Rh2CG034200

Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2C
OG0002341
Physical Location & Seq
Reverse (-)
2624784 .. 2626178
1395 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2CG034200.1

Sequence Viewer

Length: 849 bp
ATGGCGATCGAAGAAAGTAACGCAGTTACGACATCTGTGTTGATCGAGGACATCGACATGGAAGAAGCGCACAAGGAACCATCCACAGTCGATCGGGATGACCAGATTTTGAAGCTTGATTTTTCAGAAAGAATGCAGATATACGATGATGACGAAAGCATACTGGAAGGAATCAGCATACATGATGAGAGTCAGTGGATACATAATCAACTTGAACCTTTGTTTGGTTCAATAAGCAGGGATGACATCTTCAGGTTTTTGCAGATGCACCATGTGCAAAAATTGGATATTCCCTTCATTGCTATGTACCGAAAAGAGGACTGCCTTAGCTTACTGAAAGATCCTGAACAGCCTGAAGAAGAAAAATCTACGTTAAAGTGGCACAAGGTACTGTGGGCCATTCAGGAATTGCACAAAAAGTGGCTGCTGTTTCAAAATCAGAAAAGGGCATTGCAATTTCACTACAATAAGCGCTTTGAGGAAGAATCTCGACGAGGACTCTTACATGATGAGACTCCACAGCTTTTTGAATCAATTATGAAGTCACTCCGAGCTGCAGAGTCAGAGAGAGAGGTCGAGGATGTCAACAGCAAGTTTAACTTGCATTTCCCTGCAGGTGAGGGTCAGGCTGCTATTGATGTCAGTACTGATCCAGGTGTGAGGAAGTATGTCCGCAGCAATTACTTTGATTTCGTTGAAGTATCAGTCACGAGCACAAAACCTGGCTTATATATGGATTGTCAAAAAAAGCAATTGAATAGATTTGAGGATGCACAATGGTTGCTTGTCCAAAAGGCTGAAGAGGAGAATCTTGTACAAGTTACTATTAAGCTGCCGAAGACCGTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000785 GO:0000988 GO:0000990 GO:0000991 GO:0002637 GO:0002682 GO:0002694 GO:0002697 GO:0002700 GO:0002703 GO:0002706 GO:0002712 GO:0002819 GO:0002822 GO:0002889 GO:0003006 GO:0003674 GO:0003682 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006325 GO:0006338 GO:0006342 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009506 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0010793 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030054 GO:0031056 GO:0031057 GO:0031060 GO:0031061 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031491 GO:0031974 GO:0031981 GO:0032239 GO:0032268 GO:0032269 GO:0032386 GO:0032501 GO:0032502 GO:0032774 GO:0032784 GO:0032786 GO:0032879 GO:0032880 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0033157 GO:0034243 GO:0034641 GO:0034645 GO:0034654 GO:0034728 GO:0035327 GO:0040029 GO:0042393 GO:0042789 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0043954 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045191 GO:0045595 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0046822 GO:0046825 GO:0046831 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050684 GO:0050776 GO:0050789 GO:0050793 GO:0050794 GO:0050864 GO:0050865 GO:0051049 GO:0051052 GO:0051128 GO:0051129 GO:0051147 GO:0051171 GO:0051172 GO:0051173 GO:0051223 GO:0051239 GO:0051246 GO:0051248 GO:0051249 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0055044 GO:0060255 GO:0060341 GO:0061085 GO:0061086 GO:0061458 GO:0065007 GO:0070013 GO:0070201 GO:0070827 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090087 GO:0090304 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902275 GO:1902679 GO:1902680 GO:1903311 GO:1903506 GO:1903507 GO:1903508 GO:1903827 GO:1905268 GO:2000026 GO:2000112 GO:2000113 GO:2000197 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DLD HHH_7 HTH_44 SH2_2 SPT6_acidic YqgF

Protein Analysis

282

Amino Acids

33.18

Weight (kDa)

4.97

Isoelectric Point (pI)

59.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 605
Acc36I ACCTGC 1 cut(s) 605
AciI CCGC 1 cut(s) 673
AclWI GGATC 2 cut(s) 335, 644
AcuI CTGAAG 3 cut(s) 235, 375, 819
AdeI CACNNNGTG 1 cut(s) 274
AfaI GTAC 4 cut(s) 308, 390, 646, 816
AfeI AGCGCT 1 cut(s) 473
AfiI CCNNNNNNNGG 2 cut(s) 224, 316
AgsI TTSAA 7 cut(s) 112, 215, 231, 434, 530, 698, 757
AjnI CCWGG 2 cut(s) 652, 721
AjuI GAANNNNNNNTTGG 2 cut(s) 207, 239
AluBI AGCT 5 cut(s) 115, 330, 523, 554, 832
AluI AGCT 5 cut(s) 115, 330, 523, 554, 832
Alw21I GWGCWC 1 cut(s) 716
Alw26I GTCTC 1 cut(s) 506
AlwI GGATC 2 cut(s) 335, 644
Aor51HI AGCGCT 1 cut(s) 473
AoxI GGCC 1 cut(s) 396
ApeKI GCWGC 5 cut(s) 424, 554, 629, 675, 832
AspLEI GCGC 2 cut(s) 70, 474
AspS9I GGNCC 1 cut(s) 396
AsuHPI GGTGA 1 cut(s) 629
BauI CACGAG 1 cut(s) 709
BbsI GAAGAC 1 cut(s) 845
Bbv12I GWGCWC 1 cut(s) 716
BbvI GCAGC 5 cut(s) 411, 541, 616, 687, 819
BccI CCATC 1 cut(s) 88
BciT130I CCWGG 2 cut(s) 654, 723
BciVI GTATCC 1 cut(s) 192
BcoDI GTCTC 1 cut(s) 506
BfmI CTRYAG 2 cut(s) 555, 612
BfoI RGCGCY 1 cut(s) 475
BfuAI ACCTGC 1 cut(s) 605
BfuI GTATCC 1 cut(s) 192
BisI GCNGC 5 cut(s) 425, 555, 630, 676, 833
BlsI GCNGC 5 cut(s) 426, 556, 631, 677, 834
BmcAI AGTACT 1 cut(s) 646
Bme1390I CCNGG 2 cut(s) 654, 723
BmgT120I GGNCC 1 cut(s) 396
BmiI GGNNCC 1 cut(s) 78
BmrFI CCNGG 2 cut(s) 654, 723
BmsI GCATC 2 cut(s) 255, 760
BpiI GAAGAC 1 cut(s) 845
Bpu10I CCTNAGC 1 cut(s) 326
Bsc4I CCNNNNNNNGG 2 cut(s) 224, 316
Bse1I ACTGG 1 cut(s) 168
Bse3DI GCAATG 2 cut(s) 297, 449
BseBI CCWGG 2 cut(s) 654, 723
BseGI GGATG 5 cut(s) 80, 103, 247, 586, 775
BseLI CCNNNNNNNGG 2 cut(s) 224, 316
BseMI GCAATG 2 cut(s) 297, 449
BseNI ACTGG 1 cut(s) 168
BseRI GAGGAG 1 cut(s) 818
BseXI GCAGC 5 cut(s) 411, 541, 616, 687, 819
Bsh1285I CGRYCG 2 cut(s) 9, 94
BshFI GGCC 1 cut(s) 398
BsiEI CGRYCG 2 cut(s) 9, 94
BsiHKAI GWGCWC 1 cut(s) 716
BslI CCNNNNNNNGG 2 cut(s) 224, 316
BsmAI GTCTC 1 cut(s) 506
BsmI GAATGC 1 cut(s) 138
BsnI GGCC 1 cut(s) 398
Bsp1286I GDGCHC 1 cut(s) 716
Bsp1407I TGTACA 1 cut(s) 814
Bsp143I GATC 5 cut(s) 6, 42, 91, 340, 649
BspACI CCGC 1 cut(s) 673
BspANI GGCC 1 cut(s) 398
BspLI GGNNCC 1 cut(s) 78
BspMAI CTGCAG 2 cut(s) 559, 616
BspMI ACCTGC 1 cut(s) 605
BspPI GGATC 2 cut(s) 335, 644
BsrDI GCAATG 2 cut(s) 297, 449
BsrGI TGTACA 1 cut(s) 814
BsrI ACTGG 1 cut(s) 168
BssMI GATC 5 cut(s) 6, 42, 91, 340, 649
BssSI CACGAG 1 cut(s) 709
Bst2BI CACGAG 1 cut(s) 709
Bst2UI CCWGG 2 cut(s) 654, 723
Bst4CI ACNGT 3 cut(s) 88, 393, 844
Bst6I CTCTTC 1 cut(s) 795
BstAPI GCANNNNNTGC 1 cut(s) 274
BstAUI TGTACA 1 cut(s) 814
BstDEI CTNAG 1 cut(s) 326
BstF5I GGATG 5 cut(s) 80, 103, 247, 586, 775
BstH2I RGCGCY 1 cut(s) 475
BstHHI GCGC 2 cut(s) 70, 474
BstKTI GATC 5 cut(s) 9, 45, 94, 343, 652
BstMAI GTCTC 1 cut(s) 506
BstMBI GATC 5 cut(s) 6, 42, 91, 340, 649
BstMCI CGRYCG 2 cut(s) 9, 94
BstMWI GCNNNNNNNGC 1 cut(s) 274
BstNI CCWGG 2 cut(s) 654, 723
BstSCI CCNGG 2 cut(s) 652, 721
BstSFI CTRYAG 2 cut(s) 555, 612
BstV1I GCAGC 5 cut(s) 411, 541, 616, 687, 819
BstV2I GAAGAC 1 cut(s) 845
BstX2I RGATCY 1 cut(s) 340
BstYI RGATCY 1 cut(s) 340
BsuI GTATCC 1 cut(s) 192
BsuRI GGCC 1 cut(s) 398
BtsCI GGATG 5 cut(s) 80, 103, 247, 586, 775
BtsIMutI CAGTG 1 cut(s) 200
BveI ACCTGC 1 cut(s) 605
CfoI GCGC 2 cut(s) 70, 474
Cfr13I GGNCC 1 cut(s) 396
Csp6I GTAC 4 cut(s) 307, 389, 645, 815
CviAII CATG 4 cut(s) 58, 182, 272, 506
CviQI GTAC 4 cut(s) 307, 389, 645, 815
DdeI CTNAG 1 cut(s) 326
DpnI GATC 5 cut(s) 8, 44, 93, 342, 651
DpnII GATC 5 cut(s) 6, 42, 91, 340, 649
DraIII CACNNNGTG 1 cut(s) 274
Eam1104I CTCTTC 1 cut(s) 795
EarI CTCTTC 1 cut(s) 795
Eco47III AGCGCT 1 cut(s) 473
Eco57I CTGAAG 3 cut(s) 235, 375, 819
EcoRII CCWGG 2 cut(s) 652, 721
FaeI CATG 4 cut(s) 61, 185, 275, 509
FalI AAGNNNNNCTT 2 cut(s) 584, 616
FatI CATG 4 cut(s) 57, 181, 271, 505
Fnu4HI GCNGC 5 cut(s) 425, 555, 630, 676, 833
FokI GGATG 5 cut(s) 67, 110, 254, 593, 782
Fsp4HI GCNGC 5 cut(s) 425, 555, 630, 676, 833
GlaI GCGC 2 cut(s) 69, 473
GluI GCNGC 5 cut(s) 425, 555, 630, 676, 833
HaeII RGCGCY 1 cut(s) 475
HaeIII GGCC 1 cut(s) 398
HhaI GCGC 2 cut(s) 70, 474
Hin1II CATG 4 cut(s) 61, 185, 275, 509
Hin6I GCGC 2 cut(s) 68, 472
HinP1I GCGC 2 cut(s) 68, 472
HincII GTYRAC 1 cut(s) 586
HindII GTYRAC 1 cut(s) 586
HindIII AAGCTT 1 cut(s) 113
HinfI GANTC 8 cut(s) 171, 190, 485, 498, 514, 530, 560, 808
HphI GGTGA 1 cut(s) 629
Hpy166II GTNNAC 1 cut(s) 586
Hpy188I TCNGA 5 cut(s) 127, 441, 551, 565, 848
Hpy188III TCNNGA 5 cut(s) 95, 344, 404, 489, 709
Hpy8I GTNNAC 1 cut(s) 586
Hpy99I CGWCG 1 cut(s) 495
HpyAV CCTTC 2 cut(s) 161, 304
HpyCH4III ACNGT 3 cut(s) 88, 393, 844
HpyCH4IV ACGT 1 cut(s) 371
HpyF10VI GCNNNNNNNGC 1 cut(s) 274
HpyF3I CTNAG 1 cut(s) 326
HpySE526I ACGT 1 cut(s) 371
Hsp92II CATG 4 cut(s) 61, 185, 275, 509
HspAI GCGC 2 cut(s) 68, 472
Kzo9I GATC 5 cut(s) 6, 42, 91, 340, 649
Lsp1109I GCAGC 5 cut(s) 411, 541, 616, 687, 819
LweI GCATC 2 cut(s) 255, 760
MaeII ACGT 1 cut(s) 371
MaeIII GTNAC 5 cut(s) 17, 25, 543, 706, 820
MalI GATC 5 cut(s) 8, 44, 93, 342, 651
MboI GATC 5 cut(s) 6, 42, 91, 340, 649
MboII GAAGA 7 cut(s) 23, 74, 241, 368, 371, 494, 812
MfeI CAATTG 1 cut(s) 752
MflI RGATCY 1 cut(s) 340
MhlI GDGCHC 1 cut(s) 716
MluCI AATT 6 cut(s) 281, 407, 455, 534, 679, 752
MlyI GAGTC 4 cut(s) 199, 492, 508, 569
MseI TTAA 3 cut(s) 374, 597, 828
MslI CAYNNNNRTG 2 cut(s) 56, 302
MspR9I CCNGG 2 cut(s) 654, 723
MunI CAATTG 1 cut(s) 752
Mva1269I GAATGC 1 cut(s) 138
MvaI CCWGG 2 cut(s) 654, 723
MwoI GCNNNNNNNGC 1 cut(s) 274
NdeII GATC 5 cut(s) 6, 42, 91, 340, 649
NlaIII CATG 4 cut(s) 61, 185, 275, 509
NlaIV GGNNCC 1 cut(s) 78
NmuCI GTSAC 2 cut(s) 543, 706
PaqCI CACCTGC 1 cut(s) 605
PcsI WCGNNNNNNNCGW 2 cut(s) 51, 150
PctI GAATGC 1 cut(s) 138
PfeI GAWTC 4 cut(s) 171, 485, 530, 808
PkrI GCNGC 5 cut(s) 426, 556, 631, 677, 834
Ple19I CGATCG 2 cut(s) 9, 94
PleI GAGTC 4 cut(s) 198, 492, 508, 568
PpsI GAGTC 4 cut(s) 198, 492, 508, 568
Psp6I CCWGG 2 cut(s) 652, 721
PspGI CCWGG 2 cut(s) 652, 721
PspN4I GGNNCC 1 cut(s) 78
PspPI GGNCC 1 cut(s) 396
PstI CTGCAG 2 cut(s) 559, 616
PsuI RGATCY 1 cut(s) 340
PvuI CGATCG 2 cut(s) 9, 94
RsaI GTAC 4 cut(s) 308, 390, 646, 816
RsaNI GTAC 4 cut(s) 307, 389, 645, 815
RseI CAYNNNNRTG 2 cut(s) 56, 302
SaqAI TTAA 3 cut(s) 374, 597, 828
SatI GCNGC 5 cut(s) 425, 555, 630, 676, 833
Sau3AI GATC 5 cut(s) 6, 42, 91, 340, 649
Sau96I GGNCC 1 cut(s) 396
SbfI CCTGCAGG 1 cut(s) 616
ScaI AGTACT 1 cut(s) 646
SchI GAGTC 4 cut(s) 199, 492, 508, 569
ScrFI CCNGG 2 cut(s) 654, 723
SdaI CCTGCAGG 1 cut(s) 616
SduI GDGCHC 1 cut(s) 716
SfaNI GCATC 2 cut(s) 255, 760
SfcI CTRYAG 2 cut(s) 555, 612
SmiMI CAYNNNNRTG 2 cut(s) 56, 302
Sse8387I CCTGCAGG 1 cut(s) 616
Sse9I AATT 6 cut(s) 281, 407, 455, 534, 679, 752
SsiI CCGC 1 cut(s) 673
StyD4I CCNGG 2 cut(s) 652, 721
TaaI ACNGT 3 cut(s) 88, 393, 844
TaiI ACGT 1 cut(s) 374
TaqI TCGA 6 cut(s) 9, 45, 54, 90, 490, 576
TasI AATT 6 cut(s) 281, 407, 455, 534, 679, 752
TatI WGTACW 2 cut(s) 644, 814
TfiI GAWTC 4 cut(s) 171, 485, 530, 808
Tru1I TTAA 3 cut(s) 374, 597, 828
Tru9I TTAA 3 cut(s) 374, 597, 828
TscAI CASTG 1 cut(s) 200
TseFI GTSAC 2 cut(s) 543, 706
TseI GCWGC 5 cut(s) 424, 554, 629, 675, 832
Tsp45I GTSAC 2 cut(s) 543, 706
TspDTI ATGAA 2 cut(s) 286, 554
TspRI CASTG 1 cut(s) 200
ZrmI AGTACT 1 cut(s) 646
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.