Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008385.1

Orthogroup ID

OG0002341

Physical Location & Seq

Genomic Coordinates Reverse (-)

82851 .. 83414

Gene Structure 564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008385.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 564 bp

atgcgtattcagcaacatgggttagctgctagcagcaccagcagccaatttaatgctctgttggatgatacaagaatccatccagaatcctatttgcttgcacaagaaatggccaaagacgtttatgatgataaggatgcaatggagctgcagcgcaacctcgagaagcttgacgttgaagcatatgctaaaagcaaaaaacttgagaataagatgcaaacattgtgcggcataaggagagaattaatacaggggtttcaggatgagcgtaaaacatatgaagaactagatgaagatgacatgttctatacaatgacaggtgagacttgcaccacactatctcaaggaagcattgtgcaggccatagttcgaagggctctacccaaaacaacaatttgtactgtgggagctggattgatttgtacactaaagagagaagattttacggttaatgggagggaaatttcagacttatctcaggtactgaaggtgggtgacattatcacttgcaaaatcaaacgccttcgaaagaagcgattgaatgcggaactttgtagtttgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000018 GO:0000785 GO:0000988 GO:0000990 GO:0000991 GO:0002637 GO:0002682 GO:0002694 GO:0002697 GO:0002700 GO:0002703 GO:0002706 GO:0002712 GO:0002819 GO:0002822 GO:0002889 GO:0003006 GO:0003674 GO:0003682 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006325 GO:0006338 GO:0006342 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009506 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0010793 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030054 GO:0031056 GO:0031057 GO:0031060 GO:0031061 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031491 GO:0031974 GO:0031981 GO:0032239 GO:0032268 GO:0032269 GO:0032386 GO:0032501 GO:0032502 GO:0032774 GO:0032784 GO:0032786 GO:0032879 GO:0032880 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0033157 GO:0034243 GO:0034641 GO:0034645 GO:0034654 GO:0034728 GO:0035327 GO:0040029 GO:0042393 GO:0042789 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0043954 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045191 GO:0045595 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0046822 GO:0046825 GO:0046831 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050684 GO:0050776 GO:0050789 GO:0050793 GO:0050794 GO:0050864 GO:0050865 GO:0051049 GO:0051052 GO:0051128 GO:0051129 GO:0051147 GO:0051171 GO:0051172 GO:0051173 GO:0051223 GO:0051239 GO:0051246 GO:0051248 GO:0051249 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0055044 GO:0060255 GO:0060341 GO:0061085 GO:0061086 GO:0061458 GO:0065007 GO:0070013 GO:0070201 GO:0070827 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090087 GO:0090304 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902275 GO:1902679 GO:1902680 GO:1903311 GO:1903506 GO:1903507 GO:1903508 GO:1903827 GO:1905268 GO:2000026 GO:2000112 GO:2000113 GO:2000197 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DLD HHH_7 HTH_44 SH2_2 SPT6_acidic YqgF

Protein Analysis

187

Amino Acids

21.26

Weight (kDa)

6.18

Isoelectric Point (pI)

41.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002341)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63210
fragaria_vesca	FvH4_1g02481 FvH4_1g02810
rosa_chinensis	RchiOBHm_Chr2g0087471 RchiOBHm_Chr2g0087481 RchiOBHm_Chr2g0087901 RchiOBHm_Chr2g0087911 RchiOBHm_Chr2g0087921 RchiOBHm_Chr2g0087931
rosa_laevigata	RLG00000015871 RLG00000015872 RLG00000015911 RLG00000015912
rosa_multiflora	Rmu_sc0006064.1_g000017 Rmu_sc0008385.1_g000023 Rmu_sc0013931.1_g000008 Rmu_sc0014136.1_g000012
rosa_roxburghii	Rroxscaffold_2G00153120 Rroxscaffold_2G00153130
rosa_rugosa	Rorug01G0475800.1 Rorug01G0479400 Rorug01G0479700
rosa_samantha	Rh2AG029200 Rh2AG029300 Rh2AG034100 Rh2AG034200 Rh2AG034500 Rh2BG029400 Rh2BG033300 Rh2BG033400 Rh2BG033500 Rh2CG029400 Rh2CG034000 Rh2CG034200 Rh2CG034500 Rh2DG029200 Rh2DG033700 Rh2DG033900 Rh2DG034200
rosa_wichuraiana	Rw2G002320 Rw2G002680 Rw2G002690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	228, 545
AcoI	YGGCCR	1 cut(s)	111
AcsI	RAATTY	1 cut(s)	462
AcuI	CTGAAG	1 cut(s)	506
AfaI	GTAC	3 cut(s)	400, 424, 483
AflIII	ACRYGT	1 cut(s)	300
AgsI	TTSAA	2 cut(s)	179, 541
AluBI	AGCT	4 cut(s)	26, 148, 169, 410
AluI	AGCT	4 cut(s)	26, 148, 169, 410
Alw26I	GTCTC	1 cut(s)	317
AlwNI	CAGNNNCTG	1 cut(s)	484
Ama87I	CYCGRG	1 cut(s)	161
AoxI	GGCC	2 cut(s)	111, 360
ApeKI	GCWGC	5 cut(s)	26, 33, 42, 148, 151
ApoI	RAATTY	1 cut(s)	462
AseI	ATTAAT	1 cut(s)	245
AspLEI	GCGC	1 cut(s)	156
AsuHPI	GGTGA	2 cut(s)	332, 506
AsuII	TTCGAA	2 cut(s)	370, 526
AsuNHI	GCTAGC	1 cut(s)	29
AvaI	CYCGRG	1 cut(s)	161
BalI	TGGCCA	1 cut(s)	113
BanII	GRGCYC	1 cut(s)	379
BbvI	GCAGC	5 cut(s)	13, 45, 54, 135, 163
BccI	CCATC	1 cut(s)	87
BcoDI	GTCTC	1 cut(s)	317
BfaI	CTAG	2 cut(s)	30, 287
BfmI	CTRYAG	1 cut(s)	149
BisI	GCNGC	6 cut(s)	27, 34, 43, 149, 152, 229
BlsI	GCNGC	6 cut(s)	28, 35, 44, 150, 153, 230
BmeT110I	CYCGRG	1 cut(s)	161
BmsI	GCATC	2 cut(s)	127, 204
BmtI	GCTAGC	1 cut(s)	33
Bpu14I	TTCGAA	2 cut(s)	370, 526
BpuEI	CTTGAG	2 cut(s)	224, 327
Bse3DI	GCAATG	1 cut(s)	147
BseGI	GGATG	4 cut(s)	70, 79, 142, 268
BseMI	GCAATG	1 cut(s)	147
BseMII	CTCAG	1 cut(s)	491
BseXI	GCAGC	5 cut(s)	13, 45, 54, 135, 163
BsgI	GTGCAG	1 cut(s)	377
BshFI	GGCC	2 cut(s)	113, 362
BsiHKCI	CYCGRG	1 cut(s)	161
BsmAI	GTCTC	1 cut(s)	317
BsmI	GAATGC	1 cut(s)	547
BsnI	GGCC	2 cut(s)	113, 362
BsoBI	CYCGRG	1 cut(s)	161
Bsp119I	TTCGAA	2 cut(s)	370, 526
Bsp1286I	GDGCHC	1 cut(s)	379
Bsp1407I	TGTACA	1 cut(s)	422
BspACI	CCGC	2 cut(s)	228, 545
BspANI	GGCC	2 cut(s)	113, 362
BspCNI	CTCAG	1 cut(s)	490
BspMAI	CTGCAG	1 cut(s)	153
BspOI	GCTAGC	1 cut(s)	33
BspT104I	TTCGAA	2 cut(s)	370, 526
BsrDI	GCAATG	1 cut(s)	147
BsrGI	TGTACA	1 cut(s)	422
Bst4CI	ACNGT	2 cut(s)	403, 448
BstAUI	TGTACA	1 cut(s)	422
BstBI	TTCGAA	2 cut(s)	370, 526
BstC8I	GCNNGC	3 cut(s)	31, 99, 360
BstDEI	CTNAG	1 cut(s)	477
BstF5I	GGATG	4 cut(s)	70, 79, 142, 268
BstHHI	GCGC	1 cut(s)	156
BstMAI	GTCTC	1 cut(s)	317
BstMWI	GCNNNNNNNGC	3 cut(s)	10, 39, 42
BstNSI	RCATGY	1 cut(s)	304
BstSFI	CTRYAG	1 cut(s)	149
BstV1I	GCAGC	5 cut(s)	13, 45, 54, 135, 163
BsuRI	GGCC	2 cut(s)	113, 362
BtsCI	GGATG	4 cut(s)	70, 79, 142, 268
Cac8I	GCNNGC	3 cut(s)	31, 99, 360
CaiI	CAGNNNCTG	1 cut(s)	484
CfoI	GCGC	1 cut(s)	156
Csp6I	GTAC	3 cut(s)	399, 423, 482
CviAII	CATG	2 cut(s)	17, 301
CviJI	RGCY	8 cut(s)	26, 45, 113, 148, 169, 362, 377, 410
CviKI_1	RGCY	8 cut(s)	26, 45, 113, 148, 169, 362, 377, 410
CviQI	GTAC	3 cut(s)	399, 423, 482
DdeI	CTNAG	1 cut(s)	477
EaeI	YGGCCR	1 cut(s)	111
Eco24I	GRGCYC	1 cut(s)	379
Eco57I	CTGAAG	1 cut(s)	506
Eco88I	CYCGRG	1 cut(s)	161
EcoT38I	GRGCYC	1 cut(s)	379
FaeI	CATG	2 cut(s)	20, 304
FatI	CATG	2 cut(s)	16, 300
FauNDI	CATATG	2 cut(s)	184, 277
Fnu4HI	GCNGC	6 cut(s)	27, 34, 43, 149, 152, 229
FokI	GGATG	4 cut(s)	66, 77, 149, 275
FriOI	GRGCYC	1 cut(s)	379
Fsp4HI	GCNGC	6 cut(s)	27, 34, 43, 149, 152, 229
FspBI	CTAG	2 cut(s)	30, 287
GlaI	GCGC	1 cut(s)	155
GluI	GCNGC	6 cut(s)	27, 34, 43, 149, 152, 229
HaeIII	GGCC	2 cut(s)	113, 362
HhaI	GCGC	1 cut(s)	156
Hin1II	CATG	2 cut(s)	20, 304
Hin6I	GCGC	1 cut(s)	154
HinP1I	GCGC	1 cut(s)	154
HindIII	AAGCTT	1 cut(s)	167
HinfI	GANTC	2 cut(s)	75, 86
HphI	GGTGA	2 cut(s)	332, 506
Hpy166II	GTNNAC	1 cut(s)	425
Hpy188I	TCNGA	1 cut(s)	469
Hpy188III	TCNNGA	3 cut(s)	83, 163, 260
Hpy8I	GTNNAC	1 cut(s)	425
HpyAV	CCTTC	3 cut(s)	366, 481, 533
HpyCH4III	ACNGT	2 cut(s)	403, 448
HpyCH4IV	ACGT	2 cut(s)	120, 174
HpyCH4V	TGCA	7 cut(s)	101, 140, 151, 217, 330, 358, 510
HpyF10VI	GCNNNNNNNGC	3 cut(s)	10, 39, 42
HpyF3I	CTNAG	1 cut(s)	477
HpySE526I	ACGT	2 cut(s)	120, 174
Hsp92II	CATG	2 cut(s)	20, 304
HspAI	GCGC	1 cut(s)	154
LmnI	GCTCC	2 cut(s)	145, 407
LpnPI	CCDG	8 cut(s)	52, 96, 236, 245, 303, 344, 396, 464
Lsp1109I	GCAGC	5 cut(s)	13, 45, 54, 135, 163
LweI	GCATC	2 cut(s)	127, 204
MaeI	CTAG	2 cut(s)	30, 287
MaeII	ACGT	2 cut(s)	120, 174
MaeIII	GTNAC	1 cut(s)	494
MboII	GAAGA	3 cut(s)	293, 305, 449
MhlI	GDGCHC	1 cut(s)	379
MlsI	TGGCCA	1 cut(s)	113
MluCI	AATT	4 cut(s)	47, 242, 393, 462
MluNI	TGGCCA	1 cut(s)	113
MmeI	TCCRAC	1 cut(s)	42
MnlI	CCTC	2 cut(s)	170, 450
Mox20I	TGGCCA	1 cut(s)	113
MscI	TGGCCA	1 cut(s)	113
MseI	TTAA	3 cut(s)	51, 245, 450
Msp20I	TGGCCA	1 cut(s)	113
Mva1269I	GAATGC	1 cut(s)	547
MwoI	GCNNNNNNNGC	3 cut(s)	10, 39, 42
NdeI	CATATG	2 cut(s)	184, 277
NheI	GCTAGC	1 cut(s)	29
NlaIII	CATG	2 cut(s)	20, 304
NmuCI	GTSAC	1 cut(s)	494
NspI	RCATGY	1 cut(s)	304
NspV	TTCGAA	2 cut(s)	370, 526
PaeR7I	CTCGAG	1 cut(s)	161
PciI	ACATGT	1 cut(s)	300
PcsI	WCGNNNNNNNCGW	1 cut(s)	532
PctI	GAATGC	1 cut(s)	547
PfeI	GAWTC	2 cut(s)	75, 86
PkrI	GCNGC	6 cut(s)	28, 35, 44, 150, 153, 230
PscI	ACATGT	1 cut(s)	300
PshBI	ATTAAT	1 cut(s)	245
PstI	CTGCAG	1 cut(s)	153
PstNI	CAGNNNCTG	1 cut(s)	484
RsaI	GTAC	3 cut(s)	400, 424, 483
RsaNI	GTAC	3 cut(s)	399, 423, 482
SaqAI	TTAA	3 cut(s)	51, 245, 450
SatI	GCNGC	6 cut(s)	27, 34, 43, 149, 152, 229
SduI	GDGCHC	1 cut(s)	379
SfaNI	GCATC	2 cut(s)	127, 204
SfcI	CTRYAG	1 cut(s)	149
Sfr274I	CTCGAG	1 cut(s)	161
SfuI	TTCGAA	2 cut(s)	370, 526
SlaI	CTCGAG	1 cut(s)	161
SmlI	CTYRAG	3 cut(s)	161, 203, 342
SmoI	CTYRAG	3 cut(s)	161, 203, 342
Sse9I	AATT	4 cut(s)	47, 242, 393, 462
SsiI	CCGC	2 cut(s)	228, 545
SspMI	CTAG	2 cut(s)	30, 287
TaaI	ACNGT	2 cut(s)	403, 448
TaiI	ACGT	2 cut(s)	123, 177
TaqI	TCGA	3 cut(s)	162, 370, 526
TasI	AATT	4 cut(s)	47, 242, 393, 462
TatI	WGTACW	2 cut(s)	398, 422
TauI	GCSGC	1 cut(s)	231
TfiI	GAWTC	2 cut(s)	75, 86
Tru1I	TTAA	3 cut(s)	51, 245, 450
Tru9I	TTAA	3 cut(s)	51, 245, 450
TseFI	GTSAC	1 cut(s)	494
TseI	GCWGC	5 cut(s)	26, 33, 42, 148, 151
Tsp45I	GTSAC	1 cut(s)	494
TspDTI	ATGAA	2 cut(s)	294, 306
VspI	ATTAAT	1 cut(s)	245
XapI	RAATTY	1 cut(s)	462
XceI	RCATGY	1 cut(s)	304
XhoI	CTCGAG	1 cut(s)	161
XspI	CTAG	2 cut(s)	30, 287

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.