Rh2AG029200

Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2A
OG0002341
Physical Location & Seq
Forward (+)
2050363 .. 2051245
883 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2AG029200.1

Sequence Viewer

Length: 357 bp
ATGGCTCCGGCATATCAACACAAGGAAAATGAGATTAAGTCAGATGATGAATTCGAGCTTCTGCTTCACCGAGGGTCATGGCTTGCTGCTGGGGTCAAGCTGAAGGTAAGAGGAGAAGTGAGTGAAAATACTAAAGCTTTGTTTCCCTTCAGGATTGTTTATGGGGATGAATCTTTGGGTCGCCTGTATGAAAATTCTCAGACCTCTTCCAATCAGCTACCTGGGCAATCAGACAATGTCAAGCGGGCAGTGGCTCTTGGGCGTTATCTTCAAAATCCACTAGCAATGGTTGCCACACTCTGCGGACCTGGAAGAGATATCTTATCTTGGAAATTGCTCATGCAGTTCCCCTTTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000785 GO:0000988 GO:0000990 GO:0000991 GO:0002637 GO:0002682 GO:0002694 GO:0002697 GO:0002700 GO:0002703 GO:0002706 GO:0002712 GO:0002819 GO:0002822 GO:0002889 GO:0003006 GO:0003674 GO:0003682 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006325 GO:0006338 GO:0006342 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009506 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0010793 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030054 GO:0031056 GO:0031057 GO:0031060 GO:0031061 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031491 GO:0031974 GO:0031981 GO:0032239 GO:0032268 GO:0032269 GO:0032386 GO:0032501 GO:0032502 GO:0032774 GO:0032784 GO:0032786 GO:0032879 GO:0032880 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0033157 GO:0034243 GO:0034641 GO:0034645 GO:0034654 GO:0034728 GO:0035327 GO:0040029 GO:0042393 GO:0042789 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0043954 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045191 GO:0045595 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0046822 GO:0046825 GO:0046831 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050684 GO:0050776 GO:0050789 GO:0050793 GO:0050794 GO:0050864 GO:0050865 GO:0051049 GO:0051052 GO:0051128 GO:0051129 GO:0051147 GO:0051171 GO:0051172 GO:0051173 GO:0051223 GO:0051239 GO:0051246 GO:0051248 GO:0051249 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0055044 GO:0060255 GO:0060341 GO:0061085 GO:0061086 GO:0061458 GO:0065007 GO:0070013 GO:0070201 GO:0070827 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090087 GO:0090304 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902275 GO:1902679 GO:1902680 GO:1903311 GO:1903506 GO:1903507 GO:1903508 GO:1903827 GO:1905268 GO:2000026 GO:2000112 GO:2000113 GO:2000197 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DLD HHH_7 HTH_44 SH2_2 SPT6_acidic YqgF

Protein Analysis

118

Amino Acids

13.27

Weight (kDa)

7.87

Isoelectric Point (pI)

32.08

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YqgF PF14639 44 - 101 3e-07 Holliday-junction resolvase-like of SPT6
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 244, 303
AcsI RAATTY 2 cut(s) 50, 193
AcuI CTGAAG 2 cut(s) 122, 133
AgsI TTSAA 1 cut(s) 272
AjnI CCWGG 2 cut(s) 220, 307
AluBI AGCT 4 cut(s) 58, 100, 137, 217
AluI AGCT 4 cut(s) 58, 100, 137, 217
ApeKI GCWGC 1 cut(s) 86
ApoI RAATTY 2 cut(s) 50, 193
AspS9I GGNCC 1 cut(s) 305
AsuHPI GGTGA 1 cut(s) 59
AvaII GGWCC 1 cut(s) 305
BbvI GCAGC 1 cut(s) 73
BciT130I CCWGG 2 cut(s) 222, 309
BfaI CTAG 1 cut(s) 281
BisI GCNGC 1 cut(s) 87
BlsI GCNGC 1 cut(s) 88
Bme1390I CCNGG 2 cut(s) 222, 309
Bme18I GGWCC 1 cut(s) 305
BmgT120I GGNCC 1 cut(s) 305
BmiI GGNNCC 1 cut(s) 6
BmrFI CCNGG 2 cut(s) 222, 309
BsaJI CCNNGG 2 cut(s) 70, 221
Bse3DI GCAATG 1 cut(s) 291
BseBI CCWGG 2 cut(s) 222, 309
BseDI CCNNGG 2 cut(s) 70, 221
BseGI GGATG 1 cut(s) 172
BseMI GCAATG 1 cut(s) 291
BseMII CTCAG 1 cut(s) 212
BseRI GAGGAG 1 cut(s) 126
BseXI GCAGC 1 cut(s) 73
BseYI CCCAGC 1 cut(s) 89
BsiSI CCGG 1 cut(s) 8
BspACI CCGC 2 cut(s) 244, 303
BspCNI CTCAG 1 cut(s) 211
BspLI GGNNCC 1 cut(s) 6
BsrDI GCAATG 1 cut(s) 291
BssECI CCNNGG 2 cut(s) 70, 221
Bst2UI CCWGG 2 cut(s) 222, 309
Bst6I CTCTTC 2 cut(s) 211, 307
BstAPI GCANNNNNTGC 1 cut(s) 290
BstC8I GCNNGC 2 cut(s) 84, 246
BstDEI CTNAG 1 cut(s) 198
BstF5I GGATG 1 cut(s) 172
BstMWI GCNNNNNNNGC 2 cut(s) 223, 290
BstNI CCWGG 2 cut(s) 222, 309
BstSCI CCNGG 2 cut(s) 220, 307
BstV1I GCAGC 1 cut(s) 73
BtsCI GGATG 1 cut(s) 172
BtsI GCAGTG 1 cut(s) 255
BtsIMutI CAGTG 1 cut(s) 255
Cac8I GCNNGC 2 cut(s) 84, 246
Cfr13I GGNCC 1 cut(s) 305
CviAII CATG 2 cut(s) 78, 340
CviJI RGCY 7 cut(s) 5, 58, 82, 100, 137, 217, 254
CviKI_1 RGCY 7 cut(s) 5, 58, 82, 100, 137, 217, 254
DdeI CTNAG 1 cut(s) 198
Eam1104I CTCTTC 2 cut(s) 211, 307
EarI CTCTTC 2 cut(s) 211, 307
Eco32I GATATC 1 cut(s) 319
Eco47I GGWCC 1 cut(s) 305
Eco57I CTGAAG 2 cut(s) 122, 133
EcoRI GAATTC 1 cut(s) 50
EcoRII CCWGG 2 cut(s) 220, 307
EcoRV GATATC 1 cut(s) 319
FaeI CATG 2 cut(s) 81, 343
FaiI YATR 5 cut(s) 13, 79, 162, 189, 341
FatI CATG 2 cut(s) 77, 339
FauI CCCGC 1 cut(s) 237
Fnu4HI GCNGC 1 cut(s) 87
FokI GGATG 1 cut(s) 179
Fsp4HI GCNGC 1 cut(s) 87
FspBI CTAG 1 cut(s) 281
GluI GCNGC 1 cut(s) 87
GsaI CCCAGC 1 cut(s) 93
HapII CCGG 1 cut(s) 8
Hin1II CATG 2 cut(s) 81, 343
HindIII AAGCTT 1 cut(s) 135
HinfI GANTC 1 cut(s) 170
HpaII CCGG 1 cut(s) 8
HphI GGTGA 1 cut(s) 59
Hpy188I TCNGA 3 cut(s) 43, 201, 232
Hpy188III TCNNGA 1 cut(s) 151
HpyAV CCTTC 2 cut(s) 97, 157
HpyCH4V TGCA 1 cut(s) 343
HpyF10VI GCNNNNNNNGC 2 cut(s) 223, 290
HpyF3I CTNAG 1 cut(s) 198
Hsp92II CATG 2 cut(s) 81, 343
LmnI GCTCC 1 cut(s) 10
LpnPI CCDG 8 cut(s) 21, 75, 136, 197, 207, 234, 294, 321
Lsp1109I GCAGC 1 cut(s) 73
MaeI CTAG 1 cut(s) 281
MboII GAAGA 3 cut(s) 198, 260, 324
MluCI AATT 3 cut(s) 50, 193, 332
MnlI CCTC 3 cut(s) 65, 104, 214
MseI TTAA 1 cut(s) 36
MspI CCGG 1 cut(s) 8
MspR9I CCNGG 2 cut(s) 222, 309
MvaI CCWGG 2 cut(s) 222, 309
MwoI GCNNNNNNNGC 2 cut(s) 223, 290
NlaIII CATG 2 cut(s) 81, 343
NlaIV GGNNCC 1 cut(s) 6
PfeI GAWTC 1 cut(s) 170
PflFI GACNNNGTC 1 cut(s) 236
PkrI GCNGC 1 cut(s) 88
Psp6I CCWGG 2 cut(s) 220, 307
PspFI CCCAGC 1 cut(s) 89
PspGI CCWGG 2 cut(s) 220, 307
PspN4I GGNNCC 1 cut(s) 6
PspPI GGNCC 1 cut(s) 305
PsyI GACNNNGTC 1 cut(s) 236
SaqAI TTAA 1 cut(s) 36
SatI GCNGC 1 cut(s) 87
Sau96I GGNCC 1 cut(s) 305
ScrFI CCNGG 2 cut(s) 222, 309
SetI ASST 8 cut(s) 60, 102, 108, 139, 206, 219, 223, 310
SinI GGWCC 1 cut(s) 305
Sse9I AATT 3 cut(s) 50, 193, 332
SsiI CCGC 2 cut(s) 244, 303
SspMI CTAG 1 cut(s) 281
StyD4I CCNGG 2 cut(s) 220, 307
TaqI TCGA 1 cut(s) 54
TasI AATT 3 cut(s) 50, 193, 332
TfiI GAWTC 1 cut(s) 170
Tru1I TTAA 1 cut(s) 36
Tru9I TTAA 1 cut(s) 36
TscAI CASTG 1 cut(s) 255
TseI GCWGC 1 cut(s) 86
TspDTI ATGAA 3 cut(s) 63, 183, 204
TspRI CASTG 1 cut(s) 255
Tth111I GACNNNGTC 1 cut(s) 236
VpaK11BI GGWCC 1 cut(s) 305
XapI RAATTY 2 cut(s) 50, 193
XspI CTAG 1 cut(s) 281
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.