Rmu_sc0013931.1_g000008

Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0013931.1
OG0002341
Physical Location & Seq
Reverse (-)
22270 .. 25756
3487 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0013931.1_g000008.1.cds

Sequence Viewer

Length: 2220 bp
atggttactggtgatcggattccggtgaccggtgaccggtcgccggagtccggtcacaggtcgtcggagtcggcgaccggccattggtcaccggagcacagcaagtcaatccgcgcctggttacaaatggacgtcgatcacggtcacggctacggttctcatttggttagaatggaagcggcggacgtcgcctacggatttcggcctcgtgatgtacccgagagactgatatacgatgacgaaagcacaccggaagaaattagcatagatgatgagagtcactggatacagaagcaacttgaactgttgtttggtccattgagcagcgatgacatctccaggtttctgtacatgcaccatgtgcgaaaactggatattccttttattgcaatgtacttgaaagaggactgccttagcttattgaaagatcatcctgaacaacctgaagaagaaaaatctaaagtgaagtggtacaggattctgtgggccgctcaggaattgcacaaaaagtggttgctgtttcagaatcagaaaagggctttgcgattttcctacaataagcgctttgaggaagaatctcgactaggactcatacatgataaggcggctccacagctttttgaatcaattatcaactcactccaagctgcagagtcacagagggaggttgaggatatcaacagcaagtttaacttgcatttccctgcaactgagggtccggctactgttgttatctgtagtgatccaggtgtcagtagagctaaagacttgttacttacggaatatggaagggctttgttcaataaagtctctgtggcaccgccatatcaacggaatgaaactgcaccacccagggtcatggcttgctgttggggccctggggaccctgcaacaactttagtgatgttagattcatgtggggagattctagatgtactttgcaccgggcctctcagctgggagtctcttacctggaccatacccttctttgatgaagctactcaacagcgtatgaattgtgatcaagaacgtattttgaagtttgtgactgatcaccaacctgatgtcactatcataggagcagctaatatgtcttgtcctctcctgagagaacaactgctttgggtgagtgatacaatgatgatgaaacctaacagtagagcaagccccctaaggattgtgtatggggatgaatctctggctcgcctatatgagaattctgagatttcatcggagcagttacctggacaatcaggcattgccaggcgggctgtggctctagggcgttatcttcaaaatccattggcaatggttgccacattgtgtggagctggaagagaaatcctatcttggaaactactcaattctcctgatgagaactatctcaacccggacgagaagtatgcagtgattgaacaggtcatgatagatgtgacaaaccaggttggcctagacataaatttggccataaaccatgaatggttatttgcacctttgcaatttatttctgggcttggacctcaaatggcagcatctctgaagaagtcattggtaaaatctggtaaagtatctactcgaaacgagtttgcaacattacatgggatgggtgcatgggtgtatattaatgcagttggtttcttgcgtgtgcggctgagtgggatgcttgctgctagcagcatcagcagccaattttttgctctgttggatgatacaagaatacatccagatttatactgttttgcagaacaaatggccggagatgtttatggtgacatggatgttctggtgcagagcattagggatctacctagttacctcgagaagcttgacatcgaagcatatgctagaagcagaggattgcattatatgatgcaaacattgtgctgtataagggaagagttaatacaagggttccaagagtggcgtaaaaaatatgaagaactaagtgatgataacatgttctatatgatgaccggtgaaactcgcgacaccctctcggaaggaagcattgtgcaggccacaattcgcagggtgctttccaaaacagcaatttgtactgtgggagctgggttgatttgtttgctctggagagatgactttaaagttgatgggagggaaatttcagacttatcacaagtaatgaaggtgggtgacactatcacttgcaagatcaaatctcttcgaaagaagcaatgggatgtgaaactctgtagtttctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000785 GO:0000988 GO:0000990 GO:0000991 GO:0002637 GO:0002682 GO:0002694 GO:0002697 GO:0002700 GO:0002703 GO:0002706 GO:0002712 GO:0002819 GO:0002822 GO:0002889 GO:0003006 GO:0003674 GO:0003682 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006325 GO:0006338 GO:0006342 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009506 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0010793 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030054 GO:0031056 GO:0031057 GO:0031060 GO:0031061 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031491 GO:0031974 GO:0031981 GO:0032239 GO:0032268 GO:0032269 GO:0032386 GO:0032501 GO:0032502 GO:0032774 GO:0032784 GO:0032786 GO:0032879 GO:0032880 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0033157 GO:0034243 GO:0034641 GO:0034645 GO:0034654 GO:0034728 GO:0035327 GO:0040029 GO:0042393 GO:0042789 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0043954 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045191 GO:0045595 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0046822 GO:0046825 GO:0046831 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050684 GO:0050776 GO:0050789 GO:0050793 GO:0050794 GO:0050864 GO:0050865 GO:0051049 GO:0051052 GO:0051128 GO:0051129 GO:0051147 GO:0051171 GO:0051172 GO:0051173 GO:0051223 GO:0051239 GO:0051246 GO:0051248 GO:0051249 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0055044 GO:0060255 GO:0060341 GO:0061085 GO:0061086 GO:0061458 GO:0065007 GO:0070013 GO:0070201 GO:0070827 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090087 GO:0090304 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902275 GO:1902679 GO:1902680 GO:1903311 GO:1903506 GO:1903507 GO:1903508 GO:1903827 GO:1905268 GO:2000026 GO:2000112 GO:2000113 GO:2000197 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DLD HHH_7 HTH_44 SH2_2 SPT6_acidic YqgF

Protein Analysis

739

Amino Acids

83.81

Weight (kDa)

5.43

Isoelectric Point (pI)

45.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 135, 189
AccB1I GGYRCC 1 cut(s) 817
AccBSI CCGCTC 1 cut(s) 491
AccII CGCG 2 cut(s) 114, 1986
AciI CCGC 8 cut(s) 112, 179, 182, 489, 605, 821, 1267, 1648
AclWI GGATC 2 cut(s) 737, 1809
AcoI YGGCCR 3 cut(s) 79, 1464, 1752
AcsI RAATTY 3 cut(s) 1216, 1459, 2118
AcuI CTGAAG 2 cut(s) 465, 1559
AcyI GRCGYC 2 cut(s) 132, 186
AdeI CACNNNGTG 2 cut(s) 361, 1323
AfaI GTAC 6 cut(s) 216, 350, 395, 473, 936, 2056
AfeI AGCGCT 1 cut(s) 563
AfiI CCNNNNNNNGG 6 cut(s) 29, 36, 43, 50, 57, 84
AflIII ACRYGT 1 cut(s) 1956
AgeI ACCGGT 3 cut(s) 29, 36, 1973
AgsI TTSAA 8 cut(s) 302, 400, 424, 623, 802, 1039, 1295, 1415
AjnI CCWGG 9 cut(s) 116, 338, 745, 851, 877, 971, 1243, 1262, 1440
AjuI GAANNNNNNNTTGG 4 cut(s) 294, 326, 1532, 1564
Alw21I GWGCWC 1 cut(s) 99
Alw26I GTCTC 3 cut(s) 217, 814, 969
AlwI GGATC 2 cut(s) 737, 1809
Ama87I CYCGRG 2 cut(s) 218, 1817
Aor51HI AGCGCT 1 cut(s) 563
AoxI GGCC 9 cut(s) 79, 203, 486, 874, 947, 1447, 1464, 1752, 2016
ApaI GGGCCC 1 cut(s) 878
ApeKI GCWGC 7 cut(s) 324, 647, 1082, 1529, 1667, 1674, 1683
ApoI RAATTY 3 cut(s) 1216, 1459, 2118
AseI ATTAAT 1 cut(s) 1623
AsiGI ACCGGT 3 cut(s) 29, 36, 1973
AspLEI GCGC 2 cut(s) 116, 564
AspS9I GGNCC 9 cut(s) 314, 486, 716, 874, 875, 883, 947, 975, 1517
AsuC2I CCSGG 2 cut(s) 946, 1391
AsuHPI GGTGA 9 cut(s) 23, 37, 44, 81, 1046, 1138, 1781, 1988, 2162
AsuII TTCGAA 1 cut(s) 2182
AsuNHI GCTAGC 1 cut(s) 1670
AvaI CYCGRG 2 cut(s) 218, 1817
AvaII GGWCC 5 cut(s) 314, 716, 883, 975, 1517
AxyI CCTNAGG 1 cut(s) 1172
BaeGI GKGCMC 1 cut(s) 878
BalI TGGCCA 1 cut(s) 1466
BanI GGYRCC 1 cut(s) 817
BanII GRGCYC 1 cut(s) 878
BarI GAAGNNNNNNTAC 2 cut(s) 1887, 1919
BauI CACGAG 1 cut(s) 207
Bbv12I GWGCWC 1 cut(s) 99
BbvI GCAGC 7 cut(s) 336, 634, 1094, 1541, 1654, 1686, 1695
BccI CCATC 2 cut(s) 1597, 2102
BceAI ACGGC 1 cut(s) 163
BcgI CGANNNNNNTGC 4 cut(s) 1385, 1419, 1823, 1857
BciT130I CCWGG 9 cut(s) 118, 340, 747, 853, 879, 973, 1245, 1264, 1442
BciVI GTATCC 1 cut(s) 279
BclI TGATCA 2 cut(s) 1021, 1051
BcnI CCSGG 2 cut(s) 946, 1391
BcoDI GTCTC 3 cut(s) 217, 814, 969
BfaI CTAG 8 cut(s) 584, 929, 1280, 1451, 1671, 1809, 1845, 2218
BfmI CTRYAG 3 cut(s) 648, 736, 2209
BfoI RGCGCY 1 cut(s) 565
BfuI GTATCC 1 cut(s) 279
BglI GCCNNNNNGGC 1 cut(s) 1268
Bme18I GGWCC 5 cut(s) 314, 716, 883, 975, 1517
BmeT110I CYCGRG 2 cut(s) 218, 1817
BmgT120I GGNCC 9 cut(s) 314, 486, 716, 874, 875, 883, 947, 975, 1517
BmiI GGNNCC 8 cut(s) 609, 717, 819, 875, 876, 884, 885, 1913
BmsI GCATC 4 cut(s) 1541, 1650, 1686, 1860
BmtI GCTAGC 1 cut(s) 1674
BpmI CTGGAG 2 cut(s) 322, 2107
Bpu10I CCTNAGC 2 cut(s) 413, 492
Bpu14I TTCGAA 1 cut(s) 2182
BpuMI CCSGG 2 cut(s) 946, 1391
BsaHI GRCGYC 2 cut(s) 132, 186
BsaJI CCNNGG 4 cut(s) 851, 852, 877, 878
BsaWI WCCGGW 7 cut(s) 22, 29, 36, 50, 91, 250, 1973
Bsc4I CCNNNNNNNGG 6 cut(s) 29, 36, 43, 50, 57, 84
Bse118I RCCGGY 4 cut(s) 29, 36, 77, 1973
Bse1I ACTGG 3 cut(s) 13, 287, 375
Bse21I CCTNAGG 1 cut(s) 1172
Bse3DI GCAATG 4 cut(s) 396, 1257, 1314, 2198
BseBI CCWGG 9 cut(s) 118, 340, 747, 853, 879, 973, 1245, 1264, 1442
BseDI CCNNGG 4 cut(s) 851, 852, 877, 878
BseGI GGATG 8 cut(s) 430, 1195, 1608, 1665, 1711, 1720, 1783, 2203
BseLI CCNNNNNNNGG 6 cut(s) 29, 36, 43, 50, 57, 84
BseMI GCAATG 4 cut(s) 396, 1257, 1314, 2198
BseMII CTCAG 6 cut(s) 506, 702, 967, 1097, 1212, 1643
BseNI ACTGG 3 cut(s) 13, 287, 375
BseSI GKGCMC 1 cut(s) 878
BseXI GCAGC 7 cut(s) 336, 634, 1094, 1541, 1654, 1686, 1695
BseYI CCCAGC 2 cut(s) 957, 2066
BsgI GTGCAG 3 cut(s) 828, 1808, 2033
Bsh1236I CGCG 2 cut(s) 114, 1986
Bsh1285I CGRYCG 2 cut(s) 41, 78
BshFI GGCC 9 cut(s) 81, 205, 488, 876, 949, 1449, 1466, 1754, 2018
BshNI GGYRCC 1 cut(s) 817
BshTI ACCGGT 3 cut(s) 29, 36, 1973
BsiEI CGRYCG 2 cut(s) 41, 78
BsiHKAI GWGCWC 1 cut(s) 99
BsiHKCI CYCGRG 2 cut(s) 218, 1817
BslFI GGGAC 1 cut(s) 896
BslI CCNNNNNNNGG 6 cut(s) 29, 36, 43, 50, 57, 84
BsmAI GTCTC 3 cut(s) 217, 814, 969
BsmFI GGGAC 1 cut(s) 896
BsnI GGCC 9 cut(s) 81, 205, 488, 876, 949, 1449, 1466, 1754, 2018
BsoBI CYCGRG 2 cut(s) 218, 1817
Bsp119I TTCGAA 1 cut(s) 2182
Bsp120I GGGCCC 1 cut(s) 874
Bsp1286I GDGCHC 2 cut(s) 99, 878
Bsp1407I TGTACA 1 cut(s) 348
Bsp143I GATC 8 cut(s) 13, 136, 427, 742, 1021, 1051, 1801, 2169
Bsp68I TCGCGA 1 cut(s) 1986
BspACI CCGC 8 cut(s) 112, 179, 182, 489, 605, 821, 1267, 1648
BspANI GGCC 9 cut(s) 81, 205, 488, 876, 949, 1449, 1466, 1754, 2018
BspCNI CTCAG 6 cut(s) 505, 703, 966, 1098, 1213, 1644
BspFNI CGCG 2 cut(s) 114, 1986
BspHI TCATGA 1 cut(s) 1422
BspLI GGNNCC 8 cut(s) 609, 717, 819, 875, 876, 884, 885, 1913
BspMAI CTGCAG 1 cut(s) 652
BspOI GCTAGC 1 cut(s) 1674
BspPI GGATC 2 cut(s) 737, 1809
BspT104I TTCGAA 1 cut(s) 2182
BspT107I GGYRCC 1 cut(s) 817
BsrBI CCGCTC 1 cut(s) 491
BsrDI GCAATG 4 cut(s) 396, 1257, 1314, 2198
BsrFI RCCGGY 4 cut(s) 29, 36, 77, 1973
BsrGI TGTACA 1 cut(s) 348
BsrI ACTGG 3 cut(s) 13, 287, 375
BssAI RCCGGY 4 cut(s) 29, 36, 77, 1973
BssECI CCNNGG 4 cut(s) 851, 852, 877, 878
BssMI GATC 8 cut(s) 13, 136, 427, 742, 1021, 1051, 1801, 2169
BssNI GRCGYC 2 cut(s) 132, 186
BssSI CACGAG 1 cut(s) 207
Bst2BI CACGAG 1 cut(s) 207
Bst2UI CCWGG 9 cut(s) 118, 340, 747, 853, 879, 973, 1245, 1264, 1442
Bst4CI ACNGT 7 cut(s) 143, 155, 306, 727, 1157, 1736, 2059
Bst6I CTCTTC 3 cut(s) 1330, 1890, 2184
BstACI GRCGYC 2 cut(s) 132, 186
BstAPI GCANNNNNTGC 2 cut(s) 361, 1313
BstAUI TGTACA 1 cut(s) 348
BstBI TTCGAA 1 cut(s) 2182
BstC8I GCNNGC 7 cut(s) 865, 1165, 1204, 1269, 1665, 1672, 2016
BstDEI CTNAG 9 cut(s) 413, 492, 711, 953, 1106, 1172, 1221, 1652, 1943
BstEII GGTNACC 3 cut(s) 25, 32, 87
BstF5I GGATG 8 cut(s) 430, 1195, 1608, 1665, 1711, 1720, 1783, 2203
BstFNI CGCG 2 cut(s) 114, 1986
BstH2I RGCGCY 1 cut(s) 565
BstHHI GCGC 2 cut(s) 116, 564
BstKTI GATC 8 cut(s) 16, 139, 430, 745, 1024, 1054, 1804, 2172
BstMAI GTCTC 3 cut(s) 217, 814, 969
BstMBI GATC 8 cut(s) 13, 136, 427, 742, 1021, 1051, 1801, 2169
BstMCI CGRYCG 2 cut(s) 41, 78
BstMWI GCNNNNNNNGC 8 cut(s) 188, 361, 873, 1268, 1313, 1648, 1680, 1683
BstNI CCWGG 9 cut(s) 118, 340, 747, 853, 879, 973, 1245, 1264, 1442
BstNSI RCATGY 2 cut(s) 355, 1960
BstPI GGTNACC 3 cut(s) 25, 32, 87
BstSFI CTRYAG 3 cut(s) 648, 736, 2209
BstSLI GKGCMC 1 cut(s) 878
BstUI CGCG 2 cut(s) 114, 1986
BstV1I GCAGC 7 cut(s) 336, 634, 1094, 1541, 1654, 1686, 1695
BstX2I RGATCY 1 cut(s) 1801
BstXI CCANNNNNNTGG 1 cut(s) 859
BstYI RGATCY 1 cut(s) 1801
Bsu36I CCTNAGG 1 cut(s) 1172
BsuI GTATCC 1 cut(s) 279
BsuRI GGCC 9 cut(s) 81, 205, 488, 876, 949, 1449, 1466, 1754, 2018
BtgZI GCGATG 1 cut(s) 342
BtsCI GGATG 8 cut(s) 430, 1195, 1608, 1665, 1711, 1720, 1783, 2203
BtsI GCAGTG 1 cut(s) 1413
BtsIMutI CAGTG 2 cut(s) 280, 1413
BtuMI TCGCGA 1 cut(s) 1986
Cac8I GCNNGC 7 cut(s) 865, 1165, 1204, 1269, 1665, 1672, 2016
CciI TCATGA 1 cut(s) 1422
CfoI GCGC 2 cut(s) 116, 564
Cfr10I RCCGGY 4 cut(s) 29, 36, 77, 1973
Cfr13I GGNCC 9 cut(s) 314, 486, 716, 874, 875, 883, 947, 975, 1517
CsiI ACCWGGT 1 cut(s) 1440
Csp6I GTAC 6 cut(s) 215, 349, 394, 472, 935, 2055
CspAI ACCGGT 3 cut(s) 29, 36, 1973
CviQI GTAC 6 cut(s) 215, 349, 394, 472, 935, 2055
DdeI CTNAG 9 cut(s) 413, 492, 711, 953, 1106, 1172, 1221, 1652, 1943
DpnI GATC 8 cut(s) 15, 138, 429, 744, 1023, 1053, 1803, 2171
DpnII GATC 8 cut(s) 13, 136, 427, 742, 1021, 1051, 1801, 2169
DraI TTTAAA 1 cut(s) 2101
DraIII CACNNNGTG 2 cut(s) 361, 1323
EaeI YGGCCR 3 cut(s) 79, 1464, 1752
Eam1104I CTCTTC 3 cut(s) 1330, 1890, 2184
EarI CTCTTC 3 cut(s) 1330, 1890, 2184
EciI GGCGGA 1 cut(s) 197
Eco24I GRGCYC 1 cut(s) 878
Eco32I GATATC 1 cut(s) 676
Eco47I GGWCC 5 cut(s) 314, 716, 883, 975, 1517
Eco47III AGCGCT 1 cut(s) 563
Eco57I CTGAAG 2 cut(s) 465, 1559
Eco81I CCTNAGG 1 cut(s) 1172
Eco88I CYCGRG 2 cut(s) 218, 1817
Eco91I GGTNACC 3 cut(s) 25, 32, 87
EcoO109I RGGNCCY 3 cut(s) 874, 875, 883
EcoO65I GGTNACC 3 cut(s) 25, 32, 87
EcoRI GAATTC 1 cut(s) 1216
EcoRII CCWGG 9 cut(s) 116, 338, 745, 851, 877, 971, 1243, 1262, 1440
EcoRV GATATC 1 cut(s) 676
EcoT38I GRGCYC 1 cut(s) 878
FalI AAGNNNNNCTT 2 cut(s) 677, 709
FaqI GGGAC 1 cut(s) 896
FauI CCCGC 1 cut(s) 1260
FauNDI CATATG 1 cut(s) 1840
FbaI TGATCA 2 cut(s) 1021, 1051
FokI GGATG 8 cut(s) 417, 1202, 1615, 1672, 1707, 1718, 1790, 2210
FriOI GRGCYC 1 cut(s) 878
FspBI CTAG 8 cut(s) 584, 929, 1280, 1451, 1671, 1809, 1845, 2218
GlaI GCGC 2 cut(s) 115, 563
GsaI CCCAGC 2 cut(s) 961, 2070
GsuI CTGGAG 2 cut(s) 322, 2107
HaeII RGCGCY 1 cut(s) 565
HaeIII GGCC 9 cut(s) 81, 205, 488, 876, 949, 1449, 1466, 1754, 2018
HhaI GCGC 2 cut(s) 116, 564
Hin1I GRCGYC 2 cut(s) 132, 186
Hin6I GCGC 2 cut(s) 114, 562
HinP1I GCGC 2 cut(s) 114, 562
HindIII AAGCTT 1 cut(s) 1823
HphI GGTGA 9 cut(s) 23, 37, 44, 81, 1046, 1138, 1781, 1988, 2162
Hpy188I TCNGA 9 cut(s) 18, 67, 525, 531, 1222, 1234, 1539, 1999, 2125
Hpy99I CGWCG 3 cut(s) 67, 137, 191
HpyAV CCTTC 4 cut(s) 783, 994, 1994, 2137
HpyCH4III ACNGT 7 cut(s) 143, 155, 306, 727, 1157, 1736, 2059
HpyCH4IV ACGT 3 cut(s) 132, 186, 1030
HpyF10VI GCNNNNNNNGC 8 cut(s) 188, 361, 873, 1268, 1313, 1648, 1680, 1683
HpyF3I CTNAG 9 cut(s) 413, 492, 711, 953, 1106, 1172, 1221, 1652, 1943
HpySE526I ACGT 3 cut(s) 132, 186, 1030
Hsp92I GRCGYC 2 cut(s) 132, 186
HspAI GCGC 2 cut(s) 114, 562
KflI GGGWCCC 1 cut(s) 883
Ksp22I TGATCA 2 cut(s) 1021, 1051
Kzo9I GATC 8 cut(s) 13, 136, 427, 742, 1021, 1051, 1801, 2169
LmnI GCTCC 6 cut(s) 94, 613, 1079, 1234, 1328, 2063
Lsp1109I GCAGC 7 cut(s) 336, 634, 1094, 1541, 1654, 1686, 1695
LweI GCATC 4 cut(s) 1541, 1650, 1686, 1860
MabI ACCWGGT 1 cut(s) 1440
MaeI CTAG 8 cut(s) 584, 929, 1280, 1451, 1671, 1809, 1845, 2218
MaeII ACGT 3 cut(s) 132, 186, 1030
MalI GATC 8 cut(s) 15, 138, 429, 744, 1023, 1053, 1803, 2171
MbiI CCGCTC 1 cut(s) 491
MboI GATC 8 cut(s) 13, 136, 427, 742, 1021, 1051, 1801, 2169
MflI RGATCY 1 cut(s) 1801
MhlI GDGCHC 2 cut(s) 99, 878
MlsI TGGCCA 1 cut(s) 1466
MluNI TGGCCA 1 cut(s) 1466
MlyI GAGTC 6 cut(s) 56, 77, 286, 582, 662, 971
MmeI TCCRAC 2 cut(s) 45, 1683
Mox20I TGGCCA 1 cut(s) 1466
MscI TGGCCA 1 cut(s) 1466
MseI TTAA 4 cut(s) 690, 1623, 1901, 2100
Msp20I TGGCCA 1 cut(s) 1466
MspA1I CMGCKG 1 cut(s) 957
MvaI CCWGG 9 cut(s) 118, 340, 747, 853, 879, 973, 1245, 1264, 1442
MvnI CGCG 2 cut(s) 114, 1986
MwoI GCNNNNNNNGC 8 cut(s) 188, 361, 873, 1268, 1313, 1648, 1680, 1683
NciI CCSGG 2 cut(s) 946, 1391
NdeI CATATG 1 cut(s) 1840
NdeII GATC 8 cut(s) 13, 136, 427, 742, 1021, 1051, 1801, 2169
NheI GCTAGC 1 cut(s) 1670
NlaIV GGNNCC 8 cut(s) 609, 717, 819, 875, 876, 884, 885, 1913
NruI TCGCGA 1 cut(s) 1986
NspI RCATGY 2 cut(s) 355, 1960
NspV TTCGAA 1 cut(s) 2182
PaeR7I CTCGAG 1 cut(s) 1817
PagI TCATGA 1 cut(s) 1422
PasI CCCWGGG 2 cut(s) 852, 878
PciI ACATGT 1 cut(s) 1956
PcsI WCGNNNNNNNCGW 1 cut(s) 71
PfeI GAWTC 8 cut(s) 19, 478, 526, 575, 623, 911, 925, 1193
PinAI ACCGGT 3 cut(s) 29, 36, 1973
PleI GAGTC 6 cut(s) 55, 76, 285, 582, 661, 970
PpsI GAGTC 6 cut(s) 55, 76, 285, 582, 661, 970
PpuMI RGGWCCY 1 cut(s) 883
PscI ACATGT 1 cut(s) 1956
PshBI ATTAAT 1 cut(s) 1623
Psp5II RGGWCCY 1 cut(s) 883
Psp6I CCWGG 9 cut(s) 116, 338, 745, 851, 877, 971, 1243, 1262, 1440
PspEI GGTNACC 3 cut(s) 25, 32, 87
PspFI CCCAGC 2 cut(s) 957, 2066
PspGI CCWGG 9 cut(s) 116, 338, 745, 851, 877, 971, 1243, 1262, 1440
PspN4I GGNNCC 8 cut(s) 609, 717, 819, 875, 876, 884, 885, 1913
PspOMI GGGCCC 1 cut(s) 874
PspPI GGNCC 9 cut(s) 314, 486, 716, 874, 875, 883, 947, 975, 1517
PspPPI RGGWCCY 1 cut(s) 883
PstI CTGCAG 1 cut(s) 652
PsuI RGATCY 1 cut(s) 1801
PvuII CAGCTG 1 cut(s) 957
RruI TCGCGA 1 cut(s) 1986
RsaI GTAC 6 cut(s) 216, 350, 395, 473, 936, 2056
RsaNI GTAC 6 cut(s) 215, 349, 394, 472, 935, 2055
SaqAI TTAA 4 cut(s) 690, 1623, 1901, 2100
Sau3AI GATC 8 cut(s) 13, 136, 427, 742, 1021, 1051, 1801, 2169
Sau96I GGNCC 9 cut(s) 314, 486, 716, 874, 875, 883, 947, 975, 1517
SchI GAGTC 6 cut(s) 56, 77, 286, 582, 662, 971
SduI GDGCHC 2 cut(s) 99, 878
SexAI ACCWGGT 1 cut(s) 1440
SfaNI GCATC 4 cut(s) 1541, 1650, 1686, 1860
SfcI CTRYAG 3 cut(s) 648, 736, 2209
Sfr274I CTCGAG 1 cut(s) 1817
SfuI TTCGAA 1 cut(s) 2182
SinI GGWCC 5 cut(s) 314, 716, 883, 975, 1517
SlaI CTCGAG 1 cut(s) 1817
SmlI CTYRAG 1 cut(s) 1817
SmoI CTYRAG 1 cut(s) 1817
SsiI CCGC 8 cut(s) 112, 179, 182, 489, 605, 821, 1267, 1648
SspMI CTAG 8 cut(s) 584, 929, 1280, 1451, 1671, 1809, 1845, 2218
TaaI ACNGT 7 cut(s) 143, 155, 306, 727, 1157, 1736, 2059
TaiI ACGT 3 cut(s) 135, 189, 1033
TaqI TCGA 6 cut(s) 135, 580, 1576, 1818, 1833, 2182
TatI WGTACW 4 cut(s) 348, 393, 934, 2054
TauI GCSGC 4 cut(s) 182, 491, 608, 1651
TfiI GAWTC 8 cut(s) 19, 478, 526, 575, 623, 911, 925, 1193
Tru1I TTAA 4 cut(s) 690, 1623, 1901, 2100
Tru9I TTAA 4 cut(s) 690, 1623, 1901, 2100
TscAI CASTG 2 cut(s) 287, 1413
TseI GCWGC 7 cut(s) 324, 647, 1082, 1529, 1667, 1674, 1683
TspGWI ACGGA 3 cut(s) 210, 794, 847
TspRI CASTG 2 cut(s) 287, 1413
VpaK11BI GGWCC 5 cut(s) 314, 716, 883, 975, 1517
VspI ATTAAT 1 cut(s) 1623
XapI RAATTY 3 cut(s) 1216, 1459, 2118
XbaI TCTAGA 1 cut(s) 928
XceI RCATGY 2 cut(s) 355, 1960
XcmI CCANNNNNNNNNTGG 1 cut(s) 1270
XhoI CTCGAG 1 cut(s) 1817
XspI CTAG 8 cut(s) 584, 929, 1280, 1451, 1671, 1809, 1845, 2218
ZraI GACGTC 2 cut(s) 133, 187
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.