Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G63210 |
| fragaria_vesca | FvH4_1g02481 FvH4_1g02810 |
| rosa_chinensis | RchiOBHm_Chr2g0087471 RchiOBHm_Chr2g0087481 RchiOBHm_Chr2g0087901 RchiOBHm_Chr2g0087911 RchiOBHm_Chr2g0087921 RchiOBHm_Chr2g0087931 |
| rosa_laevigata | RLG00000015871 RLG00000015872 RLG00000015911 RLG00000015912 |
| rosa_multiflora | Rmu_sc0006064.1_g000017 Rmu_sc0008385.1_g000023 Rmu_sc0013931.1_g000008 Rmu_sc0014136.1_g000012 |
| rosa_roxburghii | Rroxscaffold_2G00153120 Rroxscaffold_2G00153130 |
| rosa_rugosa | Rorug01G0475800.1 Rorug01G0479400 Rorug01G0479700 |
| rosa_samantha | Rh2AG029200 Rh2AG029300 Rh2AG034100 Rh2AG034200 Rh2AG034500 Rh2BG029400 Rh2BG033300 Rh2BG033400 Rh2BG033500 Rh2CG029400 Rh2CG034000 Rh2CG034200 Rh2CG034500 Rh2DG029200 Rh2DG033700 Rh2DG033900 Rh2DG034200 |
| rosa_wichuraiana | Rw2G002320 Rw2G002680 Rw2G002690 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcuI | CTGAAG | 1 cut(s) | 235 |
| AdeI | CACNNNGTG | 1 cut(s) | 274 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 224 |
| AgsI | TTSAA | 4 cut(s) | 112, 215, 231, 321 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 207, 239 |
| AluBI | AGCT | 1 cut(s) | 115 |
| AluI | AGCT | 1 cut(s) | 115 |
| AseI | ATTAAT | 1 cut(s) | 306 |
| AspLEI | GCGC | 1 cut(s) | 70 |
| BbsI | GAAGAC | 1 cut(s) | 54 |
| BccI | CCATC | 1 cut(s) | 88 |
| BciVI | GTATCC | 1 cut(s) | 192 |
| BfuI | GTATCC | 1 cut(s) | 192 |
| BmiI | GGNNCC | 1 cut(s) | 78 |
| BmsI | GCATC | 2 cut(s) | 255, 277 |
| BpiI | GAAGAC | 1 cut(s) | 54 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 224 |
| Bse1I | ACTGG | 1 cut(s) | 168 |
| BseGI | GGATG | 4 cut(s) | 80, 103, 247, 292 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 224 |
| BseNI | ACTGG | 1 cut(s) | 168 |
| Bsh1285I | CGRYCG | 2 cut(s) | 9, 94 |
| BsiEI | CGRYCG | 2 cut(s) | 9, 94 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 224 |
| BsmI | GAATGC | 1 cut(s) | 138 |
| Bsp143I | GATC | 3 cut(s) | 6, 42, 91 |
| BspLI | GGNNCC | 1 cut(s) | 78 |
| BsrI | ACTGG | 1 cut(s) | 168 |
| BssMI | GATC | 3 cut(s) | 6, 42, 91 |
| Bst4CI | ACNGT | 1 cut(s) | 88 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 274 |
| BstF5I | GGATG | 4 cut(s) | 80, 103, 247, 292 |
| BstHHI | GCGC | 1 cut(s) | 70 |
| BstKTI | GATC | 3 cut(s) | 9, 45, 94 |
| BstMBI | GATC | 3 cut(s) | 6, 42, 91 |
| BstMCI | CGRYCG | 2 cut(s) | 9, 94 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 274 |
| BstV2I | GAAGAC | 1 cut(s) | 54 |
| BsuI | GTATCC | 1 cut(s) | 192 |
| BtsCI | GGATG | 4 cut(s) | 80, 103, 247, 292 |
| BtsIMutI | CAGTG | 1 cut(s) | 200 |
| CfoI | GCGC | 1 cut(s) | 70 |
| CviAII | CATG | 3 cut(s) | 58, 182, 272 |
| CviJI | RGCY | 1 cut(s) | 115 |
| CviKI_1 | RGCY | 1 cut(s) | 115 |
| DpnI | GATC | 3 cut(s) | 8, 44, 93 |
| DpnII | GATC | 3 cut(s) | 6, 42, 91 |
| DraIII | CACNNNGTG | 1 cut(s) | 274 |
| Eco57I | CTGAAG | 1 cut(s) | 235 |
| FaeI | CATG | 3 cut(s) | 61, 185, 275 |
| FaiI | YATR | 8 cut(s) | 59, 142, 161, 179, 183, 204, 273, 352 |
| FatI | CATG | 3 cut(s) | 57, 181, 271 |
| FokI | GGATG | 4 cut(s) | 67, 110, 254, 299 |
| GlaI | GCGC | 1 cut(s) | 69 |
| HhaI | GCGC | 1 cut(s) | 70 |
| Hin1II | CATG | 3 cut(s) | 61, 185, 275 |
| Hin6I | GCGC | 1 cut(s) | 68 |
| HinP1I | GCGC | 1 cut(s) | 68 |
| HindIII | AAGCTT | 1 cut(s) | 113 |
| HinfI | GANTC | 3 cut(s) | 171, 190, 338 |
| Hpy188I | TCNGA | 3 cut(s) | 127, 303, 337 |
| Hpy188III | TCNNGA | 1 cut(s) | 95 |
| HpyAV | CCTTC | 1 cut(s) | 161 |
| HpyCH4III | ACNGT | 1 cut(s) | 88 |
| HpyCH4V | TGCA | 5 cut(s) | 136, 262, 268, 277, 290 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 274 |
| Hsp92II | CATG | 3 cut(s) | 61, 185, 275 |
| HspAI | GCGC | 1 cut(s) | 68 |
| Kzo9I | GATC | 3 cut(s) | 6, 42, 91 |
| LpnPI | CCDG | 5 cut(s) | 116, 149, 223, 238, 299 |
| LweI | GCATC | 2 cut(s) | 255, 277 |
| MaeIII | GTNAC | 2 cut(s) | 17, 25 |
| MalI | GATC | 3 cut(s) | 8, 44, 93 |
| MboI | GATC | 3 cut(s) | 6, 42, 91 |
| MboII | GAAGA | 4 cut(s) | 23, 59, 74, 241 |
| MfeI | CAATTG | 1 cut(s) | 321 |
| MluCI | AATT | 3 cut(s) | 281, 321, 328 |
| MlyI | GAGTC | 1 cut(s) | 199 |
| MseI | TTAA | 1 cut(s) | 306 |
| MslI | CAYNNNNRTG | 1 cut(s) | 56 |
| MunI | CAATTG | 1 cut(s) | 321 |
| Mva1269I | GAATGC | 1 cut(s) | 138 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 274 |
| NdeII | GATC | 3 cut(s) | 6, 42, 91 |
| NlaIII | CATG | 3 cut(s) | 61, 185, 275 |
| NlaIV | GGNNCC | 1 cut(s) | 78 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 51, 150 |
| PctI | GAATGC | 1 cut(s) | 138 |
| PfeI | GAWTC | 2 cut(s) | 171, 338 |
| Ple19I | CGATCG | 2 cut(s) | 9, 94 |
| PleI | GAGTC | 1 cut(s) | 198 |
| PpsI | GAGTC | 1 cut(s) | 198 |
| PshBI | ATTAAT | 1 cut(s) | 306 |
| PspN4I | GGNNCC | 1 cut(s) | 78 |
| PvuI | CGATCG | 2 cut(s) | 9, 94 |
| RseI | CAYNNNNRTG | 1 cut(s) | 56 |
| SaqAI | TTAA | 1 cut(s) | 306 |
| Sau3AI | GATC | 3 cut(s) | 6, 42, 91 |
| SchI | GAGTC | 1 cut(s) | 199 |
| SetI | ASST | 3 cut(s) | 117, 220, 257 |
| SfaNI | GCATC | 2 cut(s) | 255, 277 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 56 |
| Sse9I | AATT | 3 cut(s) | 281, 321, 328 |
| TaaI | ACNGT | 1 cut(s) | 88 |
| TaqI | TCGA | 4 cut(s) | 9, 45, 54, 90 |
| TasI | AATT | 3 cut(s) | 281, 321, 328 |
| TfiI | GAWTC | 2 cut(s) | 171, 338 |
| Tru1I | TTAA | 1 cut(s) | 306 |
| Tru9I | TTAA | 1 cut(s) | 306 |
| TscAI | CASTG | 1 cut(s) | 200 |
| TspRI | CASTG | 1 cut(s) | 200 |
| VspI | ATTAAT | 1 cut(s) | 306 |