Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002341

Physical Location & Seq

Genomic Coordinates Reverse (-)

2477635 .. 2478947

Gene Structure 1313 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG034200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 756 bp

ATGGCGATCGAAGAAAGTAACGCAGTTACGACATCTGTGTTGATCGAAGACATCGACATGGAAGAAGCGCACAAGGAACCATCCACAGTCGATCGGGATGACCAGATTTTGAAGCTTGATTTTTCAGAAAGAATGCAGATATACGATGATGACGAAAGCATACTGGAAGGAATCAGCATACATGATGAGAGTCAGTGGATACATAATCAACTTGAACCTTTGTTTGGTTCAATAAGCAGGGATGACATCTTCAGGTTTTTGCAGATGCACCATGTGCAAAAATTGGATATTCCCTTCATTGCTATGTACCGAAAAGAGGACTGCCTTAGCTTACTGAAAGATCCTGAACAGCCTGAAGAAGAAAAATCTACGTTAAAGTGGCACAAGGTACTGTGGGCCATTCAGGAATTGCACAAAAAGTGGCTGCTGTTTCAGAATCAGAAAAGGGCATTGCAATTTCACTACAATAAGCGCTTTGAGGAAGAATCTCGACGAGGACTCTTACATGATGAGACTCCACAGCTTTTTGAATCAATTATGAAGTCACTCCGAGCCGCAGAGTCAGAGAGAGAGGTCGAGGATGTCAACAGCAAGTTTAACTTGCATTTCCCTGCAGGTGAGGGTCAGGCTGCTATTGATATCAGTAGTGATCCAGGTGTGAGGAAGTATGTCCGCAGCAATTACTTTGATTTCGTTGAAGTATCAGTCACGAGCACAAAACCTGGCTTATATATGGATTGTCAAAAAGGCAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000018 GO:0000785 GO:0000988 GO:0000990 GO:0000991 GO:0002637 GO:0002682 GO:0002694 GO:0002697 GO:0002700 GO:0002703 GO:0002706 GO:0002712 GO:0002819 GO:0002822 GO:0002889 GO:0003006 GO:0003674 GO:0003682 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006325 GO:0006338 GO:0006342 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009506 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0010793 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030054 GO:0031056 GO:0031057 GO:0031060 GO:0031061 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031491 GO:0031974 GO:0031981 GO:0032239 GO:0032268 GO:0032269 GO:0032386 GO:0032501 GO:0032502 GO:0032774 GO:0032784 GO:0032786 GO:0032879 GO:0032880 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0033157 GO:0034243 GO:0034641 GO:0034645 GO:0034654 GO:0034728 GO:0035327 GO:0040029 GO:0042393 GO:0042789 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0043954 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045191 GO:0045595 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0046822 GO:0046825 GO:0046831 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050684 GO:0050776 GO:0050789 GO:0050793 GO:0050794 GO:0050864 GO:0050865 GO:0051049 GO:0051052 GO:0051128 GO:0051129 GO:0051147 GO:0051171 GO:0051172 GO:0051173 GO:0051223 GO:0051239 GO:0051246 GO:0051248 GO:0051249 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0055044 GO:0060255 GO:0060341 GO:0061085 GO:0061086 GO:0061458 GO:0065007 GO:0070013 GO:0070201 GO:0070827 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090087 GO:0090304 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902275 GO:1902679 GO:1902680 GO:1903311 GO:1903506 GO:1903507 GO:1903508 GO:1903827 GO:1905268 GO:2000026 GO:2000112 GO:2000113 GO:2000197 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DLD HHH_7 HTH_44 SH2_2 SPT6_acidic YqgF

Protein Analysis

251

Amino Acids

29.46

Weight (kDa)

4.91

Isoelectric Point (pI)

61.05

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002341)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63210
fragaria_vesca	FvH4_1g02481 FvH4_1g02810
rosa_chinensis	RchiOBHm_Chr2g0087471 RchiOBHm_Chr2g0087481 RchiOBHm_Chr2g0087901 RchiOBHm_Chr2g0087911 RchiOBHm_Chr2g0087921 RchiOBHm_Chr2g0087931
rosa_laevigata	RLG00000015871 RLG00000015872 RLG00000015911 RLG00000015912
rosa_multiflora	Rmu_sc0006064.1_g000017 Rmu_sc0008385.1_g000023 Rmu_sc0013931.1_g000008 Rmu_sc0014136.1_g000012
rosa_roxburghii	Rroxscaffold_2G00153120 Rroxscaffold_2G00153130
rosa_rugosa	Rorug01G0475800.1 Rorug01G0479400 Rorug01G0479700
rosa_samantha	Rh2AG029200 Rh2AG029300 Rh2AG034100 Rh2AG034200 Rh2AG034500 Rh2BG029400 Rh2BG033300 Rh2BG033400 Rh2BG033500 Rh2CG029400 Rh2CG034000 Rh2CG034200 Rh2CG034500 Rh2DG029200 Rh2DG033700 Rh2DG033900 Rh2DG034200
rosa_wichuraiana	Rw2G002320 Rw2G002680 Rw2G002690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	605
Acc36I	ACCTGC	1 cut(s)	605
AciI	CCGC	2 cut(s)	555, 673
AclWI	GGATC	2 cut(s)	335, 644
AcuI	CTGAAG	2 cut(s)	235, 375
AdeI	CACNNNGTG	1 cut(s)	274
AfaI	GTAC	2 cut(s)	308, 390
AfeI	AGCGCT	1 cut(s)	473
AfiI	CCNNNNNNNGG	2 cut(s)	224, 316
AgsI	TTSAA	5 cut(s)	112, 215, 231, 530, 698
AjnI	CCWGG	2 cut(s)	652, 721
AjuI	GAANNNNNNNTTGG	2 cut(s)	207, 239
AluBI	AGCT	3 cut(s)	115, 330, 523
AluI	AGCT	3 cut(s)	115, 330, 523
Alw21I	GWGCWC	1 cut(s)	716
Alw26I	GTCTC	1 cut(s)	506
AlwI	GGATC	2 cut(s)	335, 644
Aor51HI	AGCGCT	1 cut(s)	473
AoxI	GGCC	1 cut(s)	396
ApeKI	GCWGC	3 cut(s)	424, 629, 675
AspLEI	GCGC	2 cut(s)	70, 474
AspS9I	GGNCC	1 cut(s)	396
AsuHPI	GGTGA	1 cut(s)	629
BauI	CACGAG	1 cut(s)	709
BbsI	GAAGAC	1 cut(s)	54
Bbv12I	GWGCWC	1 cut(s)	716
BbvI	GCAGC	3 cut(s)	411, 616, 687
BccI	CCATC	1 cut(s)	88
BciT130I	CCWGG	2 cut(s)	654, 723
BciVI	GTATCC	1 cut(s)	192
BcoDI	GTCTC	1 cut(s)	506
BfmI	CTRYAG	1 cut(s)	612
BfoI	RGCGCY	1 cut(s)	475
BfuAI	ACCTGC	1 cut(s)	605
BfuI	GTATCC	1 cut(s)	192
BisI	GCNGC	4 cut(s)	425, 555, 630, 676
BlsI	GCNGC	4 cut(s)	426, 556, 631, 677
Bme1390I	CCNGG	2 cut(s)	654, 723
BmgT120I	GGNCC	1 cut(s)	396
BmiI	GGNNCC	1 cut(s)	78
BmrFI	CCNGG	2 cut(s)	654, 723
BmsI	GCATC	1 cut(s)	255
BpiI	GAAGAC	1 cut(s)	54
Bpu10I	CCTNAGC	1 cut(s)	326
Bsc4I	CCNNNNNNNGG	2 cut(s)	224, 316
Bse1I	ACTGG	1 cut(s)	168
Bse3DI	GCAATG	2 cut(s)	297, 449
BseBI	CCWGG	2 cut(s)	654, 723
BseGI	GGATG	4 cut(s)	80, 103, 247, 586
BseLI	CCNNNNNNNGG	2 cut(s)	224, 316
BseMI	GCAATG	2 cut(s)	297, 449
BseNI	ACTGG	1 cut(s)	168
BseXI	GCAGC	3 cut(s)	411, 616, 687
Bsh1285I	CGRYCG	2 cut(s)	9, 94
BshFI	GGCC	1 cut(s)	398
BsiEI	CGRYCG	2 cut(s)	9, 94
BsiHKAI	GWGCWC	1 cut(s)	716
BslI	CCNNNNNNNGG	2 cut(s)	224, 316
BsmAI	GTCTC	1 cut(s)	506
BsmI	GAATGC	1 cut(s)	138
BsnI	GGCC	1 cut(s)	398
Bsp1286I	GDGCHC	1 cut(s)	716
Bsp143I	GATC	5 cut(s)	6, 42, 91, 340, 649
BspACI	CCGC	2 cut(s)	555, 673
BspANI	GGCC	1 cut(s)	398
BspLI	GGNNCC	1 cut(s)	78
BspMAI	CTGCAG	1 cut(s)	616
BspMI	ACCTGC	1 cut(s)	605
BspPI	GGATC	2 cut(s)	335, 644
BsrDI	GCAATG	2 cut(s)	297, 449
BsrI	ACTGG	1 cut(s)	168
BssMI	GATC	5 cut(s)	6, 42, 91, 340, 649
BssSI	CACGAG	1 cut(s)	709
Bst2BI	CACGAG	1 cut(s)	709
Bst2UI	CCWGG	2 cut(s)	654, 723
Bst4CI	ACNGT	2 cut(s)	88, 393
BstAPI	GCANNNNNTGC	1 cut(s)	274
BstDEI	CTNAG	1 cut(s)	326
BstF5I	GGATG	4 cut(s)	80, 103, 247, 586
BstH2I	RGCGCY	1 cut(s)	475
BstHHI	GCGC	2 cut(s)	70, 474
BstKTI	GATC	5 cut(s)	9, 45, 94, 343, 652
BstMAI	GTCTC	1 cut(s)	506
BstMBI	GATC	5 cut(s)	6, 42, 91, 340, 649
BstMCI	CGRYCG	2 cut(s)	9, 94
BstMWI	GCNNNNNNNGC	1 cut(s)	274
BstNI	CCWGG	2 cut(s)	654, 723
BstSCI	CCNGG	2 cut(s)	652, 721
BstSFI	CTRYAG	1 cut(s)	612
BstV1I	GCAGC	3 cut(s)	411, 616, 687
BstV2I	GAAGAC	1 cut(s)	54
BstX2I	RGATCY	1 cut(s)	340
BstYI	RGATCY	1 cut(s)	340
BsuI	GTATCC	1 cut(s)	192
BsuRI	GGCC	1 cut(s)	398
BtsCI	GGATG	4 cut(s)	80, 103, 247, 586
BtsIMutI	CAGTG	1 cut(s)	200
BveI	ACCTGC	1 cut(s)	605
CfoI	GCGC	2 cut(s)	70, 474
Cfr13I	GGNCC	1 cut(s)	396
Csp6I	GTAC	2 cut(s)	307, 389
CviAII	CATG	4 cut(s)	58, 182, 272, 506
CviJI	RGCY	9 cut(s)	115, 330, 352, 398, 424, 523, 554, 629, 726
CviKI_1	RGCY	9 cut(s)	115, 330, 352, 398, 424, 523, 554, 629, 726
CviQI	GTAC	2 cut(s)	307, 389
DdeI	CTNAG	1 cut(s)	326
DpnI	GATC	5 cut(s)	8, 44, 93, 342, 651
DpnII	GATC	5 cut(s)	6, 42, 91, 340, 649
DraIII	CACNNNGTG	1 cut(s)	274
Eco32I	GATATC	1 cut(s)	640
Eco47III	AGCGCT	1 cut(s)	473
Eco57I	CTGAAG	2 cut(s)	235, 375
EcoRII	CCWGG	2 cut(s)	652, 721
EcoRV	GATATC	1 cut(s)	640
FaeI	CATG	4 cut(s)	61, 185, 275, 509
FalI	AAGNNNNNCTT	2 cut(s)	584, 616
FatI	CATG	4 cut(s)	57, 181, 271, 505
Fnu4HI	GCNGC	4 cut(s)	425, 555, 630, 676
FokI	GGATG	4 cut(s)	67, 110, 254, 593
Fsp4HI	GCNGC	4 cut(s)	425, 555, 630, 676
GlaI	GCGC	2 cut(s)	69, 473
GluI	GCNGC	4 cut(s)	425, 555, 630, 676
HaeII	RGCGCY	1 cut(s)	475
HaeIII	GGCC	1 cut(s)	398
HhaI	GCGC	2 cut(s)	70, 474
Hin1II	CATG	4 cut(s)	61, 185, 275, 509
Hin6I	GCGC	2 cut(s)	68, 472
HinP1I	GCGC	2 cut(s)	68, 472
HincII	GTYRAC	1 cut(s)	586
HindII	GTYRAC	1 cut(s)	586
HindIII	AAGCTT	1 cut(s)	113
HinfI	GANTC	8 cut(s)	171, 190, 436, 485, 498, 514, 530, 560
HphI	GGTGA	1 cut(s)	629
Hpy166II	GTNNAC	1 cut(s)	586
Hpy188I	TCNGA	5 cut(s)	127, 435, 441, 551, 565
Hpy188III	TCNNGA	5 cut(s)	95, 344, 404, 489, 709
Hpy8I	GTNNAC	1 cut(s)	586
Hpy99I	CGWCG	1 cut(s)	495
HpyAV	CCTTC	2 cut(s)	161, 304
HpyCH4III	ACNGT	2 cut(s)	88, 393
HpyCH4IV	ACGT	1 cut(s)	371
HpyCH4V	TGCA	8 cut(s)	136, 262, 268, 277, 412, 454, 604, 614
HpyF10VI	GCNNNNNNNGC	1 cut(s)	274
HpyF3I	CTNAG	1 cut(s)	326
HpySE526I	ACGT	1 cut(s)	371
Hsp92II	CATG	4 cut(s)	61, 185, 275, 509
HspAI	GCGC	2 cut(s)	68, 472
Kzo9I	GATC	5 cut(s)	6, 42, 91, 340, 649
Lsp1109I	GCAGC	3 cut(s)	411, 616, 687
LweI	GCATC	1 cut(s)	255
MaeII	ACGT	1 cut(s)	371
MaeIII	GTNAC	4 cut(s)	17, 25, 543, 706
MalI	GATC	5 cut(s)	8, 44, 93, 342, 651
MboI	GATC	5 cut(s)	6, 42, 91, 340, 649
MboII	GAAGA	7 cut(s)	23, 59, 74, 241, 368, 371, 494
MfeI	CAATTG	1 cut(s)	751
MflI	RGATCY	1 cut(s)	340
MhlI	GDGCHC	1 cut(s)	716
MluCI	AATT	6 cut(s)	281, 407, 455, 534, 679, 751
MlyI	GAGTC	4 cut(s)	199, 492, 508, 569
MnlI	CCTC	7 cut(s)	310, 472, 488, 565, 571, 613, 654
MseI	TTAA	2 cut(s)	374, 597
MslI	CAYNNNNRTG	2 cut(s)	56, 302
MspR9I	CCNGG	2 cut(s)	654, 723
MunI	CAATTG	1 cut(s)	751
Mva1269I	GAATGC	1 cut(s)	138
MvaI	CCWGG	2 cut(s)	654, 723
MwoI	GCNNNNNNNGC	1 cut(s)	274
NdeII	GATC	5 cut(s)	6, 42, 91, 340, 649
NlaIII	CATG	4 cut(s)	61, 185, 275, 509
NlaIV	GGNNCC	1 cut(s)	78
NmuCI	GTSAC	2 cut(s)	543, 706
PaqCI	CACCTGC	1 cut(s)	605
PcsI	WCGNNNNNNNCGW	2 cut(s)	51, 150
PctI	GAATGC	1 cut(s)	138
PfeI	GAWTC	4 cut(s)	171, 436, 485, 530
PkrI	GCNGC	4 cut(s)	426, 556, 631, 677
Ple19I	CGATCG	2 cut(s)	9, 94
PleI	GAGTC	4 cut(s)	198, 492, 508, 568
PpsI	GAGTC	4 cut(s)	198, 492, 508, 568
Psp6I	CCWGG	2 cut(s)	652, 721
PspGI	CCWGG	2 cut(s)	652, 721
PspN4I	GGNNCC	1 cut(s)	78
PspPI	GGNCC	1 cut(s)	396
PstI	CTGCAG	1 cut(s)	616
PsuI	RGATCY	1 cut(s)	340
PvuI	CGATCG	2 cut(s)	9, 94
RsaI	GTAC	2 cut(s)	308, 390
RsaNI	GTAC	2 cut(s)	307, 389
RseI	CAYNNNNRTG	2 cut(s)	56, 302
SaqAI	TTAA	2 cut(s)	374, 597
SatI	GCNGC	4 cut(s)	425, 555, 630, 676
Sau3AI	GATC	5 cut(s)	6, 42, 91, 340, 649
Sau96I	GGNCC	1 cut(s)	396
SbfI	CCTGCAGG	1 cut(s)	616
SchI	GAGTC	4 cut(s)	199, 492, 508, 569
ScrFI	CCNGG	2 cut(s)	654, 723
SdaI	CCTGCAGG	1 cut(s)	616
SduI	GDGCHC	1 cut(s)	716
SfaNI	GCATC	1 cut(s)	255
SfcI	CTRYAG	1 cut(s)	612
SmiMI	CAYNNNNRTG	2 cut(s)	56, 302
Sse8387I	CCTGCAGG	1 cut(s)	616
Sse9I	AATT	6 cut(s)	281, 407, 455, 534, 679, 751
SsiI	CCGC	2 cut(s)	555, 673
StyD4I	CCNGG	2 cut(s)	652, 721
TaaI	ACNGT	2 cut(s)	88, 393
TaiI	ACGT	1 cut(s)	374
TaqI	TCGA	6 cut(s)	9, 45, 54, 90, 490, 576
TasI	AATT	6 cut(s)	281, 407, 455, 534, 679, 751
TauI	GCSGC	1 cut(s)	557
TfiI	GAWTC	4 cut(s)	171, 436, 485, 530
Tru1I	TTAA	2 cut(s)	374, 597
Tru9I	TTAA	2 cut(s)	374, 597
TscAI	CASTG	1 cut(s)	200
TseFI	GTSAC	2 cut(s)	543, 706
TseI	GCWGC	3 cut(s)	424, 629, 675
Tsp45I	GTSAC	2 cut(s)	543, 706
TspDTI	ATGAA	2 cut(s)	286, 554
TspRI	CASTG	1 cut(s)	200

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.