RLG00000015871

Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0002341
Physical Location & Seq
Forward (+)
2008387 .. 2009499
1113 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015871

Sequence Viewer

Length: 900 bp
ATGCACAATGGTTGCTTGTCCAGAAGGCCGAAGAGGATCGATAATCTTAGTAATGTTACATTTGAGCTCCCAGAAGACCAACTAAATAAGTTATTAAGCGACTTTGAGAAGTTTTATCTTAGAGCTAGTGTCAGTAAATCTGCACAACTATGGAACGAACAGCGGAAGTTGATATTGCAGAATGTTATTTTTGATTTCCTTCTACCTTTAATGGAGAAAGAAGCAAGATCCTTGTTGACCAGTAGAGCAAAAAACTGGTTATTGATGGAATATGGAAAAGCTTTGTGGGATAAAGTCCCCATGGCTCCGGCATGTCAACATAAGGAAAATGAGATTAAGTCAGATAATGAAGCTTCTGCTTCACCGAGGGTCATGGCTTGCTGTTGGGGTCAAGCTGAAGGTACTCTGGTGATGTTAGATTCATATGGGGAATTGCTAGATGTGCTATGTATAGGTTCCTTTTCCTGGGAGTCTTTCAACTACACTGAAAACTGCAATGATACTGTTACTTGGCTCCATAATTATTATGAAAAAAAACGGGTCTTGAAGTTCGTGACTGGTCACCAACCAAGTGTTGTGGTTATCGGAGCTGTTAATATGTCTTGTACTCTCATAAGCCAACTTATGTTCTGGAAAGTGAGTGAAAAGACTATAACTTTCTGTCCCTTCAGGATTGTTTATGGGGATGAACTTTGGGTCGCCTGTATGAAAATTCTCAGACCTCTTCCAATCAGCTACCTGGGCAATCAGGTACGAATTAATTGTCTCCTAACTTATAATGTCAAGCGGGAAGTAGCCCTTGGGCGTTATAATCAAAATCCACTAGCAATGGTTGCCATACTCTGCGGACCTGGAAGAGATCGATATCTTATCTTGGAAATTGCTCAGTTCCCCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000785 GO:0000988 GO:0000990 GO:0000991 GO:0002637 GO:0002682 GO:0002694 GO:0002697 GO:0002700 GO:0002703 GO:0002706 GO:0002712 GO:0002819 GO:0002822 GO:0002889 GO:0003006 GO:0003674 GO:0003682 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006325 GO:0006338 GO:0006342 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009506 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0010793 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030054 GO:0031056 GO:0031057 GO:0031060 GO:0031061 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031491 GO:0031974 GO:0031981 GO:0032239 GO:0032268 GO:0032269 GO:0032386 GO:0032501 GO:0032502 GO:0032774 GO:0032784 GO:0032786 GO:0032879 GO:0032880 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0033157 GO:0034243 GO:0034641 GO:0034645 GO:0034654 GO:0034728 GO:0035327 GO:0040029 GO:0042393 GO:0042789 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0043954 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045191 GO:0045595 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0046822 GO:0046825 GO:0046831 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050684 GO:0050776 GO:0050789 GO:0050793 GO:0050794 GO:0050864 GO:0050865 GO:0051049 GO:0051052 GO:0051128 GO:0051129 GO:0051147 GO:0051171 GO:0051172 GO:0051173 GO:0051223 GO:0051239 GO:0051246 GO:0051248 GO:0051249 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0055044 GO:0060255 GO:0060341 GO:0061085 GO:0061086 GO:0061458 GO:0065007 GO:0070013 GO:0070201 GO:0070827 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090087 GO:0090304 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902275 GO:1902679 GO:1902680 GO:1903311 GO:1903506 GO:1903507 GO:1903508 GO:1903827 GO:1905268 GO:2000026 GO:2000112 GO:2000113 GO:2000197 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DLD HHH_7 HTH_44 SH2_2 SPT6_acidic YqgF

Protein Analysis

300

Amino Acids

34.46

Weight (kDa)

8.42

Isoelectric Point (pI)

50.61

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 777, 810
AciI CCGC 3 cut(s) 163, 787, 846
AclWI GGATC 2 cut(s) 44, 222
AcsI RAATTY 1 cut(s) 711
AcuI CTGAAG 2 cut(s) 417, 652
AfaI GTAC 3 cut(s) 403, 607, 753
AfiI CCNNNNNNNGG 1 cut(s) 465
AgsI TTSAA 2 cut(s) 478, 547
AjnI CCWGG 3 cut(s) 464, 738, 850
AjuI GAANNNNNNNTTGG 2 cut(s) 783, 815
AluBI AGCT 7 cut(s) 67, 125, 281, 353, 395, 590, 735
AluI AGCT 7 cut(s) 67, 125, 281, 353, 395, 590, 735
Alw21I GWGCWC 1 cut(s) 69
Alw26I GTCTC 1 cut(s) 770
AlwI GGATC 2 cut(s) 44, 222
AoxI GGCC 1 cut(s) 26
ApoI RAATTY 1 cut(s) 711
ArsI GACNNNNNNTTYG 2 cut(s) 748, 780
AseI ATTAAT 1 cut(s) 759
AspS9I GGNCC 1 cut(s) 848
AsuHPI GGTGA 3 cut(s) 354, 421, 554
AvaII GGWCC 1 cut(s) 848
BaeI ACNNNNGTAYC 2 cut(s) 393, 426
BanII GRGCYC 1 cut(s) 69
BbsI GAAGAC 1 cut(s) 81
Bbv12I GWGCWC 1 cut(s) 69
BccI CCATC 1 cut(s) 259
BciT130I CCWGG 3 cut(s) 466, 740, 852
BcoDI GTCTC 1 cut(s) 770
BfaI CTAG 3 cut(s) 126, 437, 824
Bme1390I CCNGG 3 cut(s) 466, 740, 852
Bme18I GGWCC 1 cut(s) 848
BmgT120I GGNCC 1 cut(s) 848
BmiI GGNNCC 3 cut(s) 306, 457, 515
BmrFI CCNGG 3 cut(s) 466, 740, 852
BpiI GAAGAC 1 cut(s) 81
Bsa29I ATCGAT 2 cut(s) 39, 862
BsaBI GATNNNNATC 1 cut(s) 864
BsaJI CCNNGG 5 cut(s) 300, 365, 465, 739, 799
Bsc4I CCNNNNNNNGG 1 cut(s) 465
Bse1I ACTGG 3 cut(s) 240, 260, 562
Bse3DI GCAATG 2 cut(s) 502, 834
Bse8I GATNNNNATC 1 cut(s) 864
BseBI CCWGG 3 cut(s) 466, 740, 852
BseCI ATCGAT 2 cut(s) 39, 862
BseDI CCNNGG 5 cut(s) 300, 365, 465, 739, 799
BseGI GGATG 1 cut(s) 691
BseJI GATNNNNATC 1 cut(s) 864
BseLI CCNNNNNNNGG 1 cut(s) 465
BseMI GCAATG 2 cut(s) 502, 834
BseMII CTCAG 2 cut(s) 730, 899
BseNI ACTGG 3 cut(s) 240, 260, 562
BsgI GTGCAG 1 cut(s) 126
BshFI GGCC 1 cut(s) 28
BshVI ATCGAT 2 cut(s) 39, 862
BsiHKAI GWGCWC 1 cut(s) 69
BsiSI CCGG 1 cut(s) 308
BslFI GGGAC 2 cut(s) 281, 648
BslI CCNNNNNNNGG 1 cut(s) 465
BsmAI GTCTC 1 cut(s) 770
BsmFI GGGAC 2 cut(s) 281, 648
BsnI GGCC 1 cut(s) 28
Bsp1286I GDGCHC 1 cut(s) 69
Bsp143I GATC 3 cut(s) 36, 227, 859
Bsp19I CCATGG 1 cut(s) 300
BspACI CCGC 3 cut(s) 163, 787, 846
BspANI GGCC 1 cut(s) 28
BspCNI CTCAG 2 cut(s) 729, 898
BspDI ATCGAT 2 cut(s) 39, 862
BspLI GGNNCC 3 cut(s) 306, 457, 515
BspPI GGATC 2 cut(s) 44, 222
BsrDI GCAATG 2 cut(s) 502, 834
BsrI ACTGG 3 cut(s) 240, 260, 562
BssECI CCNNGG 5 cut(s) 300, 365, 465, 739, 799
BssMI GATC 3 cut(s) 36, 227, 859
BssT1I CCWWGG 2 cut(s) 300, 799
Bst2UI CCWGG 3 cut(s) 466, 740, 852
Bst4CI ACNGT 1 cut(s) 505
Bst6I CTCTTC 3 cut(s) 26, 729, 850
BstAPI GCANNNNNTGC 1 cut(s) 833
BstC8I GCNNGC 1 cut(s) 379
BstDEI CTNAG 4 cut(s) 47, 119, 716, 885
BstDSI CCRYGG 1 cut(s) 300
BstEII GGTNACC 1 cut(s) 560
BstF5I GGATG 1 cut(s) 691
BstKTI GATC 3 cut(s) 39, 230, 862
BstMAI GTCTC 1 cut(s) 770
BstMBI GATC 3 cut(s) 36, 227, 859
BstMWI GCNNNNNNNGC 3 cut(s) 442, 741, 833
BstNI CCWGG 3 cut(s) 466, 740, 852
BstNSI RCATGY 1 cut(s) 315
BstPI GGTNACC 1 cut(s) 560
BstSCI CCNGG 3 cut(s) 464, 738, 850
BstV2I GAAGAC 1 cut(s) 81
BstX2I RGATCY 1 cut(s) 227
BstYI RGATCY 1 cut(s) 227
Bsu15I ATCGAT 2 cut(s) 39, 862
BsuRI GGCC 1 cut(s) 28
BsuTUI ATCGAT 2 cut(s) 39, 862
BtgI CCRYGG 1 cut(s) 300
BtsCI GGATG 1 cut(s) 691
BtsIMutI CAGTG 1 cut(s) 483
Cac8I GCNNGC 1 cut(s) 379
Cfr13I GGNCC 1 cut(s) 848
ClaI ATCGAT 2 cut(s) 39, 862
Csp6I GTAC 3 cut(s) 402, 606, 752
CspCI CAANNNNNGTGG 2 cut(s) 558, 593
CviAII CATG 3 cut(s) 301, 312, 373
CviQI GTAC 3 cut(s) 402, 606, 752
DdeI CTNAG 4 cut(s) 47, 119, 716, 885
DpnI GATC 3 cut(s) 38, 229, 861
DpnII GATC 3 cut(s) 36, 227, 859
Eam1104I CTCTTC 3 cut(s) 26, 729, 850
EarI CTCTTC 3 cut(s) 26, 729, 850
Ecl136II GAGCTC 1 cut(s) 67
Eco130I CCWWGG 2 cut(s) 300, 799
Eco24I GRGCYC 1 cut(s) 69
Eco32I GATATC 1 cut(s) 866
Eco47I GGWCC 1 cut(s) 848
Eco53kI GAGCTC 1 cut(s) 67
Eco57I CTGAAG 2 cut(s) 417, 652
Eco91I GGTNACC 1 cut(s) 560
EcoICRI GAGCTC 1 cut(s) 67
EcoO65I GGTNACC 1 cut(s) 560
EcoRII CCWGG 3 cut(s) 464, 738, 850
EcoRV GATATC 1 cut(s) 866
EcoT14I CCWWGG 2 cut(s) 300, 799
EcoT38I GRGCYC 1 cut(s) 69
ErhI CCWWGG 2 cut(s) 300, 799
FaeI CATG 3 cut(s) 304, 315, 376
FalI AAGNNNNNCTT 2 cut(s) 783, 815
FaqI GGGAC 2 cut(s) 281, 648
FatI CATG 3 cut(s) 300, 311, 372
FauI CCCGC 1 cut(s) 780
FauNDI CATATG 1 cut(s) 424
FokI GGATG 1 cut(s) 698
FriOI GRGCYC 1 cut(s) 69
FspBI CTAG 3 cut(s) 126, 437, 824
HaeIII GGCC 1 cut(s) 28
HapII CCGG 1 cut(s) 308
Hin1II CATG 3 cut(s) 304, 315, 376
HincII GTYRAC 2 cut(s) 237, 317
HindII GTYRAC 2 cut(s) 237, 317
HindIII AAGCTT 2 cut(s) 279, 351
HinfI GANTC 2 cut(s) 419, 470
HpaII CCGG 1 cut(s) 308
HphI GGTGA 3 cut(s) 354, 421, 554
Hpy166II GTNNAC 2 cut(s) 237, 317
Hpy188I TCNGA 3 cut(s) 343, 587, 719
Hpy188III TCNNGA 5 cut(s) 21, 544, 553, 631, 670
Hpy8I GTNNAC 2 cut(s) 237, 317
HpyAV CCTTC 4 cut(s) 18, 209, 392, 676
HpyCH4III ACNGT 1 cut(s) 505
HpyCH4V TGCA 4 cut(s) 4, 143, 178, 495
HpyF10VI GCNNNNNNNGC 3 cut(s) 442, 741, 833
HpyF3I CTNAG 4 cut(s) 47, 119, 716, 885
Hsp92II CATG 3 cut(s) 304, 315, 376
Kzo9I GATC 3 cut(s) 36, 227, 859
LmnI GCTCC 4 cut(s) 72, 310, 519, 587
MaeI CTAG 3 cut(s) 126, 437, 824
MaeIII GTNAC 4 cut(s) 55, 505, 553, 560
MalI GATC 3 cut(s) 38, 229, 861
MboI GATC 3 cut(s) 36, 227, 859
MboII GAAGA 4 cut(s) 43, 86, 716, 867
MflI RGATCY 1 cut(s) 227
MhlI GDGCHC 1 cut(s) 69
MluCI AATT 6 cut(s) 431, 520, 711, 756, 760, 879
MlyI GAGTC 1 cut(s) 479
MnlI CCTC 3 cut(s) 27, 360, 732
MseI TTAA 5 cut(s) 95, 209, 336, 594, 759
MslI CAYNNNNRTG 1 cut(s) 148
MspA1I CMGCKG 1 cut(s) 163
MspI CCGG 1 cut(s) 308
MspR9I CCNGG 3 cut(s) 466, 740, 852
MvaI CCWGG 3 cut(s) 466, 740, 852
MwoI GCNNNNNNNGC 3 cut(s) 442, 741, 833
NcoI CCATGG 1 cut(s) 300
NdeI CATATG 1 cut(s) 424
NdeII GATC 3 cut(s) 36, 227, 859
NlaIII CATG 3 cut(s) 304, 315, 376
NlaIV GGNNCC 3 cut(s) 306, 457, 515
NmuCI GTSAC 2 cut(s) 553, 560
NspI RCATGY 1 cut(s) 315
PfeI GAWTC 1 cut(s) 419
PleI GAGTC 1 cut(s) 478
PpsI GAGTC 1 cut(s) 478
PshBI ATTAAT 1 cut(s) 759
PsiI TTATAA 2 cut(s) 777, 810
Psp124BI GAGCTC 1 cut(s) 69
Psp6I CCWGG 3 cut(s) 464, 738, 850
PspEI GGTNACC 1 cut(s) 560
PspGI CCWGG 3 cut(s) 464, 738, 850
PspN4I GGNNCC 3 cut(s) 306, 457, 515
PspPI GGNCC 1 cut(s) 848
PsuI RGATCY 1 cut(s) 227
RsaI GTAC 3 cut(s) 403, 607, 753
RsaNI GTAC 3 cut(s) 402, 606, 752
RseI CAYNNNNRTG 1 cut(s) 148
SacI GAGCTC 1 cut(s) 69
SaqAI TTAA 5 cut(s) 95, 209, 336, 594, 759
Sau3AI GATC 3 cut(s) 36, 227, 859
Sau96I GGNCC 1 cut(s) 848
SchI GAGTC 1 cut(s) 479
ScrFI CCNGG 3 cut(s) 466, 740, 852
SduI GDGCHC 1 cut(s) 69
SinI GGWCC 1 cut(s) 848
SmiMI CAYNNNNRTG 1 cut(s) 148
Sse9I AATT 6 cut(s) 431, 520, 711, 756, 760, 879
SsiI CCGC 3 cut(s) 163, 787, 846
SspMI CTAG 3 cut(s) 126, 437, 824
SstI GAGCTC 1 cut(s) 69
StyD4I CCNGG 3 cut(s) 464, 738, 850
StyI CCWWGG 2 cut(s) 300, 799
TaaI ACNGT 1 cut(s) 505
TaqI TCGA 2 cut(s) 39, 862
TasI AATT 6 cut(s) 431, 520, 711, 756, 760, 879
TatI WGTACW 1 cut(s) 605
TfiI GAWTC 1 cut(s) 419
Tru1I TTAA 5 cut(s) 95, 209, 336, 594, 759
Tru9I TTAA 5 cut(s) 95, 209, 336, 594, 759
TscAI CASTG 1 cut(s) 490
TseFI GTSAC 2 cut(s) 553, 560
Tsp45I GTSAC 2 cut(s) 553, 560
TspDTI ATGAA 5 cut(s) 363, 411, 543, 702, 722
TspRI CASTG 1 cut(s) 490
VpaK11BI GGWCC 1 cut(s) 848
VspI ATTAAT 1 cut(s) 759
XapI RAATTY 1 cut(s) 711
XceI RCATGY 1 cut(s) 315
XspI CTAG 3 cut(s) 126, 437, 824
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.