FvH4_1g02481

Zinc finger MYM-type protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb1
OG0002341
Physical Location & Seq
Forward (+)
1387118 .. 1388748
1631 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_1g02481.t1

Sequence Viewer

Length: 1212 bp
ATGACTCTTGTTGCCTCAACTAAAGCACTTTTACAAAGATTGAGAGATGATGGATGTGATCATATACTTATTGAGGTGAGTTCTTTTTGTGAGGCACGCAACATACCACTACCTAACATGAATGCACGTTATGTTGATAGAGAAGGTAAAGCCCGTGGTCAGCAAGATAACTTTACTATTAAGCATCATTATCAGGTTGACATTTTTAATTCTGCAATTAACTCTCAATTGCAAGAACTGAATAGCCGATTCAATGAGAATGTGGTGAAGTTGATTGTCCTCTGTTCAGCTTTAGATACCCGTGAAATTTGTAAGTCTTTTAGAATTGATGATGTTTATGAATTAATAGACAAATTCTATCCAAAAGACTTTGAAGATCATGAGAAGGCGCGTCTGAAAATACAACTTCAACATTTTTACAATGATGTGATTCGACTTCCGGAATTCAAGGCTTTGTTAACTATTTCTGCGATGGCTCAATGGCTTGTGAATACTAGAAGATCAATTGCATACCATCTGCAGTCGTTGGTAACATCTGGATGCGCACTATCTGAACGGAGGGAGTTTGTTACATTGCACCATCTTGGTGAAAAGGTGTTTGATAATGCAGTCGGTTTCTTGCGTGTTCGGCCTAGTAGCAGCAGCAGCAACCAATTTCCTGATCTGTTGGATGATACAAGAATACATCCAGAATCCTATATTCTTGCTCAGGAATTGGTGAAGGAGGTTTATAATGACAAGGATGCTTTACAGTGCATTAGGGACCAACCTGGTTACCTTCAAAGGCTTGACATTGAAGCATATGCTAGAAGCAAGCAACTTGAGGATAAGATGCAAACTTTGTGTGATATAAGGAAAGAATTAATACAGGGTTTTCAGGATCCGAGGAAAGAGTGGGAAGAACTAGGTGTTGATGAGGTCTTTCATCTGGCTACTGGTTTAAATGATGATGCCATTTGTGAAGGACGAACTGTGCAGGCAAGGGTGTACTCGGTGTCTTTTGTTGGTGCAAATTGTGTTACTGAAGTTGGATTGGTGGGTACGCTTCGAAGAGAAGACTATTCAGATGATGGAAGGCGTAGTAGAGGCTTGAATAAAAAGCTGAAGACTGGTGATGTGATCACTTGCAAGATCAAAACTGTTAAGAAGATGTACTTTCCCTTTGAGATAGTACTTAGTTACGATGCCTTCCTTCAACAGATTCAACAGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DUF4371 Dimer_Tnp_hAT

Protein Analysis

404

Amino Acids

46.52

Weight (kDa)

6.11

Isoelectric Point (pI)

46.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HHH_9 PF17674 222 - 296 1e-09 HHH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 732
Acc16I TGCGCA 1 cut(s) 544
AccII CGCG 1 cut(s) 391
AccIII TCCGGA 1 cut(s) 439
AclWI GGATC 2 cut(s) 875, 888
AcsI RAATTY 3 cut(s) 306, 353, 443
AcuI CTGAAG 2 cut(s) 1044, 1124
AfaI GTAC 4 cut(s) 989, 1042, 1154, 1173
AgsI TTSAA 9 cut(s) 253, 374, 410, 448, 782, 797, 1093, 1196, 1205
AjnI CCWGG 1 cut(s) 769
AluBI AGCT 2 cut(s) 290, 1102
AluI AGCT 2 cut(s) 290, 1102
AlwI GGATC 2 cut(s) 875, 888
Aor13HI TCCGGA 1 cut(s) 439
AoxI GGCC 1 cut(s) 629
ApeKI GCWGC 3 cut(s) 639, 642, 645
ApoI RAATTY 3 cut(s) 306, 353, 443
AseI ATTAAT 2 cut(s) 344, 863
AspLEI GCGC 2 cut(s) 391, 545
AspS9I GGNCC 1 cut(s) 763
AsuHPI GGTGA 5 cut(s) 88, 277, 599, 730, 1124
AsuII TTCGAA 1 cut(s) 1048
AvaII GGWCC 1 cut(s) 763
BamHI GGATCC 1 cut(s) 880
BbsI GAAGAC 2 cut(s) 1062, 1112
BbvI GCAGC 3 cut(s) 651, 654, 657
BccI CCATC 5 cut(s) 44, 466, 522, 588, 1064
BciT130I CCWGG 1 cut(s) 771
BclI TGATCA 2 cut(s) 58, 1119
BfaI CTAG 4 cut(s) 495, 633, 807, 905
BfmI CTRYAG 1 cut(s) 518
BisI GCNGC 3 cut(s) 640, 643, 646
BlsI GCNGC 3 cut(s) 641, 644, 647
BmcAI AGTACT 1 cut(s) 1173
Bme1390I CCNGG 1 cut(s) 771
Bme18I GGWCC 1 cut(s) 763
BmgT120I GGNCC 1 cut(s) 763
BmiI GGNNCC 2 cut(s) 764, 882
BmrFI CCNGG 1 cut(s) 771
BmsI GCATC 6 cut(s) 193, 530, 733, 822, 940, 1174
BpiI GAAGAC 2 cut(s) 1062, 1112
Bpu10I CCTNAGC 1 cut(s) 708
Bpu14I TTCGAA 1 cut(s) 1048
BpuEI CTTGAG 1 cut(s) 842
BsaJI CCNNGG 2 cut(s) 154, 884
BsaWI WCCGGW 1 cut(s) 439
Bse1I ACTGG 2 cut(s) 940, 1114
Bse3DI GCAATG 1 cut(s) 572
BseAI TCCGGA 1 cut(s) 439
BseBI CCWGG 1 cut(s) 771
BseDI CCNNGG 2 cut(s) 154, 884
BseGI GGATG 5 cut(s) 59, 545, 676, 685, 748
BseMI GCAATG 1 cut(s) 572
BseMII CTCAG 1 cut(s) 722
BseNI ACTGG 2 cut(s) 940, 1114
BseXI GCAGC 3 cut(s) 651, 654, 657
BsgI GTGCAG 1 cut(s) 995
Bsh1236I CGCG 1 cut(s) 391
BshFI GGCC 1 cut(s) 631
BsiSI CCGG 1 cut(s) 440
BslFI GGGAC 1 cut(s) 776
BsmFI GGGAC 1 cut(s) 776
BsmI GAATGC 1 cut(s) 127
BsnI GGCC 1 cut(s) 631
Bsp119I TTCGAA 1 cut(s) 1048
Bsp13I TCCGGA 1 cut(s) 439
Bsp143I GATC 7 cut(s) 58, 376, 500, 661, 880, 1119, 1131
BspANI GGCC 1 cut(s) 631
BspCNI CTCAG 1 cut(s) 721
BspEI TCCGGA 1 cut(s) 439
BspFNI CGCG 1 cut(s) 391
BspHI TCATGA 1 cut(s) 379
BspLI GGNNCC 2 cut(s) 764, 882
BspMAI CTGCAG 1 cut(s) 522
BspPI GGATC 2 cut(s) 875, 888
BspT104I TTCGAA 1 cut(s) 1048
BsrDI GCAATG 1 cut(s) 572
BsrI ACTGG 2 cut(s) 940, 1114
BssECI CCNNGG 2 cut(s) 154, 884
BssMI GATC 7 cut(s) 58, 376, 500, 661, 880, 1119, 1131
Bst2UI CCWGG 1 cut(s) 771
Bst4CI ACNGT 4 cut(s) 753, 973, 1141, 1209
Bst6I CTCTTC 1 cut(s) 1045
BstBI TTCGAA 1 cut(s) 1048
BstC8I GCNNGC 3 cut(s) 97, 815, 978
BstDEI CTNAG 2 cut(s) 708, 1175
BstDSI CCRYGG 1 cut(s) 154
BstEII GGTNACC 1 cut(s) 773
BstF5I GGATG 5 cut(s) 59, 545, 676, 685, 748
BstFNI CGCG 1 cut(s) 391
BstHHI GCGC 2 cut(s) 391, 545
BstKTI GATC 7 cut(s) 61, 379, 503, 664, 883, 1122, 1134
BstMBI GATC 7 cut(s) 58, 376, 500, 661, 880, 1119, 1131
BstMWI GCNNNNNNNGC 2 cut(s) 628, 645
BstNI CCWGG 1 cut(s) 771
BstPI GGTNACC 1 cut(s) 773
BstSCI CCNGG 1 cut(s) 769
BstSFI CTRYAG 1 cut(s) 518
BstUI CGCG 1 cut(s) 391
BstV1I GCAGC 3 cut(s) 651, 654, 657
BstV2I GAAGAC 2 cut(s) 1062, 1112
BstX2I RGATCY 1 cut(s) 880
BstYI RGATCY 1 cut(s) 880
BsuRI GGCC 1 cut(s) 631
BtgI CCRYGG 1 cut(s) 154
BtgZI GCGATG 1 cut(s) 485
BtsCI GGATG 5 cut(s) 59, 545, 676, 685, 748
BtsIMutI CAGTG 1 cut(s) 758
Cac8I GCNNGC 3 cut(s) 97, 815, 978
CciI TCATGA 1 cut(s) 379
CfoI GCGC 2 cut(s) 391, 545
Cfr13I GGNCC 1 cut(s) 763
CseI GACGC 1 cut(s) 380
CsiI ACCWGGT 1 cut(s) 769
Csp6I GTAC 4 cut(s) 988, 1041, 1153, 1172
CviAII CATG 2 cut(s) 118, 380
CviQI GTAC 4 cut(s) 988, 1041, 1153, 1172
DdeI CTNAG 2 cut(s) 708, 1175
DpnI GATC 7 cut(s) 60, 378, 502, 663, 882, 1121, 1133
DpnII GATC 7 cut(s) 58, 376, 500, 661, 880, 1119, 1131
DraI TTTAAA 1 cut(s) 942
Eam1104I CTCTTC 1 cut(s) 1045
EarI CTCTTC 1 cut(s) 1045
Eco47I GGWCC 1 cut(s) 763
Eco57I CTGAAG 2 cut(s) 1044, 1124
Eco91I GGTNACC 1 cut(s) 773
EcoO65I GGTNACC 1 cut(s) 773
EcoRI GAATTC 1 cut(s) 443
EcoRII CCWGG 1 cut(s) 769
FaeI CATG 2 cut(s) 121, 383
FalI AAGNNNNNCTT 2 cut(s) 1139, 1171
FaqI GGGAC 1 cut(s) 776
FatI CATG 2 cut(s) 117, 379
FauNDI CATATG 1 cut(s) 802
FbaI TGATCA 2 cut(s) 58, 1119
Fnu4HI GCNGC 3 cut(s) 640, 643, 646
FokI GGATG 5 cut(s) 66, 552, 672, 683, 755
Fsp4HI GCNGC 3 cut(s) 640, 643, 646
FspAI RTGCGCAY 1 cut(s) 544
FspBI CTAG 4 cut(s) 495, 633, 807, 905
FspI TGCGCA 1 cut(s) 544
GlaI GCGC 2 cut(s) 390, 544
GluI GCNGC 3 cut(s) 640, 643, 646
HaeIII GGCC 1 cut(s) 631
HapII CCGG 1 cut(s) 440
HgaI GACGC 1 cut(s) 380
HhaI GCGC 2 cut(s) 391, 545
Hin1II CATG 2 cut(s) 121, 383
Hin6I GCGC 2 cut(s) 389, 543
HinP1I GCGC 2 cut(s) 389, 543
HincII GTYRAC 2 cut(s) 199, 459
HindII GTYRAC 2 cut(s) 199, 459
HinfI GANTC 5 cut(s) 4, 249, 430, 692, 1201
HpaI GTTAAC 1 cut(s) 459
HpaII CCGG 1 cut(s) 440
HphI GGTGA 5 cut(s) 88, 277, 599, 730, 1124
Hpy166II GTNNAC 3 cut(s) 199, 459, 988
Hpy188I TCNGA 4 cut(s) 396, 553, 885, 1066
Hpy188III TCNNGA 7 cut(s) 380, 440, 537, 659, 689, 710, 878
Hpy8I GTNNAC 3 cut(s) 199, 459, 988
HpyAV CCTTC 8 cut(s) 137, 379, 715, 788, 956, 1068, 1198, 1202
HpyCH4III ACNGT 4 cut(s) 753, 973, 1141, 1209
HpyCH4IV ACGT 1 cut(s) 127
HpyF10VI GCNNNNNNNGC 2 cut(s) 628, 645
HpyF3I CTNAG 2 cut(s) 708, 1175
HpySE526I ACGT 1 cut(s) 127
Hsp92II CATG 2 cut(s) 121, 383
HspAI GCGC 2 cut(s) 389, 543
Kpn2I TCCGGA 1 cut(s) 439
Ksp22I TGATCA 2 cut(s) 58, 1119
KspAI GTTAAC 1 cut(s) 459
Kzo9I GATC 7 cut(s) 58, 376, 500, 661, 880, 1119, 1131
Lsp1109I GCAGC 3 cut(s) 651, 654, 657
LweI GCATC 6 cut(s) 193, 530, 733, 822, 940, 1174
MabI ACCWGGT 1 cut(s) 769
MaeI CTAG 4 cut(s) 495, 633, 807, 905
MaeII ACGT 1 cut(s) 127
MaeIII GTNAC 5 cut(s) 529, 568, 773, 1018, 1178
MalI GATC 7 cut(s) 60, 378, 502, 663, 882, 1121, 1133
MboI GATC 7 cut(s) 58, 376, 500, 661, 880, 1119, 1131
MboII GAAGA 7 cut(s) 386, 510, 911, 1062, 1067, 1117, 1159
MfeI CAATTG 2 cut(s) 227, 504
MflI RGATCY 1 cut(s) 880
MmeI TCCRAC 2 cut(s) 648, 1009
MroI TCCGGA 1 cut(s) 439
MseI TTAA 8 cut(s) 180, 207, 219, 344, 458, 863, 941, 1143
MslI CAYNNNNRTG 2 cut(s) 538, 585
MspI CCGG 1 cut(s) 440
MspR9I CCNGG 1 cut(s) 771
MunI CAATTG 2 cut(s) 227, 504
Mva1269I GAATGC 1 cut(s) 127
MvaI CCWGG 1 cut(s) 771
MvnI CGCG 1 cut(s) 391
MwoI GCNNNNNNNGC 2 cut(s) 628, 645
NdeI CATATG 1 cut(s) 802
NdeII GATC 7 cut(s) 58, 376, 500, 661, 880, 1119, 1131
NlaIII CATG 2 cut(s) 121, 383
NlaIV GGNNCC 2 cut(s) 764, 882
NsbI TGCGCA 1 cut(s) 544
NspV TTCGAA 1 cut(s) 1048
PagI TCATGA 1 cut(s) 379
PctI GAATGC 1 cut(s) 127
PfeI GAWTC 4 cut(s) 249, 430, 692, 1201
PkrI GCNGC 3 cut(s) 641, 644, 647
PshBI ATTAAT 2 cut(s) 344, 863
PsiI TTATAA 1 cut(s) 732
Psp6I CCWGG 1 cut(s) 769
PspEI GGTNACC 1 cut(s) 773
PspGI CCWGG 1 cut(s) 769
PspN4I GGNNCC 2 cut(s) 764, 882
PspPI GGNCC 1 cut(s) 763
PstI CTGCAG 1 cut(s) 522
PsuI RGATCY 1 cut(s) 880
RsaI GTAC 4 cut(s) 989, 1042, 1154, 1173
RsaNI GTAC 4 cut(s) 988, 1041, 1153, 1172
RseI CAYNNNNRTG 2 cut(s) 538, 585
SaqAI TTAA 8 cut(s) 180, 207, 219, 344, 458, 863, 941, 1143
SatI GCNGC 3 cut(s) 640, 643, 646
Sau3AI GATC 7 cut(s) 58, 376, 500, 661, 880, 1119, 1131
Sau96I GGNCC 1 cut(s) 763
ScaI AGTACT 1 cut(s) 1173
ScrFI CCNGG 1 cut(s) 771
SexAI ACCWGGT 1 cut(s) 769
SfaNI GCATC 6 cut(s) 193, 530, 733, 822, 940, 1174
SfcI CTRYAG 1 cut(s) 518
SfuI TTCGAA 1 cut(s) 1048
SinI GGWCC 1 cut(s) 763
SmiMI CAYNNNNRTG 2 cut(s) 538, 585
SmlI CTYRAG 1 cut(s) 821
SmoI CTYRAG 1 cut(s) 821
SspMI CTAG 4 cut(s) 495, 633, 807, 905
StyD4I CCNGG 1 cut(s) 769
TaaI ACNGT 4 cut(s) 753, 973, 1141, 1209
TaiI ACGT 1 cut(s) 130
TaqI TCGA 2 cut(s) 433, 1048
TatI WGTACW 3 cut(s) 987, 1152, 1171
TfiI GAWTC 4 cut(s) 249, 430, 692, 1201
Tru1I TTAA 8 cut(s) 180, 207, 219, 344, 458, 863, 941, 1143
Tru9I TTAA 8 cut(s) 180, 207, 219, 344, 458, 863, 941, 1143
TscAI CASTG 1 cut(s) 758
TseI GCWGC 3 cut(s) 639, 642, 645
TspDTI ATGAA 3 cut(s) 134, 354, 914
TspGWI ACGGA 1 cut(s) 571
TspRI CASTG 1 cut(s) 758
VpaK11BI GGWCC 1 cut(s) 763
VspI ATTAAT 2 cut(s) 344, 863
XapI RAATTY 3 cut(s) 306, 353, 443
XspI CTAG 4 cut(s) 495, 633, 807, 905
ZrmI AGTACT 1 cut(s) 1173
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.