Rh2BG029400

Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2B
OG0002341
Physical Location & Seq
Forward (+)
1928527 .. 1930209
1683 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2BG029400.1

Sequence Viewer

Length: 1248 bp
ATGGCTCCGGCATATCAACATAAGGAAAATGAGAATAAGTCAGATGATGAAGCTTCTGCTTCACCGAGGGTCATGGCTTGCTGTTGGGGTCAAGCTGAAGGTACTCTAGTGATGTTAGATTCATATGGGGAATTGCTAGATGTGCTATGTATAGGTTCCTTTTCCTGGGAGTCTTTCAACTACACTGAAAACTGCAATGATACTGTTACTTGGCTCCGTAATTATTATGAAAAAAAACGGGTCTTGAAGTTCGTGACTGATCGATCACCAACCAAGTGGGCAAGTGTTGTGGTTATCGGAGCTGTTAATATGTCTTGTACTCTCATAAGACAACTTATGTTCTGGGTAAGAGGAGAAGTGAGTGAAAAGACTAAAGCTTTTGTGCTTTCAGGATTGTTTAATTATGGGGATGAATCTTTGGGTCGCCTGTATGAAAATTCTCAGACCTCTTCCAATCAGCTACCAGCTGGGCAATCAGATAATGTCAAGCGGGCAGTGGCTCTTGGGCGTTATCTTCAAAATCCACTAGCAATGGTTGCCACACTCTGCGGACCTGGAAGAGATATCTTATCCTGGAAATTGCTCAGTTCCCCTTTTGAGGACATTCTCACTCCGGACGAGAAGTATAAGGTGATTGAACAGGTCATGGTAGATGTTACAAACCAAGTAGGCCTAGACATAAATTTGGCCATAAGCCATGAATGGAGCGGCAAGCAATTTCGTGATCTGTTGGATGATACAAGAATACATCCAGAATCCTATATTCTTGCTGAGGAATTGGTGAAAGACGTTTATGATGGTAACGATGCTCTAGAATGCATTTATTGGTACCGACCTGGTTACCTTGAAAGGCTTGACATTGAAGCATATGCTAGAAGCAAGCAACTTGAGGATAAGATGCAAACTTTGTATGATATAAGGAAAGAATTAATACAGGGTTTTCGGGACCCGAGGAAAGAGTATGAAGAACCAAGTGTTGATGAACTTTTTCATCTGCTCACTGGTTTAACTGATGATGCCATTTGTGAAGGAAGAATTGTGCAGGCAACGGTGTGCAGCGTGTGTCCTATTAGGGCATCTTGTAATACTGAACTTGGATTGAGGGGTGCGCCTCCGAAAGCAGACTTATCAGATCATGGAAGGCGTACTAAAGACTTGAGTAAAAAGCTGAAGAAGGGTGACATTATCACTTGCAAGATCAAAACTGTAAAAAAGAGGCACTTTGAGGCATGCCTTAGTAGTTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000785 GO:0000988 GO:0000990 GO:0000991 GO:0002637 GO:0002682 GO:0002694 GO:0002697 GO:0002700 GO:0002703 GO:0002706 GO:0002712 GO:0002819 GO:0002822 GO:0002889 GO:0003006 GO:0003674 GO:0003682 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006325 GO:0006338 GO:0006342 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009506 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0010793 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030054 GO:0031056 GO:0031057 GO:0031060 GO:0031061 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031491 GO:0031974 GO:0031981 GO:0032239 GO:0032268 GO:0032269 GO:0032386 GO:0032501 GO:0032502 GO:0032774 GO:0032784 GO:0032786 GO:0032879 GO:0032880 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0033157 GO:0034243 GO:0034641 GO:0034645 GO:0034654 GO:0034728 GO:0035327 GO:0040029 GO:0042393 GO:0042789 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0043954 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045191 GO:0045595 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0046822 GO:0046825 GO:0046831 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050684 GO:0050776 GO:0050789 GO:0050793 GO:0050794 GO:0050864 GO:0050865 GO:0051049 GO:0051052 GO:0051128 GO:0051129 GO:0051147 GO:0051171 GO:0051172 GO:0051173 GO:0051223 GO:0051239 GO:0051246 GO:0051248 GO:0051249 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0055044 GO:0060255 GO:0060341 GO:0061085 GO:0061086 GO:0061458 GO:0065007 GO:0070013 GO:0070201 GO:0070827 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090087 GO:0090304 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902275 GO:1902679 GO:1902680 GO:1903311 GO:1903506 GO:1903507 GO:1903508 GO:1903827 GO:1905268 GO:2000026 GO:2000112 GO:2000113 GO:2000197 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DLD HHH_7 HTH_44 SH2_2 SPT6_acidic YqgF

Protein Analysis

415

Amino Acids

47.08

Weight (kDa)

5.41

Isoelectric Point (pI)

40.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HHH_9 PF17674 243 - 318 1e-08 HHH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 828
AccB1I GGYRCC 1 cut(s) 828
AccBSI CCGCTC 1 cut(s) 708
AccIII TCCGGA 1 cut(s) 613
AciI CCGC 3 cut(s) 490, 549, 708
AcoI YGGCCR 1 cut(s) 687
AcsI RAATTY 2 cut(s) 436, 682
AcuI CTGAAG 2 cut(s) 117, 1190
AfaI GTAC 4 cut(s) 103, 319, 830, 1147
AfiI CCNNNNNNNGG 2 cut(s) 165, 598
AgsI TTSAA 6 cut(s) 178, 247, 518, 638, 848, 863
AjnI CCWGG 4 cut(s) 164, 553, 572, 835
AluBI AGCT 7 cut(s) 53, 95, 302, 377, 460, 467, 1168
AluI AGCT 7 cut(s) 53, 95, 302, 377, 460, 467, 1168
Ama87I CYCGRG 1 cut(s) 949
Aor13HI TCCGGA 1 cut(s) 613
AoxI GGCC 2 cut(s) 670, 687
ApeKI GCWGC 1 cut(s) 1056
ApoI RAATTY 2 cut(s) 436, 682
AseI ATTAAT 1 cut(s) 929
Asp700I GAANNNNTTC 1 cut(s) 987
Asp718I GGTACC 1 cut(s) 828
AspLEI GCGC 1 cut(s) 1111
AspS9I GGNCC 2 cut(s) 551, 946
AsuHPI GGTGA 5 cut(s) 54, 258, 643, 793, 1190
AvaI CYCGRG 1 cut(s) 949
AvaII GGWCC 2 cut(s) 551, 946
BaeI ACNNNNGTAYC 2 cut(s) 93, 126
BalI TGGCCA 1 cut(s) 689
BanI GGYRCC 1 cut(s) 828
BbvCI CCTCAGC 1 cut(s) 771
BbvI GCAGC 1 cut(s) 1068
BccI CCATC 1 cut(s) 791
BciT130I CCWGG 4 cut(s) 166, 555, 574, 837
BfaI CTAG 6 cut(s) 107, 137, 527, 674, 812, 873
BisI GCNGC 2 cut(s) 709, 1057
BlsI GCNGC 2 cut(s) 710, 1058
Bme1390I CCNGG 4 cut(s) 166, 555, 574, 837
Bme18I GGWCC 2 cut(s) 551, 946
BmeT110I CYCGRG 1 cut(s) 949
BmgT120I GGNCC 2 cut(s) 551, 946
BmiI GGNNCC 6 cut(s) 6, 157, 215, 830, 947, 948
BmrFI CCNGG 4 cut(s) 166, 555, 574, 837
BmsI GCATC 4 cut(s) 796, 888, 1006, 1085
Bpu10I CCTNAGC 1 cut(s) 771
BpuEI CTTGAG 2 cut(s) 908, 1177
Bsa29I ATCGAT 1 cut(s) 262
BsaJI CCNNGG 3 cut(s) 65, 165, 950
BsaWI WCCGGW 1 cut(s) 613
Bsc4I CCNNNNNNNGG 2 cut(s) 165, 598
Bse1I ACTGG 1 cut(s) 1006
Bse3DI GCAATG 2 cut(s) 202, 537
BseAI TCCGGA 1 cut(s) 613
BseBI CCWGG 4 cut(s) 166, 555, 574, 837
BseCI ATCGAT 1 cut(s) 262
BseDI CCNNGG 3 cut(s) 65, 165, 950
BseGI GGATG 3 cut(s) 415, 739, 748
BseLI CCNNNNNNNGG 2 cut(s) 165, 598
BseMI GCAATG 2 cut(s) 202, 537
BseMII CTCAG 3 cut(s) 455, 598, 762
BseNI ACTGG 1 cut(s) 1006
BseRI GAGGAG 1 cut(s) 366
BseXI GCAGC 1 cut(s) 1068
BseYI CCCAGC 1 cut(s) 467
BsgI GTGCAG 2 cut(s) 1061, 1075
BshFI GGCC 2 cut(s) 672, 689
BshNI GGYRCC 1 cut(s) 828
BshVI ATCGAT 1 cut(s) 262
BsiHKCI CYCGRG 1 cut(s) 949
BsiSI CCGG 2 cut(s) 8, 614
BslFI GGGAC 1 cut(s) 959
BslI CCNNNNNNNGG 2 cut(s) 165, 598
BsmFI GGGAC 1 cut(s) 959
BsmI GAATGC 1 cut(s) 821
BsnI GGCC 2 cut(s) 672, 689
BsoBI CYCGRG 1 cut(s) 949
Bsp13I TCCGGA 1 cut(s) 613
Bsp143I GATC 5 cut(s) 259, 263, 724, 1132, 1197
BspACI CCGC 3 cut(s) 490, 549, 708
BspANI GGCC 2 cut(s) 672, 689
BspCNI CTCAG 3 cut(s) 454, 597, 763
BspDI ATCGAT 1 cut(s) 262
BspEI TCCGGA 1 cut(s) 613
BspLI GGNNCC 6 cut(s) 6, 157, 215, 830, 947, 948
BspT107I GGYRCC 1 cut(s) 828
BsrBI CCGCTC 1 cut(s) 708
BsrDI GCAATG 2 cut(s) 202, 537
BsrI ACTGG 1 cut(s) 1006
BssECI CCNNGG 3 cut(s) 65, 165, 950
BssMI GATC 5 cut(s) 259, 263, 724, 1132, 1197
Bst2UI CCWGG 4 cut(s) 166, 555, 574, 837
Bst4CI ACNGT 3 cut(s) 205, 1051, 1207
Bst6I CTCTTC 2 cut(s) 454, 553
BstAPI GCANNNNNTGC 1 cut(s) 536
BstC8I GCNNGC 6 cut(s) 79, 492, 713, 881, 1044, 1231
BstDEI CTNAG 4 cut(s) 441, 584, 771, 1235
BstEII GGTNACC 1 cut(s) 839
BstF5I GGATG 3 cut(s) 415, 739, 748
BstHHI GCGC 1 cut(s) 1111
BstKTI GATC 5 cut(s) 262, 266, 727, 1135, 1200
BstMBI GATC 5 cut(s) 259, 263, 724, 1132, 1197
BstMWI GCNNNNNNNGC 2 cut(s) 142, 536
BstNI CCWGG 4 cut(s) 166, 555, 574, 837
BstNSI RCATGY 1 cut(s) 1233
BstPI GGTNACC 1 cut(s) 839
BstSCI CCNGG 4 cut(s) 164, 553, 572, 835
BstV1I GCAGC 1 cut(s) 1068
BstXI CCANNNNNNTGG 1 cut(s) 276
Bsu15I ATCGAT 1 cut(s) 262
BsuRI GGCC 2 cut(s) 672, 689
BsuTUI ATCGAT 1 cut(s) 262
BtsCI GGATG 3 cut(s) 415, 739, 748
BtsI GCAGTG 1 cut(s) 501
BtsIMutI CAGTG 3 cut(s) 183, 501, 999
Cac8I GCNNGC 6 cut(s) 79, 492, 713, 881, 1044, 1231
CfoI GCGC 1 cut(s) 1111
Cfr13I GGNCC 2 cut(s) 551, 946
ClaI ATCGAT 1 cut(s) 262
CsiI ACCWGGT 1 cut(s) 835
Csp6I GTAC 4 cut(s) 102, 318, 829, 1146
CspCI CAANNNNNGTGG 2 cut(s) 270, 305
CviAII CATG 5 cut(s) 73, 646, 698, 1136, 1230
CviQI GTAC 4 cut(s) 102, 318, 829, 1146
DdeI CTNAG 4 cut(s) 441, 584, 771, 1235
DpnI GATC 5 cut(s) 261, 265, 726, 1134, 1199
DpnII GATC 5 cut(s) 259, 263, 724, 1132, 1197
EaeI YGGCCR 1 cut(s) 687
Eam1104I CTCTTC 2 cut(s) 454, 553
EarI CTCTTC 2 cut(s) 454, 553
Eco147I AGGCCT 1 cut(s) 672
Eco32I GATATC 1 cut(s) 565
Eco47I GGWCC 2 cut(s) 551, 946
Eco57I CTGAAG 2 cut(s) 117, 1190
Eco88I CYCGRG 1 cut(s) 949
Eco91I GGTNACC 1 cut(s) 839
EcoO109I RGGNCCY 1 cut(s) 946
EcoO65I GGTNACC 1 cut(s) 839
EcoRII CCWGG 4 cut(s) 164, 553, 572, 835
EcoRV GATATC 1 cut(s) 565
EcoT22I ATGCAT 1 cut(s) 821
FaeI CATG 5 cut(s) 76, 649, 701, 1139, 1233
FalI AAGNNNNNCTT 2 cut(s) 1205, 1237
FaqI GGGAC 1 cut(s) 959
FatI CATG 5 cut(s) 72, 645, 697, 1135, 1229
FauI CCCGC 1 cut(s) 483
FauNDI CATATG 2 cut(s) 124, 868
Fnu4HI GCNGC 2 cut(s) 709, 1057
FokI GGATG 3 cut(s) 422, 735, 746
Fsp4HI GCNGC 2 cut(s) 709, 1057
FspBI CTAG 6 cut(s) 107, 137, 527, 674, 812, 873
GlaI GCGC 1 cut(s) 1110
GluI GCNGC 2 cut(s) 709, 1057
GsaI CCCAGC 1 cut(s) 471
HaeIII GGCC 2 cut(s) 672, 689
HapII CCGG 2 cut(s) 8, 614
HhaI GCGC 1 cut(s) 1111
Hin1II CATG 5 cut(s) 76, 649, 701, 1139, 1233
Hin6I GCGC 1 cut(s) 1109
HinP1I GCGC 1 cut(s) 1109
HindIII AAGCTT 2 cut(s) 51, 375
HinfI GANTC 4 cut(s) 119, 170, 413, 755
HpaII CCGG 2 cut(s) 8, 614
HphI GGTGA 5 cut(s) 54, 258, 643, 793, 1190
Hpy188I TCNGA 6 cut(s) 43, 299, 444, 478, 1116, 1132
Hpy188III TCNNGA 8 cut(s) 244, 253, 390, 614, 722, 752, 812, 944
HpyAV CCTTC 4 cut(s) 92, 1022, 1134, 1168
HpyCH4III ACNGT 3 cut(s) 205, 1051, 1207
HpyCH4IV ACGT 1 cut(s) 789
HpyCH4V TGCA 6 cut(s) 195, 819, 901, 1042, 1056, 1194
HpyF10VI GCNNNNNNNGC 2 cut(s) 142, 536
HpyF3I CTNAG 4 cut(s) 441, 584, 771, 1235
HpySE526I ACGT 1 cut(s) 789
Hsp92II CATG 5 cut(s) 76, 649, 701, 1139, 1233
HspAI GCGC 1 cut(s) 1109
KflI GGGWCCC 1 cut(s) 946
Kpn2I TCCGGA 1 cut(s) 613
KpnI GGTACC 1 cut(s) 832
Kzo9I GATC 5 cut(s) 259, 263, 724, 1132, 1197
LmnI GCTCC 4 cut(s) 10, 219, 299, 705
Lsp1109I GCAGC 1 cut(s) 1068
LweI GCATC 4 cut(s) 796, 888, 1006, 1085
MabI ACCWGGT 1 cut(s) 835
MaeI CTAG 6 cut(s) 107, 137, 527, 674, 812, 873
MaeII ACGT 1 cut(s) 789
MaeIII GTNAC 6 cut(s) 205, 253, 655, 800, 839, 1178
MalI GATC 5 cut(s) 261, 265, 726, 1134, 1199
MbiI CCGCTC 1 cut(s) 708
MboI GATC 5 cut(s) 259, 263, 724, 1132, 1197
MboII GAAGA 6 cut(s) 441, 506, 570, 977, 1044, 1183
MlsI TGGCCA 1 cut(s) 689
MluNI TGGCCA 1 cut(s) 689
MlyI GAGTC 1 cut(s) 179
MmeI TCCRAC 1 cut(s) 711
Mox20I TGGCCA 1 cut(s) 689
Mph1103I ATGCAT 1 cut(s) 821
MroI TCCGGA 1 cut(s) 613
MroXI GAANNNNTTC 1 cut(s) 987
MscI TGGCCA 1 cut(s) 689
MseI TTAA 4 cut(s) 306, 399, 929, 1007
Msp20I TGGCCA 1 cut(s) 689
MspA1I CMGCKG 1 cut(s) 467
MspI CCGG 2 cut(s) 8, 614
MspR9I CCNGG 4 cut(s) 166, 555, 574, 837
Mva1269I GAATGC 1 cut(s) 821
MvaI CCWGG 4 cut(s) 166, 555, 574, 837
MwoI GCNNNNNNNGC 2 cut(s) 142, 536
NdeI CATATG 2 cut(s) 124, 868
NdeII GATC 5 cut(s) 259, 263, 724, 1132, 1197
NlaIII CATG 5 cut(s) 76, 649, 701, 1139, 1233
NlaIV GGNNCC 6 cut(s) 6, 157, 215, 830, 947, 948
NmuCI GTSAC 2 cut(s) 253, 1178
NsiI ATGCAT 1 cut(s) 821
NspI RCATGY 1 cut(s) 1233
PaeI GCATGC 1 cut(s) 1233
PceI AGGCCT 1 cut(s) 672
PctI GAATGC 1 cut(s) 821
PdmI GAANNNNTTC 1 cut(s) 987
PfeI GAWTC 3 cut(s) 119, 413, 755
PfoI TCCNGGA 1 cut(s) 572
PkrI GCNGC 2 cut(s) 710, 1058
PleI GAGTC 1 cut(s) 178
PpsI GAGTC 1 cut(s) 178
PpuMI RGGWCCY 1 cut(s) 946
PshBI ATTAAT 1 cut(s) 929
Psp5II RGGWCCY 1 cut(s) 946
Psp6I CCWGG 4 cut(s) 164, 553, 572, 835
PspEI GGTNACC 1 cut(s) 839
PspFI CCCAGC 1 cut(s) 467
PspGI CCWGG 4 cut(s) 164, 553, 572, 835
PspN4I GGNNCC 6 cut(s) 6, 157, 215, 830, 947, 948
PspPI GGNCC 2 cut(s) 551, 946
PspPPI RGGWCCY 1 cut(s) 946
PvuII CAGCTG 1 cut(s) 467
RsaI GTAC 4 cut(s) 103, 319, 830, 1147
RsaNI GTAC 4 cut(s) 102, 318, 829, 1146
SaqAI TTAA 4 cut(s) 306, 399, 929, 1007
SatI GCNGC 2 cut(s) 709, 1057
Sau3AI GATC 5 cut(s) 259, 263, 724, 1132, 1197
Sau96I GGNCC 2 cut(s) 551, 946
SchI GAGTC 1 cut(s) 179
ScrFI CCNGG 4 cut(s) 166, 555, 574, 837
SexAI ACCWGGT 1 cut(s) 835
SfaNI GCATC 4 cut(s) 796, 888, 1006, 1085
SinI GGWCC 2 cut(s) 551, 946
SmlI CTYRAG 2 cut(s) 887, 1156
SmoI CTYRAG 2 cut(s) 887, 1156
SphI GCATGC 1 cut(s) 1233
SseBI AGGCCT 1 cut(s) 672
SsiI CCGC 3 cut(s) 490, 549, 708
SspMI CTAG 6 cut(s) 107, 137, 527, 674, 812, 873
StuI AGGCCT 1 cut(s) 672
StyD4I CCNGG 4 cut(s) 164, 553, 572, 835
TaaI ACNGT 3 cut(s) 205, 1051, 1207
TaiI ACGT 1 cut(s) 792
TaqI TCGA 1 cut(s) 262
TatI WGTACW 1 cut(s) 317
TauI GCSGC 1 cut(s) 711
TfiI GAWTC 3 cut(s) 119, 413, 755
Tru1I TTAA 4 cut(s) 306, 399, 929, 1007
Tru9I TTAA 4 cut(s) 306, 399, 929, 1007
TscAI CASTG 3 cut(s) 190, 501, 1006
TseFI GTSAC 2 cut(s) 253, 1178
TseI GCWGC 1 cut(s) 1056
Tsp45I GTSAC 2 cut(s) 253, 1178
TspDTI ATGAA 9 cut(s) 63, 111, 243, 426, 447, 714, 978, 980, 996
TspGWI ACGGA 1 cut(s) 206
TspRI CASTG 3 cut(s) 190, 501, 1006
VpaK11BI GGWCC 2 cut(s) 551, 946
VspI ATTAAT 1 cut(s) 929
XapI RAATTY 2 cut(s) 436, 682
XbaI TCTAGA 1 cut(s) 811
XceI RCATGY 1 cut(s) 1233
XmnI GAANNNNTTC 1 cut(s) 987
XspI CTAG 6 cut(s) 107, 137, 527, 674, 812, 873
Zsp2I ATGCAT 1 cut(s) 821
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.