Rh2BG033300

Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0002341
Physical Location & Seq
Reverse (-)
2307562 .. 2308959
1398 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG033300.1

Sequence Viewer

Length: 1398 bp
ATGGCACCGCCATATAAACGGAACCAAACTGCACCACCTAGGGTCATGGCTTGCTGTTGGGGTCCCGGGGACCCTGCAACCACTTTAGTGATGTTGGATTCATGTGGGGAGCTGCTAGATGTGCTTTGCATAGGGACTATCAGCTGGGAGAATCTCACCTGGACCGTACCATTCTTTGATAAACCTACTAGACTGCGTATGGAAAATGATGATAAACGTATTCTGAAGTTCGTGAATGATCACGAACCTGATCTTGCTATCATAGGAGCGACTAATATGTCTTGTGATATGCTGAAATTACAACTTCTGGGAATTGAATCATTACAGGTACCCGAGAAAATGATCCCCCTAAGGGTTGTATATGGGGATGAAACTTTGGCTTGCCTGTATGAAAATTCTCAGATTTCGGCTGATCAGCTACCTGGACAATCAGGCATGGTCAGGCGGGCTGTGGCTCTTGGGCGTTATCTTCAAAATCCACTGGCAATGGTTGCCACACTTTGTGGACCGGGACGAGAGATCTTATCTTGGAAACCACTCACTTCTCCTTTCGATAACTTTCTCACCCCAGATGAGAAGTACGCGATGATTGAACAGGTCATGGTAGATGTTACAAACCAGGTTGGCCTTGACATAACTTTGGCTACAAGCCATGAATGGTTATTTGCACCTTTGCAATTCATTTCTGGACTTGGACCTAGAAAGGCAGCATCTCTGCAGCGGTCATTGGTAAGAAGTGGTGAAATACTTGCTCGAAGGGAGTTGGCTACGTTGCATGGGCTTGGTAGAAGGGTGTATCTAAATGCAGTTGGTTTCTTGCGTATTCAGCAACATGGGTTAGCTGCTAGCAGCACCAGCAGCCAATTTAATGCTCTGTTGGATGATACAAGAATCCATCCAGAATCCTATTTGCTTGCACAAGAAATGGCCAAAGACGTTTATGATGATAAGGATGCAATGGAGCTGCAGCGCATTAGGGATCAACCTAGTTACCTCGAGAAGCTTGACGTTGAAGCATATGCTAAAAGCAAAAAACTTGAGAATAAGATGCAAACATTGTGCGGCATAAGGAGAGAATTAATACAGGGGTTTCAGGATGAGCGTAAAACATATGAAGAACTAGATGAAGATGACATGTTCTATACAATGACAGGTGAGACTCGCACCACACTATCTCAAGGAAGCATTGTGCAGGCCATAGTTCGAAGGGCTCTACCCAAAACAACAATTTGTACTGTGGGAGCTGGATTGATTTGTACACTTAAGAGAGAAGATTTTACAGTTAATGGGAGGGAAATTTCAGACTTATCTCAGGTACTGAAGGTGGGTGACATTATCACTTGCAAAATCAAACGCCTTCGAAAGAAGCGATTGAATGCGGAACTTTGTAGTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000785 GO:0000988 GO:0000990 GO:0000991 GO:0002637 GO:0002682 GO:0002694 GO:0002697 GO:0002700 GO:0002703 GO:0002706 GO:0002712 GO:0002819 GO:0002822 GO:0002889 GO:0003006 GO:0003674 GO:0003682 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006325 GO:0006338 GO:0006342 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009506 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0010793 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030054 GO:0031056 GO:0031057 GO:0031060 GO:0031061 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031491 GO:0031974 GO:0031981 GO:0032239 GO:0032268 GO:0032269 GO:0032386 GO:0032501 GO:0032502 GO:0032774 GO:0032784 GO:0032786 GO:0032879 GO:0032880 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0033157 GO:0034243 GO:0034641 GO:0034645 GO:0034654 GO:0034728 GO:0035327 GO:0040029 GO:0042393 GO:0042789 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0043954 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045191 GO:0045595 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0046822 GO:0046825 GO:0046831 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050684 GO:0050776 GO:0050789 GO:0050793 GO:0050794 GO:0050864 GO:0050865 GO:0051049 GO:0051052 GO:0051128 GO:0051129 GO:0051147 GO:0051171 GO:0051172 GO:0051173 GO:0051223 GO:0051239 GO:0051246 GO:0051248 GO:0051249 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0055044 GO:0060255 GO:0060341 GO:0061085 GO:0061086 GO:0061458 GO:0065007 GO:0070013 GO:0070201 GO:0070827 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090087 GO:0090304 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902275 GO:1902679 GO:1902680 GO:1903311 GO:1903506 GO:1903507 GO:1903508 GO:1903827 GO:1905268 GO:2000026 GO:2000112 GO:2000113 GO:2000197 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DLD HHH_7 HTH_44 SH2_2 SPT6_acidic YqgF

Protein Analysis

465

Amino Acids

52.23

Weight (kDa)

6.09

Isoelectric Point (pI)

47.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YqgF PF14639 14 - 168 2e-13 Holliday-junction resolvase-like of SPT6
HHH_7 PF14635 182 - 275 8.7e-18 Helix-hairpin-helix motif
HHH_9 PF17674 293 - 368 1e-07 HHH domain
Spt6_S1 PF21710 379 - 462 2.1e-08 Spt6, S1/OB domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 277
Acc65I GGTACC 1 cut(s) 328
AccB1I GGYRCC 2 cut(s) 4, 328
AccII CGCG 1 cut(s) 584
AciI CCGC 5 cut(s) 8, 445, 721, 1062, 1379
AclWI GGATC 2 cut(s) 337, 987
AcoI YGGCCR 1 cut(s) 927
AcsI RAATTY 2 cut(s) 394, 1296
AcuI CTGAAG 2 cut(s) 245, 1340
AdeI CACNNNGTG 1 cut(s) 503
AfaI GTAC 6 cut(s) 168, 330, 581, 1234, 1258, 1317
AfiI CCNNNNNNNGG 1 cut(s) 352
AflII CTTAAG 1 cut(s) 1262
AflIII ACRYGT 1 cut(s) 1134
AgsI TTSAA 5 cut(s) 317, 473, 593, 1013, 1375
AjnI CCWGG 3 cut(s) 158, 421, 618
AleI CACNNNNGTG 1 cut(s) 86
AluBI AGCT 7 cut(s) 112, 144, 418, 842, 964, 1003, 1244
AluI AGCT 7 cut(s) 112, 144, 418, 842, 964, 1003, 1244
Alw26I GTCTC 1 cut(s) 1151
AlwI GGATC 2 cut(s) 337, 987
AlwNI CAGNNNCTG 1 cut(s) 1318
Ama87I CYCGRG 3 cut(s) 65, 332, 995
AoxI GGCC 3 cut(s) 625, 927, 1194
ApeKI GCWGC 8 cut(s) 112, 707, 718, 842, 849, 858, 964, 967
ApoI RAATTY 2 cut(s) 394, 1296
AseI ATTAAT 1 cut(s) 1079
Asp718I GGTACC 1 cut(s) 328
AspA2I CCTAGG 1 cut(s) 38
AspLEI GCGC 1 cut(s) 972
AspS9I GGNCC 5 cut(s) 62, 70, 162, 506, 695
AsuC2I CCSGG 3 cut(s) 66, 67, 510
AsuHPI GGTGA 5 cut(s) 148, 556, 752, 1166, 1340
AsuII TTCGAA 2 cut(s) 1204, 1360
AsuNHI GCTAGC 1 cut(s) 845
AvaI CYCGRG 3 cut(s) 65, 332, 995
AvaII GGWCC 5 cut(s) 62, 70, 162, 506, 695
AvrII CCTAGG 1 cut(s) 38
AxyI CCTNAGG 1 cut(s) 350
BalI TGGCCA 1 cut(s) 929
BanI GGYRCC 2 cut(s) 4, 328
BanII GRGCYC 1 cut(s) 1213
BbvI GCAGC 8 cut(s) 99, 719, 730, 829, 861, 870, 951, 979
BccI CCATC 1 cut(s) 903
BciT130I CCWGG 3 cut(s) 160, 423, 620
BclI TGATCA 2 cut(s) 238, 412
BcnI CCSGG 3 cut(s) 66, 67, 510
BcoDI GTCTC 1 cut(s) 1151
BfaI CTAG 7 cut(s) 39, 116, 189, 699, 846, 987, 1121
BfmI CTRYAG 2 cut(s) 716, 965
BfrI CTTAAG 1 cut(s) 1262
BglII AGATCT 1 cut(s) 519
BisI GCNGC 9 cut(s) 113, 708, 719, 843, 850, 859, 965, 968, 1063
BlnI CCTAGG 1 cut(s) 38
BlsI GCNGC 9 cut(s) 114, 709, 720, 844, 851, 860, 966, 969, 1064
Bme1390I CCNGG 6 cut(s) 66, 67, 160, 423, 510, 620
Bme18I GGWCC 5 cut(s) 62, 70, 162, 506, 695
BmeT110I CYCGRG 3 cut(s) 65, 332, 995
BmgT120I GGNCC 5 cut(s) 62, 70, 162, 506, 695
BmiI GGNNCC 7 cut(s) 6, 23, 63, 64, 71, 72, 330
BmrFI CCNGG 6 cut(s) 66, 67, 160, 423, 510, 620
BmsI GCATC 3 cut(s) 719, 943, 1038
BmtI GCTAGC 1 cut(s) 849
Bpu14I TTCGAA 2 cut(s) 1204, 1360
BpuEI CTTGAG 2 cut(s) 1058, 1161
BpuMI CCSGG 3 cut(s) 66, 67, 510
BsaJI CCNNGG 3 cut(s) 38, 65, 66
Bsc4I CCNNNNNNNGG 1 cut(s) 352
Bse1I ACTGG 1 cut(s) 486
Bse21I CCTNAGG 1 cut(s) 350
Bse3DI GCAATG 2 cut(s) 492, 963
BseBI CCWGG 3 cut(s) 160, 423, 620
BseDI CCNNGG 3 cut(s) 38, 65, 66
BseGI GGATG 5 cut(s) 373, 886, 895, 958, 1102
BseLI CCNNNNNNNGG 1 cut(s) 352
BseMI GCAATG 2 cut(s) 492, 963
BseMII CTCAG 2 cut(s) 413, 1325
BseNI ACTGG 1 cut(s) 486
BseXI GCAGC 8 cut(s) 99, 719, 730, 829, 861, 870, 951, 979
BseYI CCCAGC 1 cut(s) 144
BsgI GTGCAG 2 cut(s) 15, 1211
Bsh1236I CGCG 1 cut(s) 584
BshFI GGCC 3 cut(s) 627, 929, 1196
BshNI GGYRCC 2 cut(s) 4, 328
BsiHKCI CYCGRG 3 cut(s) 65, 332, 995
BsiSI CCGG 2 cut(s) 66, 509
BslFI GGGAC 4 cut(s) 48, 83, 148, 525
BslI CCNNNNNNNGG 1 cut(s) 352
BsmAI GTCTC 1 cut(s) 1151
BsmFI GGGAC 4 cut(s) 48, 83, 148, 525
BsmI GAATGC 1 cut(s) 1381
BsnI GGCC 3 cut(s) 627, 929, 1196
BsoBI CYCGRG 3 cut(s) 65, 332, 995
Bsp119I TTCGAA 2 cut(s) 1204, 1360
Bsp1286I GDGCHC 1 cut(s) 1213
Bsp1407I TGTACA 1 cut(s) 1256
Bsp143I GATC 6 cut(s) 238, 250, 342, 412, 519, 979
BspACI CCGC 5 cut(s) 8, 445, 721, 1062, 1379
BspANI GGCC 3 cut(s) 627, 929, 1196
BspCNI CTCAG 2 cut(s) 412, 1324
BspFNI CGCG 1 cut(s) 584
BspLI GGNNCC 7 cut(s) 6, 23, 63, 64, 71, 72, 330
BspMAI CTGCAG 2 cut(s) 720, 969
BspOI GCTAGC 1 cut(s) 849
BspPI GGATC 2 cut(s) 337, 987
BspT104I TTCGAA 2 cut(s) 1204, 1360
BspT107I GGYRCC 2 cut(s) 4, 328
BspTI CTTAAG 1 cut(s) 1262
BsrDI GCAATG 2 cut(s) 492, 963
BsrGI TGTACA 1 cut(s) 1256
BsrI ACTGG 1 cut(s) 486
BssECI CCNNGG 3 cut(s) 38, 65, 66
BssMI GATC 6 cut(s) 238, 250, 342, 412, 519, 979
BssT1I CCWWGG 1 cut(s) 38
Bst2UI CCWGG 3 cut(s) 160, 423, 620
Bst4CI ACNGT 3 cut(s) 166, 1237, 1282
BstAFI CTTAAG 1 cut(s) 1262
BstAPI GCANNNNNTGC 1 cut(s) 491
BstAUI TGTACA 1 cut(s) 1256
BstBI TTCGAA 2 cut(s) 1204, 1360
BstC8I GCNNGC 6 cut(s) 52, 382, 447, 847, 915, 1194
BstDEI CTNAG 3 cut(s) 350, 399, 1311
BstF5I GGATG 5 cut(s) 373, 886, 895, 958, 1102
BstFNI CGCG 1 cut(s) 584
BstHHI GCGC 1 cut(s) 972
BstKTI GATC 6 cut(s) 241, 253, 345, 415, 522, 982
BstMAI GTCTC 1 cut(s) 1151
BstMBI GATC 6 cut(s) 238, 250, 342, 412, 519, 979
BstMWI GCNNNNNNNGC 5 cut(s) 121, 491, 826, 855, 858
BstNI CCWGG 3 cut(s) 160, 423, 620
BstNSI RCATGY 1 cut(s) 1138
BstSCI CCNGG 6 cut(s) 64, 65, 158, 421, 508, 618
BstSFI CTRYAG 2 cut(s) 716, 965
BstUI CGCG 1 cut(s) 584
BstV1I GCAGC 8 cut(s) 99, 719, 730, 829, 861, 870, 951, 979
BstX2I RGATCY 1 cut(s) 519
BstYI RGATCY 1 cut(s) 519
Bsu36I CCTNAGG 1 cut(s) 350
BsuRI GGCC 3 cut(s) 627, 929, 1196
BtgZI GCGATG 1 cut(s) 599
BtsCI GGATG 5 cut(s) 373, 886, 895, 958, 1102
BtsIMutI CAGTG 1 cut(s) 479
Cac8I GCNNGC 6 cut(s) 52, 382, 447, 847, 915, 1194
CaiI CAGNNNCTG 1 cut(s) 1318
CfoI GCGC 1 cut(s) 972
Cfr13I GGNCC 5 cut(s) 62, 70, 162, 506, 695
Cfr9I CCCGGG 1 cut(s) 65
CsiI ACCWGGT 1 cut(s) 618
Csp6I GTAC 6 cut(s) 167, 329, 580, 1233, 1257, 1316
CviAII CATG 8 cut(s) 46, 102, 436, 601, 653, 776, 833, 1135
CviQI GTAC 6 cut(s) 167, 329, 580, 1233, 1257, 1316
DdeI CTNAG 3 cut(s) 350, 399, 1311
DpnI GATC 6 cut(s) 240, 252, 344, 414, 521, 981
DpnII GATC 6 cut(s) 238, 250, 342, 412, 519, 979
DraIII CACNNNGTG 1 cut(s) 503
DrdI GACNNNNNNGTC 1 cut(s) 277
DseDI GACNNNNNNGTC 1 cut(s) 277
EaeI YGGCCR 1 cut(s) 927
Eco130I CCWWGG 1 cut(s) 38
Eco24I GRGCYC 1 cut(s) 1213
Eco47I GGWCC 5 cut(s) 62, 70, 162, 506, 695
Eco57I CTGAAG 2 cut(s) 245, 1340
Eco81I CCTNAGG 1 cut(s) 350
Eco88I CYCGRG 3 cut(s) 65, 332, 995
EcoO109I RGGNCCY 2 cut(s) 62, 70
EcoRII CCWGG 3 cut(s) 158, 421, 618
EcoT14I CCWWGG 1 cut(s) 38
EcoT38I GRGCYC 1 cut(s) 1213
ErhI CCWWGG 1 cut(s) 38
FaeI CATG 8 cut(s) 49, 105, 439, 604, 656, 779, 836, 1138
FaqI GGGAC 4 cut(s) 48, 83, 148, 525
FatI CATG 8 cut(s) 45, 101, 435, 600, 652, 775, 832, 1134
FauI CCCGC 1 cut(s) 438
FauNDI CATATG 2 cut(s) 1018, 1111
FbaI TGATCA 2 cut(s) 238, 412
Fnu4HI GCNGC 9 cut(s) 113, 708, 719, 843, 850, 859, 965, 968, 1063
FokI GGATG 5 cut(s) 380, 882, 893, 965, 1109
FriOI GRGCYC 1 cut(s) 1213
Fsp4HI GCNGC 9 cut(s) 113, 708, 719, 843, 850, 859, 965, 968, 1063
FspBI CTAG 7 cut(s) 39, 116, 189, 699, 846, 987, 1121
GlaI GCGC 1 cut(s) 971
GluI GCNGC 9 cut(s) 113, 708, 719, 843, 850, 859, 965, 968, 1063
GsaI CCCAGC 1 cut(s) 148
HaeIII GGCC 3 cut(s) 627, 929, 1196
HapII CCGG 2 cut(s) 66, 509
HhaI GCGC 1 cut(s) 972
Hin1II CATG 8 cut(s) 49, 105, 439, 604, 656, 779, 836, 1138
Hin6I GCGC 1 cut(s) 970
HinP1I GCGC 1 cut(s) 970
HindIII AAGCTT 1 cut(s) 1001
HinfI GANTC 6 cut(s) 98, 151, 317, 891, 902, 1159
HpaII CCGG 2 cut(s) 66, 509
HphI GGTGA 5 cut(s) 148, 556, 752, 1166, 1340
Hpy166II GTNNAC 2 cut(s) 506, 1259
Hpy188I TCNGA 3 cut(s) 225, 402, 1303
Hpy188III TCNNGA 6 cut(s) 232, 242, 687, 899, 997, 1094
Hpy8I GTNNAC 2 cut(s) 506, 1259
HpyAV CCTTC 5 cut(s) 750, 783, 1200, 1315, 1367
HpyCH4III ACNGT 3 cut(s) 166, 1237, 1282
HpyCH4IV ACGT 4 cut(s) 217, 770, 936, 1008
HpyF10VI GCNNNNNNNGC 5 cut(s) 121, 491, 826, 855, 858
HpyF3I CTNAG 3 cut(s) 350, 399, 1311
HpySE526I ACGT 4 cut(s) 217, 770, 936, 1008
Hsp92II CATG 8 cut(s) 49, 105, 439, 604, 656, 779, 836, 1138
HspAI GCGC 1 cut(s) 970
KflI GGGWCCC 2 cut(s) 62, 70
KpnI GGTACC 1 cut(s) 332
Ksp22I TGATCA 2 cut(s) 238, 412
Kzo9I GATC 6 cut(s) 238, 250, 342, 412, 519, 979
LmnI GCTCC 4 cut(s) 109, 266, 961, 1241
Lsp1109I GCAGC 8 cut(s) 99, 719, 730, 829, 861, 870, 951, 979
LweI GCATC 3 cut(s) 719, 943, 1038
MabI ACCWGGT 1 cut(s) 618
MaeI CTAG 7 cut(s) 39, 116, 189, 699, 846, 987, 1121
MaeII ACGT 4 cut(s) 217, 770, 936, 1008
MaeIII GTNAC 3 cut(s) 610, 989, 1328
MalI GATC 6 cut(s) 240, 252, 344, 414, 521, 981
MboI GATC 6 cut(s) 238, 250, 342, 412, 519, 979
MboII GAAGA 4 cut(s) 461, 1127, 1139, 1283
MflI RGATCY 1 cut(s) 519
MhlI GDGCHC 1 cut(s) 1213
MlsI TGGCCA 1 cut(s) 929
MluCI AATT 8 cut(s) 296, 312, 394, 677, 863, 1076, 1227, 1296
MluNI TGGCCA 1 cut(s) 929
MlyI GAGTC 1 cut(s) 1153
MmeI TCCRAC 2 cut(s) 75, 858
MnlI CCTC 2 cut(s) 1004, 1284
Mox20I TGGCCA 1 cut(s) 929
MscI TGGCCA 1 cut(s) 929
MseI TTAA 4 cut(s) 867, 1079, 1263, 1284
MslI CAYNNNNRTG 1 cut(s) 86
Msp20I TGGCCA 1 cut(s) 929
MspA1I CMGCKG 2 cut(s) 144, 721
MspCI CTTAAG 1 cut(s) 1262
MspI CCGG 2 cut(s) 66, 509
MspR9I CCNGG 6 cut(s) 66, 67, 160, 423, 510, 620
Mva1269I GAATGC 1 cut(s) 1381
MvaI CCWGG 3 cut(s) 160, 423, 620
MvnI CGCG 1 cut(s) 584
MwoI GCNNNNNNNGC 5 cut(s) 121, 491, 826, 855, 858
NciI CCSGG 3 cut(s) 66, 67, 510
NdeI CATATG 2 cut(s) 1018, 1111
NdeII GATC 6 cut(s) 238, 250, 342, 412, 519, 979
NheI GCTAGC 1 cut(s) 845
NlaIII CATG 8 cut(s) 49, 105, 439, 604, 656, 779, 836, 1138
NlaIV GGNNCC 7 cut(s) 6, 23, 63, 64, 71, 72, 330
NmuCI GTSAC 1 cut(s) 1328
NspI RCATGY 1 cut(s) 1138
NspV TTCGAA 2 cut(s) 1204, 1360
OliI CACNNNNGTG 1 cut(s) 86
PaeR7I CTCGAG 1 cut(s) 995
PciI ACATGT 1 cut(s) 1134
PcsI WCGNNNNNNNCGW 1 cut(s) 1366
PctI GAATGC 1 cut(s) 1381
PfeI GAWTC 5 cut(s) 98, 151, 317, 891, 902
PkrI GCNGC 9 cut(s) 114, 709, 720, 844, 851, 860, 966, 969, 1064
PleI GAGTC 1 cut(s) 1153
PpsI GAGTC 1 cut(s) 1153
PpuMI RGGWCCY 2 cut(s) 62, 70
PscI ACATGT 1 cut(s) 1134
PshBI ATTAAT 1 cut(s) 1079
Psp5II RGGWCCY 2 cut(s) 62, 70
Psp6I CCWGG 3 cut(s) 158, 421, 618
PspFI CCCAGC 1 cut(s) 144
PspGI CCWGG 3 cut(s) 158, 421, 618
PspN4I GGNNCC 7 cut(s) 6, 23, 63, 64, 71, 72, 330
PspPI GGNCC 5 cut(s) 62, 70, 162, 506, 695
PspPPI RGGWCCY 2 cut(s) 62, 70
PstI CTGCAG 2 cut(s) 720, 969
PstNI CAGNNNCTG 1 cut(s) 1318
PsuI RGATCY 1 cut(s) 519
PvuII CAGCTG 1 cut(s) 144
RsaI GTAC 6 cut(s) 168, 330, 581, 1234, 1258, 1317
RsaNI GTAC 6 cut(s) 167, 329, 580, 1233, 1257, 1316
RseI CAYNNNNRTG 1 cut(s) 86
SaqAI TTAA 4 cut(s) 867, 1079, 1263, 1284
SatI GCNGC 9 cut(s) 113, 708, 719, 843, 850, 859, 965, 968, 1063
Sau3AI GATC 6 cut(s) 238, 250, 342, 412, 519, 979
Sau96I GGNCC 5 cut(s) 62, 70, 162, 506, 695
SchI GAGTC 1 cut(s) 1153
ScrFI CCNGG 6 cut(s) 66, 67, 160, 423, 510, 620
SduI GDGCHC 1 cut(s) 1213
SexAI ACCWGGT 1 cut(s) 618
SfaNI GCATC 3 cut(s) 719, 943, 1038
SfcI CTRYAG 2 cut(s) 716, 965
Sfr274I CTCGAG 1 cut(s) 995
SfuI TTCGAA 2 cut(s) 1204, 1360
SinI GGWCC 5 cut(s) 62, 70, 162, 506, 695
SlaI CTCGAG 1 cut(s) 995
SmaI CCCGGG 1 cut(s) 67
SmiMI CAYNNNNRTG 1 cut(s) 86
SmlI CTYRAG 4 cut(s) 995, 1037, 1176, 1262
SmoI CTYRAG 4 cut(s) 995, 1037, 1176, 1262
Sse9I AATT 8 cut(s) 296, 312, 394, 677, 863, 1076, 1227, 1296
SsiI CCGC 5 cut(s) 8, 445, 721, 1062, 1379
SspMI CTAG 7 cut(s) 39, 116, 189, 699, 846, 987, 1121
StyD4I CCNGG 6 cut(s) 64, 65, 158, 421, 508, 618
StyI CCWWGG 1 cut(s) 38
TaaI ACNGT 3 cut(s) 166, 1237, 1282
TaiI ACGT 4 cut(s) 220, 773, 939, 1011
TaqI TCGA 5 cut(s) 552, 754, 996, 1204, 1360
TasI AATT 8 cut(s) 296, 312, 394, 677, 863, 1076, 1227, 1296
TatI WGTACW 2 cut(s) 1232, 1256
TauI GCSGC 1 cut(s) 1065
TfiI GAWTC 5 cut(s) 98, 151, 317, 891, 902
Tru1I TTAA 4 cut(s) 867, 1079, 1263, 1284
Tru9I TTAA 4 cut(s) 867, 1079, 1263, 1284
TscAI CASTG 1 cut(s) 486
TseFI GTSAC 1 cut(s) 1328
TseI GCWGC 8 cut(s) 112, 707, 718, 842, 849, 858, 964, 967
Tsp45I GTSAC 1 cut(s) 1328
TspDTI ATGAA 7 cut(s) 90, 384, 405, 669, 670, 1128, 1140
TspGWI ACGGA 1 cut(s) 34
TspMI CCCGGG 1 cut(s) 65
TspRI CASTG 1 cut(s) 486
Vha464I CTTAAG 1 cut(s) 1262
VpaK11BI GGWCC 5 cut(s) 62, 70, 162, 506, 695
VspI ATTAAT 1 cut(s) 1079
XapI RAATTY 2 cut(s) 394, 1296
XceI RCATGY 1 cut(s) 1138
XhoI CTCGAG 1 cut(s) 995
XmaI CCCGGG 1 cut(s) 65
XmaJI CCTAGG 1 cut(s) 38
XspI CTAG 7 cut(s) 39, 116, 189, 699, 846, 987, 1121
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.