FvH4_1g02810

Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0002341
Physical Location & Seq
Forward (+)
1597109 .. 1599471
2363 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g02810.t1

Sequence Viewer

Length: 2073 bp
ATGGCGCTCGAAGATAACTGGGTATTGGTCGAAGACATCGACATGGAAGAAGGGCACAAGGAACCATCCACAGTCGATCACCAGATATACGATGGCGACCAAAGCATGCATGAAGAGAGTGCATGGATACATAATCAACTTGAACCTGTGTTTGGTCCCATAAGCAGGGATGACATCTTCAGGTTTTTGCAGATGCACCATTCGCAGAAATTGTATACAAGTACTATTCCCTTTATTGCTATGTATCGAAAAGAGGAGTGCCTTGGCTTATTGAAAGATCCTGAGCAACCTGAAGAAGAAAACTTAGTGTGGCACAAGGTACTTTGGCGCGTTCAGGAGTTGCACAGAAAGTGGCTGCTGTTTCAGAATCAGAAAAGGGCTTTGCAAATTCACTACAATAAGCTCTTTGAGGAAGTGTCTCGACGAGGATTCACGCATGATGAGACTCCACGGCTTTTTGAATCAATTATGAAGTCACTCGTGGCTGCAGAGACTGAGAGAGAGGTGGAGGATGTCAACACCAAGTTTAACTTGCGCTTCCCTGCAGGTGAGGGTCAGGCTGCTATTGATATCAGTAGTGATCCTGATGTGAGGAAGTATGTCCGGTGCAACTACTTTGATTTCGCTGAGGTATCAGTCTCGAGCATCAAACCTGGTTTGAATATGGATTGTCAAAGAAAGCCATTGAATGATTTGAGGATGCACAATGGTTACTTGTCCAAAAGGCCGAGGAGGAGAATCATGTTCAAGTTACTATCAAGCTGCCCGAAGAACTTTCTTCTGCCTTCAATGGAGAAAGAAGCAAGATCCTTGTTGGTGAGTAGAGCGAAAAACTGGTTACTTATGCAGTGTGGAAAGGCTTTGTGGAATAGAGTCTCTAAGGCACCGCCATATAAACGGAACCAAACTGCACCACCTAGGGTCTTGGCTTGCTGTTGGGGTCCTGGGGACCCTGCAACCACTTTGGTCATGTTGGATTCATGTGGGGAGCTGCTAGATGTGCTTTGCATAGGGACTCTCAGATGGGAGAATCTCACCTGGACCCCATTCTTTGATGAACCTACTAGTATGCGTATGAAGCATGATGATCAGCCTACCTGGACAGTCAGGCATAGTCAGGCGGGCTGTGGCTCTTGGCCGTTATCTTCAAAATCCACTTGCAATGGTTGCCACACTTTGCGACCAGGAAGAGAAATCTTATCTTGGAAACCACTCACTTCTCCTTTTGATAACTTCCTCACCTTGGATGAGAAGTACGCGATGATTGAACAGGTCATGGTAGATGTTACAAACCAGGTTGGCCTTGACATAAATTTGGCTACAACCCATGAATGGTTATTTGCACCTTTGCAATTCATATCTGGACTTGGACCTATTAAGGCAGCATCTCTGCAGCAGTCATTGGTACGCAGTGGTAAAATACTTGCTCGAAGGGAGTTGGCTACATTGCATGGGCTTGGTACAAGTGCATATCTGAATGCAGTTGGTTTCTTGTATATTAAGCAGCATGGGTTGACTGACAGCCGAACTAGCAACACCTTTAGCACTCTGTTGGATGGTACAAGAATCCATCCAGAATCCTATTTGCTTGCACAAGAAATGGTTAAAGATGTTTATGATGATAAGGATGCAATGGAGCTGCAGCGCATTACCGATCAACCTAGTTACCTTGAGAAGCTTGACATTGAAGCATATGCTAAAAGCAAAAGACTTGAGAATAAGATGCAAACATTGTGTGGTATCAGGAGGGAATTAATACAGGGGTTCCAGGATGTGCGTCAAAACTACGAAGAACTAAATGAAGATGAACAGTTCTATACGATGACAGGTGAAACTTGCGACACACTCTCTGAAGGAAGCATTGTGCAGGCGATAGTCCGCAGGGCTCTTCCGAAAGTGACAATCTGTACTGTGGGAGCTGGATTGACATGTAAGCTTAGGAGAGAAGACTTTAAGGATCATGGGAGGGAAATTTCAGACTTGTCTCAAGTTATGAAGGTGGGTGACATTATCACTTGCAAAATCAAGCGCCTTTTCAAGAAGGAAGTGATTGCAAAACTATGTAGTCTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000785 GO:0000988 GO:0000990 GO:0000991 GO:0002637 GO:0002682 GO:0002694 GO:0002697 GO:0002700 GO:0002703 GO:0002706 GO:0002712 GO:0002819 GO:0002822 GO:0002889 GO:0003006 GO:0003674 GO:0003682 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006325 GO:0006338 GO:0006342 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009506 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0010793 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030054 GO:0031056 GO:0031057 GO:0031060 GO:0031061 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031491 GO:0031974 GO:0031981 GO:0032239 GO:0032268 GO:0032269 GO:0032386 GO:0032501 GO:0032502 GO:0032774 GO:0032784 GO:0032786 GO:0032879 GO:0032880 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0033157 GO:0034243 GO:0034641 GO:0034645 GO:0034654 GO:0034728 GO:0035327 GO:0040029 GO:0042393 GO:0042789 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0043954 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045191 GO:0045595 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0046822 GO:0046825 GO:0046831 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050684 GO:0050776 GO:0050789 GO:0050793 GO:0050794 GO:0050864 GO:0050865 GO:0051049 GO:0051052 GO:0051128 GO:0051129 GO:0051147 GO:0051171 GO:0051172 GO:0051173 GO:0051223 GO:0051239 GO:0051246 GO:0051248 GO:0051249 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0055044 GO:0060255 GO:0060341 GO:0061085 GO:0061086 GO:0061458 GO:0065007 GO:0070013 GO:0070201 GO:0070827 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090087 GO:0090304 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902275 GO:1902679 GO:1902680 GO:1903311 GO:1903506 GO:1903507 GO:1903508 GO:1903827 GO:1905268 GO:2000026 GO:2000112 GO:2000113 GO:2000197 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DLD HHH_7 HTH_44 SH2_2 SPT6_acidic YqgF

Protein Analysis

691

Amino Acids

79.34

Weight (kDa)

6.47

Isoelectric Point (pI)

51.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HHH_7 PF14635 407 - 500 7.1e-16 Helix-hairpin-helix motif
HHH_9 PF17674 518 - 593 1.9e-07 HHH domain
Spt6_S1 PF21710 605 - 687 1.5e-07 Spt6, S1/OB domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 536
Acc36I ACCTGC 1 cut(s) 536
AccB1I GGYRCC 1 cut(s) 883
AccI GTMKAC 1 cut(s) 215
AccII CGCG 2 cut(s) 330, 1259
AciI CCGC 3 cut(s) 887, 1121, 1879
AclWI GGATC 4 cut(s) 272, 575, 801, 1965
AcoI YGGCCR 1 cut(s) 1136
AcsI RAATTY 3 cut(s) 387, 1312, 1971
AcuI CTGAAG 3 cut(s) 163, 312, 1872
AfaI GTAC 7 cut(s) 223, 321, 1256, 1407, 1462, 1561, 1909
AfiI CCNNNNNNNGG 4 cut(s) 152, 165, 1243, 1332
AflIII ACRYGT 1 cut(s) 1928
AhlI ACTAGT 1 cut(s) 1064
AjnI CCWGG 7 cut(s) 652, 943, 1037, 1097, 1183, 1293, 1767
AjuI GAANNNNNNNTTGG 2 cut(s) 135, 167
AluBI AGCT 7 cut(s) 403, 762, 991, 1639, 1678, 1919, 1936
AluI AGCT 7 cut(s) 403, 762, 991, 1639, 1678, 1919, 1936
Alw26I GTCTC 6 cut(s) 423, 437, 485, 643, 880, 1989
AlwI GGATC 4 cut(s) 272, 575, 801, 1965
AlwNI CAGNNNCTG 1 cut(s) 494
Ama87I CYCGRG 1 cut(s) 640
AoxI GGCC 3 cut(s) 725, 1136, 1300
ApoI RAATTY 3 cut(s) 387, 1312, 1971
AseI ATTAAT 1 cut(s) 1754
AspA2I CCTAGG 1 cut(s) 917
AspLEI GCGC 5 cut(s) 7, 330, 537, 1647, 2031
AspS9I GGNCC 5 cut(s) 155, 941, 949, 1041, 1370
AsuHPI GGTGA 7 cut(s) 71, 560, 829, 1027, 1231, 1841, 2015
AvaI CYCGRG 1 cut(s) 640
AvaII GGWCC 5 cut(s) 155, 941, 949, 1041, 1370
AvrII CCTAGG 1 cut(s) 917
BaeGI GKGCMC 1 cut(s) 57
BanI GGYRCC 1 cut(s) 883
BanII GRGCYC 1 cut(s) 1888
BauI CACGAG 1 cut(s) 479
BbsI GAAGAC 2 cut(s) 39, 1953
BbvCI CCTCAGC 1 cut(s) 627
BccI CCATC 5 cut(s) 73, 86, 1017, 1550, 1578
BceAI ACGGC 2 cut(s) 467, 1123
BciT130I CCWGG 7 cut(s) 654, 945, 1039, 1099, 1185, 1295, 1769
BciVI GTATCC 1 cut(s) 120
BclI TGATCA 1 cut(s) 1087
BcoDI GTCTC 6 cut(s) 423, 437, 485, 643, 880, 1989
BcuI ACTAGT 1 cut(s) 1064
BfaI CTAG 5 cut(s) 918, 995, 1065, 1530, 1662
BfmI CTRYAG 5 cut(s) 486, 543, 1391, 1640, 2069
BfoI RGCGCY 2 cut(s) 8, 2032
BfuAI ACCTGC 1 cut(s) 536
BfuI GTATCC 1 cut(s) 120
BlnI CCTAGG 1 cut(s) 917
BmcAI AGTACT 1 cut(s) 223
Bme1390I CCNGG 7 cut(s) 654, 945, 1039, 1099, 1185, 1295, 1769
Bme18I GGWCC 5 cut(s) 155, 941, 949, 1041, 1370
BmeT110I CYCGRG 1 cut(s) 640
BmgT120I GGNCC 5 cut(s) 155, 941, 949, 1041, 1370
BmiI GGNNCC 9 cut(s) 63, 157, 885, 902, 942, 950, 951, 1043, 1766
BmrFI CCNGG 7 cut(s) 654, 945, 1039, 1099, 1185, 1295, 1769
BmrI ACTGGG 1 cut(s) 28
BmsI GCATC 6 cut(s) 183, 654, 690, 1394, 1618, 1713
BmuI ACTGGG 1 cut(s) 28
BpiI GAAGAC 2 cut(s) 39, 1953
Bpu10I CCTNAGC 3 cut(s) 282, 627, 1937
BpuEI CTTGAG 3 cut(s) 1691, 1733, 1971
BsaJI CCNNGG 6 cut(s) 262, 449, 728, 917, 944, 1242
BsaWI WCCGGW 1 cut(s) 603
Bsc4I CCNNNNNNNGG 4 cut(s) 152, 165, 1243, 1332
Bse1I ACTGG 2 cut(s) 23, 839
Bse3DI GCAATG 3 cut(s) 1168, 1445, 1638
BseBI CCWGG 7 cut(s) 654, 945, 1039, 1099, 1185, 1295, 1769
BseDI CCNNGG 6 cut(s) 262, 449, 728, 917, 944, 1242
BseGI GGATG 9 cut(s) 65, 175, 517, 705, 1252, 1561, 1570, 1633, 1777
BseLI CCNNNNNNNGG 4 cut(s) 152, 165, 1243, 1332
BseMI GCAATG 3 cut(s) 1168, 1445, 1638
BseMII CTCAG 4 cut(s) 273, 486, 618, 1033
BseNI ACTGG 2 cut(s) 23, 839
BseRI GAGGAG 3 cut(s) 269, 745, 748
BseSI GKGCMC 1 cut(s) 57
BsgI GTGCAG 2 cut(s) 894, 1886
Bsh1236I CGCG 2 cut(s) 330, 1259
BshFI GGCC 3 cut(s) 727, 1138, 1302
BshNI GGYRCC 1 cut(s) 883
BsiHKCI CYCGRG 1 cut(s) 640
BsiSI CCGG 1 cut(s) 604
BslFI GGGAC 3 cut(s) 141, 962, 1027
BslI CCNNNNNNNGG 4 cut(s) 152, 165, 1243, 1332
BsmAI GTCTC 6 cut(s) 423, 437, 485, 643, 880, 1989
BsmFI GGGAC 3 cut(s) 141, 962, 1027
BsmI GAATGC 1 cut(s) 1483
BsnI GGCC 3 cut(s) 727, 1138, 1302
BsoBI CYCGRG 1 cut(s) 640
Bsp1286I GDGCHC 2 cut(s) 57, 1888
Bsp143I GATC 7 cut(s) 76, 277, 580, 806, 1087, 1654, 1957
BspACI CCGC 3 cut(s) 887, 1121, 1879
BspANI GGCC 3 cut(s) 727, 1138, 1302
BspCNI CTCAG 4 cut(s) 274, 487, 619, 1032
BspFNI CGCG 2 cut(s) 330, 1259
BspLI GGNNCC 9 cut(s) 63, 157, 885, 902, 942, 950, 951, 1043, 1766
BspMAI CTGCAG 4 cut(s) 490, 547, 1395, 1644
BspMI ACCTGC 1 cut(s) 536
BspPI GGATC 4 cut(s) 272, 575, 801, 1965
BspQI GCTCTTC 1 cut(s) 1893
BspT107I GGYRCC 1 cut(s) 883
BsrDI GCAATG 3 cut(s) 1168, 1445, 1638
BsrI ACTGG 2 cut(s) 23, 839
BssECI CCNNGG 6 cut(s) 262, 449, 728, 917, 944, 1242
BssMI GATC 7 cut(s) 76, 277, 580, 806, 1087, 1654, 1957
BssNAI GTATAC 1 cut(s) 216
BssSI CACGAG 1 cut(s) 479
BssT1I CCWWGG 3 cut(s) 262, 917, 1242
Bst1107I GTATAC 1 cut(s) 216
Bst2BI CACGAG 1 cut(s) 479
Bst2UI CCWGG 7 cut(s) 654, 945, 1039, 1099, 1185, 1295, 1769
Bst4CI ACNGT 4 cut(s) 73, 1105, 1812, 1912
Bst6I CTCTTC 3 cut(s) 108, 1183, 1893
BstAPI GCANNNNNTGC 1 cut(s) 1167
BstC8I GCNNGC 5 cut(s) 107, 931, 1123, 1590, 1869
BstDEI CTNAG 7 cut(s) 282, 304, 495, 627, 879, 1019, 1937
BstDSI CCRYGG 1 cut(s) 449
BstF5I GGATG 9 cut(s) 65, 175, 517, 705, 1252, 1561, 1570, 1633, 1777
BstFNI CGCG 2 cut(s) 330, 1259
BstH2I RGCGCY 2 cut(s) 8, 2032
BstHHI GCGC 5 cut(s) 7, 330, 537, 1647, 2031
BstKTI GATC 7 cut(s) 79, 280, 583, 809, 1090, 1657, 1960
BstMAI GTCTC 6 cut(s) 423, 437, 485, 643, 880, 1989
BstMBI GATC 7 cut(s) 76, 277, 580, 806, 1087, 1654, 1957
BstMWI GCNNNNNNNGC 6 cut(s) 102, 202, 1000, 1078, 1167, 1530
BstNI CCWGG 7 cut(s) 654, 945, 1039, 1099, 1185, 1295, 1769
BstNSI RCATGY 2 cut(s) 109, 1932
BstSCI CCNGG 7 cut(s) 652, 943, 1037, 1097, 1183, 1293, 1767
BstSFI CTRYAG 5 cut(s) 486, 543, 1391, 1640, 2069
BstSLI GKGCMC 1 cut(s) 57
BstUI CGCG 2 cut(s) 330, 1259
BstV2I GAAGAC 2 cut(s) 39, 1953
BstX2I RGATCY 2 cut(s) 277, 806
BstYI RGATCY 2 cut(s) 277, 806
BstZ17I GTATAC 1 cut(s) 216
BsuI GTATCC 1 cut(s) 120
BsuRI GGCC 3 cut(s) 727, 1138, 1302
BtgI CCRYGG 1 cut(s) 449
BtgZI GCGATG 1 cut(s) 1274
BtsCI GGATG 9 cut(s) 65, 175, 517, 705, 1252, 1561, 1570, 1633, 1777
BtsI GCAGTG 2 cut(s) 854, 1417
BtsIMutI CAGTG 2 cut(s) 854, 1417
BveI ACCTGC 1 cut(s) 536
Cac8I GCNNGC 5 cut(s) 107, 931, 1123, 1590, 1869
CaiI CAGNNNCTG 1 cut(s) 494
CfoI GCGC 5 cut(s) 7, 330, 537, 1647, 2031
Cfr13I GGNCC 5 cut(s) 155, 941, 949, 1041, 1370
CseI GACGC 1 cut(s) 1766
CsiI ACCWGGT 2 cut(s) 652, 1293
Csp6I GTAC 7 cut(s) 222, 320, 1255, 1406, 1461, 1560, 1908
CviQI GTAC 7 cut(s) 222, 320, 1255, 1406, 1461, 1560, 1908
DdeI CTNAG 7 cut(s) 282, 304, 495, 627, 879, 1019, 1937
DpnI GATC 7 cut(s) 78, 279, 582, 808, 1089, 1656, 1959
DpnII GATC 7 cut(s) 76, 277, 580, 806, 1087, 1654, 1957
EaeI YGGCCR 1 cut(s) 1136
Eam1104I CTCTTC 3 cut(s) 108, 1183, 1893
EarI CTCTTC 3 cut(s) 108, 1183, 1893
Eco130I CCWWGG 3 cut(s) 262, 917, 1242
Eco24I GRGCYC 1 cut(s) 1888
Eco32I GATATC 1 cut(s) 571
Eco47I GGWCC 5 cut(s) 155, 941, 949, 1041, 1370
Eco57I CTGAAG 3 cut(s) 163, 312, 1872
Eco88I CYCGRG 1 cut(s) 640
EcoO109I RGGNCCY 2 cut(s) 941, 949
EcoRII CCWGG 7 cut(s) 652, 943, 1037, 1097, 1183, 1293, 1767
EcoRV GATATC 1 cut(s) 571
EcoT14I CCWWGG 3 cut(s) 262, 917, 1242
EcoT22I ATGCAT 1 cut(s) 111
EcoT38I GRGCYC 1 cut(s) 1888
ErhI CCWWGG 3 cut(s) 262, 917, 1242
FalI AAGNNNNNCTT 2 cut(s) 515, 547
FaqI GGGAC 3 cut(s) 141, 962, 1027
FauI CCCGC 1 cut(s) 1114
FauNDI CATATG 1 cut(s) 1693
FbaI TGATCA 1 cut(s) 1087
FblI GTMKAC 1 cut(s) 215
FokI GGATG 9 cut(s) 52, 182, 524, 712, 1259, 1557, 1568, 1640, 1784
FriOI GRGCYC 1 cut(s) 1888
FspBI CTAG 5 cut(s) 918, 995, 1065, 1530, 1662
GlaI GCGC 5 cut(s) 6, 329, 536, 1646, 2030
HaeII RGCGCY 2 cut(s) 8, 2032
HaeIII GGCC 3 cut(s) 727, 1138, 1302
HapII CCGG 1 cut(s) 604
HgaI GACGC 1 cut(s) 1766
HhaI GCGC 5 cut(s) 7, 330, 537, 1647, 2031
Hin6I GCGC 5 cut(s) 5, 328, 535, 1645, 2029
HinP1I GCGC 5 cut(s) 5, 328, 535, 1645, 2029
HincII GTYRAC 2 cut(s) 517, 1515
HindII GTYRAC 2 cut(s) 517, 1515
HindIII AAGCTT 2 cut(s) 1676, 1934
HpaII CCGG 1 cut(s) 604
HphI GGTGA 7 cut(s) 71, 560, 829, 1027, 1231, 1841, 2015
Hpy166II GTNNAC 3 cut(s) 216, 517, 1515
Hpy188I TCNGA 7 cut(s) 366, 372, 1022, 1476, 1852, 1893, 1978
Hpy188III TCNNGA 9 cut(s) 281, 335, 420, 584, 640, 1362, 1574, 1744, 2038
Hpy8I GTNNAC 3 cut(s) 216, 517, 1515
Hpy99I CGWCG 1 cut(s) 426
HpyAV CCTTC 6 cut(s) 44, 795, 1425, 1847, 1990, 2035
HpyCH4III ACNGT 4 cut(s) 73, 1105, 1812, 1912
HpyF10VI GCNNNNNNNGC 6 cut(s) 102, 202, 1000, 1078, 1167, 1530
HpyF3I CTNAG 7 cut(s) 282, 304, 495, 627, 879, 1019, 1937
HspAI GCGC 5 cut(s) 5, 328, 535, 1645, 2029
KflI GGGWCCC 1 cut(s) 949
Ksp22I TGATCA 1 cut(s) 1087
Kzo9I GATC 7 cut(s) 76, 277, 580, 806, 1087, 1654, 1957
LguI GCTCTTC 1 cut(s) 1893
LmnI GCTCC 3 cut(s) 988, 1636, 1916
LweI GCATC 6 cut(s) 183, 654, 690, 1394, 1618, 1713
MabI ACCWGGT 2 cut(s) 652, 1293
MaeI CTAG 5 cut(s) 918, 995, 1065, 1530, 1662
MaeIII GTNAC 8 cut(s) 474, 710, 750, 837, 1285, 1664, 1897, 2003
MalI GATC 7 cut(s) 78, 279, 582, 808, 1089, 1656, 1959
MboI GATC 7 cut(s) 76, 277, 580, 806, 1087, 1654, 1957
MflI RGATCY 2 cut(s) 277, 806
MhlI GDGCHC 2 cut(s) 57, 1888
MluCI AATT 7 cut(s) 209, 387, 465, 1312, 1352, 1751, 1971
MlyI GAGTC 3 cut(s) 439, 882, 1009
MmeI TCCRAC 2 cut(s) 954, 1533
Mph1103I ATGCAT 1 cut(s) 111
MseI TTAA 6 cut(s) 528, 1377, 1500, 1605, 1754, 1953
MslI CAYNNNNRTG 1 cut(s) 41
MspI CCGG 1 cut(s) 604
MspR9I CCNGG 7 cut(s) 654, 945, 1039, 1099, 1185, 1295, 1769
Mva1269I GAATGC 1 cut(s) 1483
MvaI CCWGG 7 cut(s) 654, 945, 1039, 1099, 1185, 1295, 1769
MvnI CGCG 2 cut(s) 330, 1259
MwoI GCNNNNNNNGC 6 cut(s) 102, 202, 1000, 1078, 1167, 1530
NdeI CATATG 1 cut(s) 1693
NdeII GATC 7 cut(s) 76, 277, 580, 806, 1087, 1654, 1957
NlaIV GGNNCC 9 cut(s) 63, 157, 885, 902, 942, 950, 951, 1043, 1766
NmeAIII GCCGAG 1 cut(s) 753
NmuCI GTSAC 3 cut(s) 474, 1897, 2003
NsiI ATGCAT 1 cut(s) 111
NspI RCATGY 2 cut(s) 109, 1932
PaeI GCATGC 1 cut(s) 109
PaeR7I CTCGAG 1 cut(s) 640
PaqCI CACCTGC 1 cut(s) 536
PciI ACATGT 1 cut(s) 1928
PciSI GCTCTTC 1 cut(s) 1893
PcsI WCGNNNNNNNCGW 1 cut(s) 36
PctI GAATGC 1 cut(s) 1483
PfeI GAWTC 8 cut(s) 367, 429, 461, 738, 977, 1030, 1566, 1577
PfoI TCCNGGA 1 cut(s) 1767
PleI GAGTC 3 cut(s) 439, 881, 1009
PpsI GAGTC 3 cut(s) 439, 881, 1009
PpuMI RGGWCCY 2 cut(s) 941, 949
PscI ACATGT 1 cut(s) 1928
PshBI ATTAAT 1 cut(s) 1754
Psp5II RGGWCCY 2 cut(s) 941, 949
Psp6I CCWGG 7 cut(s) 652, 943, 1037, 1097, 1183, 1293, 1767
PspGI CCWGG 7 cut(s) 652, 943, 1037, 1097, 1183, 1293, 1767
PspN4I GGNNCC 9 cut(s) 63, 157, 885, 902, 942, 950, 951, 1043, 1766
PspPI GGNCC 5 cut(s) 155, 941, 949, 1041, 1370
PspPPI RGGWCCY 2 cut(s) 941, 949
PstI CTGCAG 4 cut(s) 490, 547, 1395, 1644
PstNI CAGNNNCTG 1 cut(s) 494
PsuI RGATCY 2 cut(s) 277, 806
RsaI GTAC 7 cut(s) 223, 321, 1256, 1407, 1462, 1561, 1909
RsaNI GTAC 7 cut(s) 222, 320, 1255, 1406, 1461, 1560, 1908
RseI CAYNNNNRTG 1 cut(s) 41
SapI GCTCTTC 1 cut(s) 1893
SaqAI TTAA 6 cut(s) 528, 1377, 1500, 1605, 1754, 1953
Sau3AI GATC 7 cut(s) 76, 277, 580, 806, 1087, 1654, 1957
Sau96I GGNCC 5 cut(s) 155, 941, 949, 1041, 1370
SbfI CCTGCAGG 1 cut(s) 547
ScaI AGTACT 1 cut(s) 223
SchI GAGTC 3 cut(s) 439, 882, 1009
ScrFI CCNGG 7 cut(s) 654, 945, 1039, 1099, 1185, 1295, 1769
SdaI CCTGCAGG 1 cut(s) 547
SduI GDGCHC 2 cut(s) 57, 1888
SexAI ACCWGGT 2 cut(s) 652, 1293
SfaNI GCATC 6 cut(s) 183, 654, 690, 1394, 1618, 1713
SfcI CTRYAG 5 cut(s) 486, 543, 1391, 1640, 2069
Sfr274I CTCGAG 1 cut(s) 640
SinI GGWCC 5 cut(s) 155, 941, 949, 1041, 1370
SlaI CTCGAG 1 cut(s) 640
SmiMI CAYNNNNRTG 1 cut(s) 41
SmlI CTYRAG 4 cut(s) 640, 1670, 1712, 1986
SmoI CTYRAG 4 cut(s) 640, 1670, 1712, 1986
SpeI ACTAGT 1 cut(s) 1064
SphI GCATGC 1 cut(s) 109
Sse8387I CCTGCAGG 1 cut(s) 547
Sse9I AATT 7 cut(s) 209, 387, 465, 1312, 1352, 1751, 1971
SsiI CCGC 3 cut(s) 887, 1121, 1879
SspMI CTAG 5 cut(s) 918, 995, 1065, 1530, 1662
StyD4I CCNGG 7 cut(s) 652, 943, 1037, 1097, 1183, 1293, 1767
StyI CCWWGG 3 cut(s) 262, 917, 1242
TaaI ACNGT 4 cut(s) 73, 1105, 1812, 1912
TaqI TCGA 8 cut(s) 9, 30, 39, 75, 247, 421, 641, 1429
TasI AATT 7 cut(s) 209, 387, 465, 1312, 1352, 1751, 1971
TatI WGTACW 2 cut(s) 221, 1907
TfiI GAWTC 8 cut(s) 367, 429, 461, 738, 977, 1030, 1566, 1577
Tru1I TTAA 6 cut(s) 528, 1377, 1500, 1605, 1754, 1953
Tru9I TTAA 6 cut(s) 528, 1377, 1500, 1605, 1754, 1953
TscAI CASTG 2 cut(s) 854, 1417
TseFI GTSAC 3 cut(s) 474, 1897, 2003
Tsp45I GTSAC 3 cut(s) 474, 1897, 2003
TspGWI ACGGA 1 cut(s) 913
TspRI CASTG 2 cut(s) 854, 1417
VpaK11BI GGWCC 5 cut(s) 155, 941, 949, 1041, 1370
VspI ATTAAT 1 cut(s) 1754
XapI RAATTY 3 cut(s) 387, 1312, 1971
XceI RCATGY 2 cut(s) 109, 1932
XcmI CCANNNNNNNNNTGG 1 cut(s) 89
XhoI CTCGAG 1 cut(s) 640
XmaJI CCTAGG 1 cut(s) 917
XmiI GTMKAC 1 cut(s) 215
XspI CTAG 5 cut(s) 918, 995, 1065, 1530, 1662
ZrmI AGTACT 1 cut(s) 223
Zsp2I ATGCAT 1 cut(s) 111
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.