAAACGGAACCAAACTGCACCACCTAGGGTCATGGCTTGCTGTTGGGGTCCCGGGGACCCTGCAACCACTTTAGTGATGTTGGATTCATGTGGGGAGCTGCTAGATGTGCTTTGCATAGGGACTATCAGCTGGGAGAATCTCACCTGGACCGTACCATTCTTTGATAAACCTACTAGACTGCGTATGGAAAATGATGATAAACGTATTCTGCAGTTCGTGAATGATCACGAACCTGATCTTGCTATCATAGGAGCGACTAATATGTCTTGTGATATGCTGAAATTACAACTTCTGGGAATTGAATCATTACAGGTACCCGAGAAAATGATCCCCCTAAGGGTTGTATATGGGGATGAAACTTTGGCTTGCCTGTATGAAAGTTCTCAGATTTCGGCTGATCAGCTACCTGGACAATCAGGCATGGTCCGGCGGGCTGTGGCTCTTGGGCGTTATCTTCAAAATCCACTGGCAATGGTTGCCACACTTTGTGGACCGGGACGAGAGATCTTATCTTGGAAACCACTCACTTCTCCTTTCTCACCCCAGATGAGAAGTACGCGATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000785 GO:0000988 GO:0000990 GO:0000991 GO:0002637 GO:0002682 GO:0002694 GO:0002697 GO:0002700 GO:0002703 GO:0002706 GO:0002712 GO:0002819 GO:0002822 GO:0002889 GO:0003006 GO:0003674 GO:0003682 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006325 GO:0006338 GO:0006342 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009506 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0010793 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030054 GO:0031056 GO:0031057 GO:0031060 GO:0031061 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031491 GO:0031974 GO:0031981 GO:0032239 GO:0032268 GO:0032269 GO:0032386 GO:0032501 GO:0032502 GO:0032774 GO:0032784 GO:0032786 GO:0032879 GO:0032880 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0033157 GO:0034243 GO:0034641 GO:0034645 GO:0034654 GO:0034728 GO:0035327 GO:0040029 GO:0042393 GO:0042789 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0043954 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045191 GO:0045595 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0046822 GO:0046825 GO:0046831 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050684 GO:0050776 GO:0050789 GO:0050793 GO:0050794 GO:0050864 GO:0050865 GO:0051049 GO:0051052 GO:0051128 GO:0051129 GO:0051147 GO:0051171 GO:0051172 GO:0051173 GO:0051223 GO:0051239 GO:0051246 GO:0051248 GO:0051249 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0055044 GO:0060255 GO:0060341 GO:0061085 GO:0061086 GO:0061458 GO:0065007 GO:0070013 GO:0070201 GO:0070827 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090087 GO:0090304 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902275 GO:1902679 GO:1902680 GO:1903311 GO:1903506 GO:1903507 GO:1903508 GO:1903827 GO:1905268 GO:2000026 GO:2000112 GO:2000113 GO:2000197 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DLD HHH_7 HTH_44 SH2_2 SPT6_acidic YqgF

Protein Analysis

456

Amino Acids

52.66

Weight (kDa)

6.49

Isoelectric Point (pI)

59.15

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YqgF PF14639 278 - 432 6.7e-12 Holliday-junction resolvase-like of SPT6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 341
AasI GACNNNNNNGTC 1 cut(s) 1069
Acc36I ACCTGC 1 cut(s) 341
Acc65I GGTACC 1 cut(s) 1120
AccB1I GGYRCC 2 cut(s) 796, 1120
AccII CGCG 2 cut(s) 600, 1366
AciI CCGC 3 cut(s) 409, 800, 1237
AclWI GGATC 4 cut(s) 71, 380, 714, 1129
AcuI CTGAAG 2 cut(s) 111, 555
AdeI CACNNNGTG 2 cut(s) 10, 1295
AfaI GTAC 6 cut(s) 44, 126, 552, 960, 1122, 1363
AfeI AGCGCT 1 cut(s) 209
AfiI CCNNNNNNNGG 2 cut(s) 52, 1144
AflII CTTAAG 1 cut(s) 604
AgsI TTSAA 6 cut(s) 266, 434, 493, 702, 1109, 1265
AjnI CCWGG 4 cut(s) 388, 457, 950, 1213
AleI CACNNNNGTG 2 cut(s) 640, 878
AluBI AGCT 6 cut(s) 66, 259, 568, 904, 936, 1210
AluI AGCT 6 cut(s) 66, 259, 568, 904, 936, 1210
Alw21I GWGCWC 1 cut(s) 452
Alw26I GTCTC 2 cut(s) 242, 793
AlwI GGATC 4 cut(s) 71, 380, 714, 1129
Ama87I CYCGRG 2 cut(s) 857, 1124
Aor51HI AGCGCT 1 cut(s) 209
AoxI GGCC 1 cut(s) 132
ApeKI GCWGC 5 cut(s) 160, 411, 568, 652, 904
Asp718I GGTACC 1 cut(s) 1120
AspA2I CCTAGG 1 cut(s) 830
AspLEI GCGC 2 cut(s) 210, 657
AspS9I GGNCC 6 cut(s) 132, 854, 862, 954, 1231, 1298
AsuC2I CCSGG 3 cut(s) 858, 859, 1302
AsuHPI GGTGA 3 cut(s) 365, 940, 1338
AvaI CYCGRG 2 cut(s) 857, 1124
AvaII GGWCC 5 cut(s) 854, 862, 954, 1231, 1298
AvrII CCTAGG 1 cut(s) 830
AxyI CCTNAGG 1 cut(s) 1142
BanI GGYRCC 2 cut(s) 796, 1120
BauI CACGAG 1 cut(s) 445
BbsI GAAGAC 1 cut(s) 582
Bbv12I GWGCWC 1 cut(s) 452
BbvI GCAGC 5 cut(s) 147, 423, 555, 664, 891
BciT130I CCWGG 4 cut(s) 390, 459, 952, 1215
BclI TGATCA 2 cut(s) 1030, 1204
BcnI CCSGG 3 cut(s) 858, 859, 1302
BcoDI GTCTC 2 cut(s) 242, 793
BfaI CTAG 3 cut(s) 831, 908, 981
BfmI CTRYAG 2 cut(s) 348, 1016
BfoI RGCGCY 1 cut(s) 211
BfrI CTTAAG 1 cut(s) 604
BfuAI ACCTGC 1 cut(s) 341
BglII AGATCT 1 cut(s) 1311
BisI GCNGC 5 cut(s) 161, 412, 569, 653, 905
BlnI CCTAGG 1 cut(s) 830
BlsI GCNGC 5 cut(s) 162, 413, 570, 654, 906
Bme1390I CCNGG 7 cut(s) 390, 459, 858, 859, 952, 1215, 1302
Bme18I GGWCC 5 cut(s) 854, 862, 954, 1231, 1298
BmeT110I CYCGRG 2 cut(s) 857, 1124
BmgT120I GGNCC 6 cut(s) 132, 854, 862, 954, 1231, 1298
BmiI GGNNCC 7 cut(s) 798, 815, 855, 856, 863, 864, 1122
BmrFI CCNGG 7 cut(s) 390, 459, 858, 859, 952, 1215, 1302
BmsI GCATC 3 cut(s) 280, 355, 496
BpiI GAAGAC 1 cut(s) 582
Bpu10I CCTNAGC 1 cut(s) 62
BpuMI CCSGG 3 cut(s) 858, 859, 1302
BsaJI CCNNGG 4 cut(s) 792, 830, 857, 858
Bsc4I CCNNNNNNNGG 2 cut(s) 52, 1144
Bse1I ACTGG 2 cut(s) 752, 1278
Bse21I CCTNAGG 1 cut(s) 1142
Bse3DI GCAATG 4 cut(s) 33, 185, 767, 1284
BseBI CCWGG 4 cut(s) 390, 459, 952, 1215
BseDI CCNNGG 4 cut(s) 792, 830, 857, 858
BseGI GGATG 4 cut(s) 322, 370, 511, 1165
BseLI CCNNNNNNNGG 2 cut(s) 52, 1144
BseMI GCAATG 4 cut(s) 33, 185, 767, 1284
BseMII CTCAG 1 cut(s) 1205
BseNI ACTGG 2 cut(s) 752, 1278
BseRI GAGGAG 1 cut(s) 554
BseXI GCAGC 5 cut(s) 147, 423, 555, 664, 891
BseYI CCCAGC 1 cut(s) 936
BsgI GTGCAG 2 cut(s) 618, 807
Bsh1236I CGCG 2 cut(s) 600, 1366
BshFI GGCC 1 cut(s) 134
BshNI GGYRCC 2 cut(s) 796, 1120
BsiHKAI GWGCWC 1 cut(s) 452
BsiHKCI CYCGRG 2 cut(s) 857, 1124
BsiSI CCGG 3 cut(s) 858, 1234, 1301
BslFI GGGAC 4 cut(s) 840, 875, 940, 1317
BslI CCNNNNNNNGG 2 cut(s) 52, 1144
BsmAI GTCTC 2 cut(s) 242, 793
BsmFI GGGAC 4 cut(s) 840, 875, 940, 1317
BsnI GGCC 1 cut(s) 134
BsoBI CYCGRG 2 cut(s) 857, 1124
Bsp1286I GDGCHC 1 cut(s) 452
Bsp1407I TGTACA 1 cut(s) 550
Bsp143I GATC 8 cut(s) 76, 385, 719, 1030, 1042, 1134, 1204, 1311
Bsp19I CCATGG 1 cut(s) 792
BspACI CCGC 3 cut(s) 409, 800, 1237
BspANI GGCC 1 cut(s) 134
BspCNI CTCAG 1 cut(s) 1204
BspFNI CGCG 2 cut(s) 600, 1366
BspLI GGNNCC 7 cut(s) 798, 815, 855, 856, 863, 864, 1122
BspMAI CTGCAG 2 cut(s) 352, 1020
BspMI ACCTGC 1 cut(s) 341
BspPI GGATC 4 cut(s) 71, 380, 714, 1129
BspT107I GGYRCC 2 cut(s) 796, 1120
BspTI CTTAAG 1 cut(s) 604
BsrDI GCAATG 4 cut(s) 33, 185, 767, 1284
BsrGI TGTACA 1 cut(s) 550
BsrI ACTGG 2 cut(s) 752, 1278
BssECI CCNNGG 4 cut(s) 792, 830, 857, 858
BssMI GATC 8 cut(s) 76, 385, 719, 1030, 1042, 1134, 1204, 1311
BssSI CACGAG 1 cut(s) 445
BssT1I CCWWGG 2 cut(s) 792, 830
Bst2BI CACGAG 1 cut(s) 445
Bst2UI CCWGG 4 cut(s) 390, 459, 952, 1215
Bst4CI ACNGT 4 cut(s) 129, 581, 642, 958
Bst6I CTCTTC 1 cut(s) 531
BstAFI CTTAAG 1 cut(s) 604
BstAPI GCANNNNNTGC 2 cut(s) 10, 1283
BstAUI TGTACA 1 cut(s) 550
BstC8I GCNNGC 3 cut(s) 844, 1174, 1239
BstDEI CTNAG 4 cut(s) 62, 620, 1142, 1191
BstDSI CCRYGG 1 cut(s) 792
BstF5I GGATG 4 cut(s) 322, 370, 511, 1165
BstFNI CGCG 2 cut(s) 600, 1366
BstH2I RGCGCY 1 cut(s) 211
BstHHI GCGC 2 cut(s) 210, 657
BstKTI GATC 8 cut(s) 79, 388, 722, 1033, 1045, 1137, 1207, 1314
BstMAI GTCTC 2 cut(s) 242, 793
BstMBI GATC 8 cut(s) 76, 385, 719, 1030, 1042, 1134, 1204, 1311
BstMWI GCNNNNNNNGC 4 cut(s) 10, 606, 913, 1283
BstNI CCWGG 4 cut(s) 390, 459, 952, 1215
BstSCI CCNGG 7 cut(s) 388, 457, 856, 857, 950, 1213, 1300
BstSFI CTRYAG 2 cut(s) 348, 1016
BstUI CGCG 2 cut(s) 600, 1366
BstV1I GCAGC 5 cut(s) 147, 423, 555, 664, 891
BstV2I GAAGAC 1 cut(s) 582
BstX2I RGATCY 3 cut(s) 76, 719, 1311
BstYI RGATCY 3 cut(s) 76, 719, 1311
Bsu36I CCTNAGG 1 cut(s) 1142
BsuRI GGCC 1 cut(s) 134
BtgI CCRYGG 1 cut(s) 792
BtsCI GGATG 4 cut(s) 322, 370, 511, 1165
BtsIMutI CAGTG 1 cut(s) 1271
BveI ACCTGC 1 cut(s) 341
Cac8I GCNNGC 3 cut(s) 844, 1174, 1239
CfoI GCGC 2 cut(s) 210, 657
Cfr13I GGNCC 6 cut(s) 132, 854, 862, 954, 1231, 1298
Cfr9I CCCGGG 1 cut(s) 857
CseI GACGC 1 cut(s) 683
Csp6I GTAC 6 cut(s) 43, 125, 551, 959, 1121, 1362
CviAII CATG 6 cut(s) 8, 242, 793, 838, 894, 1228
CviQI GTAC 6 cut(s) 43, 125, 551, 959, 1121, 1362
DdeI CTNAG 4 cut(s) 62, 620, 1142, 1191
DpnI GATC 8 cut(s) 78, 387, 721, 1032, 1044, 1136, 1206, 1313
DpnII GATC 8 cut(s) 76, 385, 719, 1030, 1042, 1134, 1204, 1311
DraIII CACNNNGTG 2 cut(s) 10, 1295
DrdI GACNNNNNNGTC 1 cut(s) 1069
DseDI GACNNNNNNGTC 1 cut(s) 1069
Eam1104I CTCTTC 1 cut(s) 531
EarI CTCTTC 1 cut(s) 531
Eco130I CCWWGG 2 cut(s) 792, 830
Eco32I GATATC 1 cut(s) 376
Eco47I GGWCC 5 cut(s) 854, 862, 954, 1231, 1298
Eco47III AGCGCT 1 cut(s) 209
Eco57I CTGAAG 2 cut(s) 111, 555
Eco81I CCTNAGG 1 cut(s) 1142
Eco88I CYCGRG 2 cut(s) 857, 1124
EcoO109I RGGNCCY 2 cut(s) 854, 862
EcoRII CCWGG 4 cut(s) 388, 457, 950, 1213
EcoRV GATATC 1 cut(s) 376
EcoT14I CCWWGG 2 cut(s) 792, 830
ErhI CCWWGG 2 cut(s) 792, 830
FaeI CATG 6 cut(s) 11, 245, 796, 841, 897, 1231
FalI AAGNNNNNCTT 4 cut(s) 320, 352, 663, 695
FaqI GGGAC 4 cut(s) 840, 875, 940, 1317
FatI CATG 6 cut(s) 7, 241, 792, 837, 893, 1227
FauI CCCGC 1 cut(s) 1230
FbaI TGATCA 2 cut(s) 1030, 1204
Fnu4HI GCNGC 5 cut(s) 161, 412, 569, 653, 905
FokI GGATG 4 cut(s) 329, 377, 518, 1172
Fsp4HI GCNGC 5 cut(s) 161, 412, 569, 653, 905
FspBI CTAG 3 cut(s) 831, 908, 981
GlaI GCGC 2 cut(s) 209, 656
GluI GCNGC 5 cut(s) 161, 412, 569, 653, 905
GsaI CCCAGC 1 cut(s) 940
HaeII RGCGCY 1 cut(s) 211
HaeIII GGCC 1 cut(s) 134
HapII CCGG 3 cut(s) 858, 1234, 1301
HgaI GACGC 1 cut(s) 683
HhaI GCGC 2 cut(s) 210, 657
Hin1II CATG 6 cut(s) 11, 245, 796, 841, 897, 1231
Hin6I GCGC 2 cut(s) 208, 655
HinP1I GCGC 2 cut(s) 208, 655
HincII GTYRAC 1 cut(s) 322
HindII GTYRAC 1 cut(s) 322
HpaII CCGG 3 cut(s) 858, 1234, 1301
HphI GGTGA 3 cut(s) 365, 940, 1338
Hpy166II GTNNAC 2 cut(s) 322, 1298
Hpy188I TCNGA 6 cut(s) 171, 177, 287, 301, 585, 1194
Hpy188III TCNNGA 7 cut(s) 80, 140, 225, 362, 445, 1024, 1034
Hpy8I GTNNAC 2 cut(s) 322, 1298
Hpy99I CGWCG 1 cut(s) 231
HpyAV CCTTC 3 cut(s) 40, 701, 708
HpyCH4III ACNGT 4 cut(s) 129, 581, 642, 958
HpyCH4IV ACGT 2 cut(s) 107, 1009
HpyF10VI GCNNNNNNNGC 4 cut(s) 10, 606, 913, 1283
HpyF3I CTNAG 4 cut(s) 62, 620, 1142, 1191
HpySE526I ACGT 2 cut(s) 107, 1009
Hsp92II CATG 6 cut(s) 11, 245, 796, 841, 897, 1231
HspAI GCGC 2 cut(s) 208, 655
KflI GGGWCCC 2 cut(s) 854, 862
KpnI GGTACC 1 cut(s) 1124
Ksp22I TGATCA 2 cut(s) 1030, 1204
Kzo9I GATC 8 cut(s) 76, 385, 719, 1030, 1042, 1134, 1204, 1311
LmnI GCTCC 2 cut(s) 901, 1058
Lsp1109I GCAGC 5 cut(s) 147, 423, 555, 664, 891
LweI GCATC 3 cut(s) 280, 355, 496
MaeI CTAG 3 cut(s) 831, 908, 981
MaeII ACGT 2 cut(s) 107, 1009
MaeIII GTNAC 4 cut(s) 279, 442, 556, 750
MalI GATC 8 cut(s) 78, 387, 721, 1032, 1044, 1136, 1206, 1313
MboI GATC 8 cut(s) 76, 385, 719, 1030, 1042, 1134, 1204, 1311
MboII GAAGA 6 cut(s) 104, 107, 230, 548, 587, 1253
MfeI CAATTG 1 cut(s) 488
MflI RGATCY 3 cut(s) 76, 719, 1311
MhlI GDGCHC 1 cut(s) 452
MlyI GAGTC 4 cut(s) 228, 244, 305, 795
MmeI TCCRAC 1 cut(s) 867
MnlI CCTC 9 cut(s) 46, 208, 224, 301, 307, 349, 390, 496, 532
MseI TTAA 4 cut(s) 110, 333, 564, 605
MslI CAYNNNNRTG 3 cut(s) 38, 640, 878
MspA1I CMGCKG 1 cut(s) 936
MspCI CTTAAG 1 cut(s) 604
MspI CCGG 3 cut(s) 858, 1234, 1301
MspR9I CCNGG 7 cut(s) 390, 459, 858, 859, 952, 1215, 1302
MunI CAATTG 1 cut(s) 488
MvaI CCWGG 4 cut(s) 390, 459, 952, 1215
MvnI CGCG 2 cut(s) 600, 1366
MwoI GCNNNNNNNGC 4 cut(s) 10, 606, 913, 1283
NciI CCSGG 3 cut(s) 858, 859, 1302
NcoI CCATGG 1 cut(s) 792
NdeII GATC 8 cut(s) 76, 385, 719, 1030, 1042, 1134, 1204, 1311
NlaIII CATG 6 cut(s) 11, 245, 796, 841, 897, 1231
NlaIV GGNNCC 7 cut(s) 798, 815, 855, 856, 863, 864, 1122
NmuCI GTSAC 3 cut(s) 279, 442, 556
OliI CACNNNNGTG 2 cut(s) 640, 878
PaqCI CACCTGC 1 cut(s) 341
PfeI GAWTC 7 cut(s) 172, 221, 266, 544, 890, 943, 1109
PkrI GCNGC 5 cut(s) 162, 413, 570, 654, 906
PleI GAGTC 4 cut(s) 228, 244, 304, 794
PpsI GAGTC 4 cut(s) 228, 244, 304, 794
PpuMI RGGWCCY 2 cut(s) 854, 862
Psp5II RGGWCCY 2 cut(s) 854, 862
Psp6I CCWGG 4 cut(s) 388, 457, 950, 1213
PspFI CCCAGC 1 cut(s) 936
PspGI CCWGG 4 cut(s) 388, 457, 950, 1213
PspN4I GGNNCC 7 cut(s) 798, 815, 855, 856, 863, 864, 1122
PspPI GGNCC 6 cut(s) 132, 854, 862, 954, 1231, 1298
PspPPI RGGWCCY 2 cut(s) 854, 862
PstI CTGCAG 2 cut(s) 352, 1020
PsuI RGATCY 3 cut(s) 76, 719, 1311
PvuII CAGCTG 1 cut(s) 936
RsaI GTAC 6 cut(s) 44, 126, 552, 960, 1122, 1363
RsaNI GTAC 6 cut(s) 43, 125, 551, 959, 1121, 1362
RseI CAYNNNNRTG 3 cut(s) 38, 640, 878
SaqAI TTAA 4 cut(s) 110, 333, 564, 605
SatI GCNGC 5 cut(s) 161, 412, 569, 653, 905
Sau3AI GATC 8 cut(s) 76, 385, 719, 1030, 1042, 1134, 1204, 1311
Sau96I GGNCC 6 cut(s) 132, 854, 862, 954, 1231, 1298
SbfI CCTGCAGG 1 cut(s) 352
SchI GAGTC 4 cut(s) 228, 244, 305, 795
ScrFI CCNGG 7 cut(s) 390, 459, 858, 859, 952, 1215, 1302
SdaI CCTGCAGG 1 cut(s) 352
SduI GDGCHC 1 cut(s) 452
SfaNI GCATC 3 cut(s) 280, 355, 496
SfcI CTRYAG 2 cut(s) 348, 1016
SinI GGWCC 5 cut(s) 854, 862, 954, 1231, 1298
SmaI CCCGGG 1 cut(s) 859
SmiMI CAYNNNNRTG 3 cut(s) 38, 640, 878
SmlI CTYRAG 1 cut(s) 604
SmoI CTYRAG 1 cut(s) 604
Sse8387I CCTGCAGG 1 cut(s) 352
SsiI CCGC 3 cut(s) 409, 800, 1237
SspMI CTAG 3 cut(s) 831, 908, 981
StyD4I CCNGG 7 cut(s) 388, 457, 856, 857, 950, 1213, 1300
StyI CCWWGG 2 cut(s) 792, 830
TaaI ACNGT 4 cut(s) 129, 581, 642, 958
TaiI ACGT 2 cut(s) 110, 1012
TaqI TCGA 2 cut(s) 226, 312
TatI WGTACW 1 cut(s) 550
TfiI GAWTC 7 cut(s) 172, 221, 266, 544, 890, 943, 1109
Tru1I TTAA 4 cut(s) 110, 333, 564, 605
Tru9I TTAA 4 cut(s) 110, 333, 564, 605
TscAI CASTG 1 cut(s) 1278
TseFI GTSAC 3 cut(s) 279, 442, 556
TseI GCWGC 5 cut(s) 160, 411, 568, 652, 904
Tsp45I GTSAC 3 cut(s) 279, 442, 556
TspDTI ATGAA 5 cut(s) 22, 290, 882, 1176, 1197
TspGWI ACGGA 1 cut(s) 826
TspMI CCCGGG 1 cut(s) 857
TspRI CASTG 1 cut(s) 1278
Vha464I CTTAAG 1 cut(s) 604
VpaK11BI GGWCC 5 cut(s) 854, 862, 954, 1231, 1298
XmaI CCCGGG 1 cut(s) 857
XmaJI CCTAGG 1 cut(s) 830
XspI CTAG 3 cut(s) 831, 908, 981
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.