Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006064.1

Orthogroup ID

OG0002341

Physical Location & Seq

Genomic Coordinates Forward (+)

74725 .. 76262

Gene Structure 1538 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006064.1_g000017.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 795 bp

atgggcttttatgggcctttaatccaattgccgaaaatccacttcattcttgagagttcttgggcctccatgcgccacctttatgccatgtcatcatctagagtcttcattcatggttggctcaagagtcttgttttggcaagctttccttttctggacagggtttcctgttccccttttgaggacattctcactccggacgagaagtataaggtgattgaacaggtcatggtagatgttacaaaccacgtaggcctagacataaatttggccacaagccatgaatggttatttgcacctttgcaattcatttccggacttggacctagaaaggcagcacatttgcagcagtggttggtcagatctggatgcacaatctctaatcggagggagtttgttacattgcaccagcttggtcaaaaggtgtatgataatgcagtcagtttcttgcgtgttcagctgagcagcaggagcggcaagcaatttcgtgatctgttggatgatacaagaatacatccagaatcctatattcttgctgaggaattggtgaaagtcgtttatgatggtaacgatgctctagagtgcatttggtaccgacctggttaccttgaaaggcttgacattgaagcatatgctagaagcaagcaacttgaggataagatgcaaactttgtatgatataaggaaagaattaatacagggttttcgggacccgaggaaagagtatgaagaaccaagtgttaatgtactttttcatctgctcactggtttaactgatgatgccggccatttgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000018 GO:0000785 GO:0000988 GO:0000990 GO:0000991 GO:0002637 GO:0002682 GO:0002694 GO:0002697 GO:0002700 GO:0002703 GO:0002706 GO:0002712 GO:0002819 GO:0002822 GO:0002889 GO:0003006 GO:0003674 GO:0003682 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006325 GO:0006338 GO:0006342 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009506 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0010793 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030054 GO:0031056 GO:0031057 GO:0031060 GO:0031061 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031491 GO:0031974 GO:0031981 GO:0032239 GO:0032268 GO:0032269 GO:0032386 GO:0032501 GO:0032502 GO:0032774 GO:0032784 GO:0032786 GO:0032879 GO:0032880 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0033157 GO:0034243 GO:0034641 GO:0034645 GO:0034654 GO:0034728 GO:0035327 GO:0040029 GO:0042393 GO:0042789 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0043954 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045191 GO:0045595 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0046822 GO:0046825 GO:0046831 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050684 GO:0050776 GO:0050789 GO:0050793 GO:0050794 GO:0050864 GO:0050865 GO:0051049 GO:0051052 GO:0051128 GO:0051129 GO:0051147 GO:0051171 GO:0051172 GO:0051173 GO:0051223 GO:0051239 GO:0051246 GO:0051248 GO:0051249 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0055044 GO:0060255 GO:0060341 GO:0061085 GO:0061086 GO:0061458 GO:0065007 GO:0070013 GO:0070201 GO:0070827 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090087 GO:0090304 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902275 GO:1902679 GO:1902680 GO:1903311 GO:1903506 GO:1903507 GO:1903508 GO:1903827 GO:1905268 GO:2000026 GO:2000112 GO:2000113 GO:2000197 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DLD HHH_7 HTH_44 SH2_2 SPT6_acidic YqgF

Protein Analysis

264

Amino Acids

30.53

Weight (kDa)

6.06

Isoelectric Point (pI)

51.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002341)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63210
fragaria_vesca	FvH4_1g02481 FvH4_1g02810
rosa_chinensis	RchiOBHm_Chr2g0087471 RchiOBHm_Chr2g0087481 RchiOBHm_Chr2g0087901 RchiOBHm_Chr2g0087911 RchiOBHm_Chr2g0087921 RchiOBHm_Chr2g0087931
rosa_laevigata	RLG00000015871 RLG00000015872 RLG00000015911 RLG00000015912
rosa_multiflora	Rmu_sc0006064.1_g000017 Rmu_sc0008385.1_g000023 Rmu_sc0013931.1_g000008 Rmu_sc0014136.1_g000012
rosa_roxburghii	Rroxscaffold_2G00153120 Rroxscaffold_2G00153130
rosa_rugosa	Rorug01G0475800.1 Rorug01G0479400 Rorug01G0479700
rosa_samantha	Rh2AG029200 Rh2AG029300 Rh2AG034100 Rh2AG034200 Rh2AG034500 Rh2BG029400 Rh2BG033300 Rh2BG033400 Rh2BG033500 Rh2CG029400 Rh2CG034000 Rh2CG034200 Rh2CG034500 Rh2DG029200 Rh2DG033700 Rh2DG033900 Rh2DG034200
rosa_wichuraiana	Rw2G002320 Rw2G002680 Rw2G002690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	591
AccB1I	GGYRCC	1 cut(s)	591
AccBSI	CCGCTC	1 cut(s)	474
AccIII	TCCGGA	2 cut(s)	196, 314
AciI	CCGC	1 cut(s)	474
AcoI	YGGCCR	2 cut(s)	270, 784
AcsI	RAATTY	1 cut(s)	265
AfaI	GTAC	2 cut(s)	593, 747
AfiI	CCNNNNNNNGG	1 cut(s)	181
AgsI	TTSAA	3 cut(s)	221, 611, 626
AjnI	CCWGG	1 cut(s)	598
AluBI	AGCT	3 cut(s)	144, 412, 460
AluI	AGCT	3 cut(s)	144, 412, 460
Ama87I	CYCGRG	1 cut(s)	712
Aor13HI	TCCGGA	2 cut(s)	196, 314
AoxI	GGCC	5 cut(s)	14, 63, 253, 270, 784
ApeKI	GCWGC	3 cut(s)	335, 346, 465
ApoI	RAATTY	1 cut(s)	265
AseI	ATTAAT	1 cut(s)	692
Asp718I	GGTACC	1 cut(s)	591
AspLEI	GCGC	1 cut(s)	75
AspS9I	GGNCC	4 cut(s)	14, 63, 323, 709
AsuHPI	GGTGA	2 cut(s)	226, 559
AvaI	CYCGRG	1 cut(s)	712
AvaII	GGWCC	2 cut(s)	323, 709
BalI	TGGCCA	1 cut(s)	272
BanI	GGYRCC	1 cut(s)	591
BbsI	GAAGAC	1 cut(s)	97
BbvCI	CCTCAGC	1 cut(s)	537
BbvI	GCAGC	3 cut(s)	347, 358, 477
BccI	CCATC	1 cut(s)	557
BciT130I	CCWGG	1 cut(s)	600
BfaI	CTAG	5 cut(s)	99, 257, 327, 578, 636
BglII	AGATCT	1 cut(s)	362
BisI	GCNGC	4 cut(s)	336, 347, 466, 475
BlpI	GCTNAGC	1 cut(s)	461
BlsI	GCNGC	4 cut(s)	337, 348, 467, 476
Bme1390I	CCNGG	1 cut(s)	600
Bme18I	GGWCC	2 cut(s)	323, 709
BmeT110I	CYCGRG	1 cut(s)	712
BmgT120I	GGNCC	4 cut(s)	14, 63, 323, 709
BmiI	GGNNCC	3 cut(s)	593, 710, 711
BmrFI	CCNGG	1 cut(s)	600
BmsI	GCATC	4 cut(s)	359, 562, 651, 769
BpiI	GAAGAC	1 cut(s)	97
Bpu10I	CCTNAGC	1 cut(s)	537
Bpu1102I	GCTNAGC	1 cut(s)	461
BpuEI	CTTGAG	3 cut(s)	71, 107, 671
BsaAI	YACGTR	1 cut(s)	250
BsaJI	CCNNGG	1 cut(s)	713
BsaWI	WCCGGW	2 cut(s)	196, 314
Bsc4I	CCNNNNNNNGG	1 cut(s)	181
Bse118I	RCCGGY	1 cut(s)	782
Bse1I	ACTGG	1 cut(s)	769
Bse3DI	GCAATG	1 cut(s)	401
BseAI	TCCGGA	2 cut(s)	196, 314
BseBI	CCWGG	1 cut(s)	600
BseDI	CCNNGG	1 cut(s)	713
BseGI	GGATG	3 cut(s)	374, 505, 514
BseLI	CCNNNNNNNGG	1 cut(s)	181
BseMI	GCAATG	1 cut(s)	401
BseMII	CTCAG	2 cut(s)	452, 528
BseNI	ACTGG	1 cut(s)	769
BseXI	GCAGC	3 cut(s)	347, 358, 477
BshFI	GGCC	5 cut(s)	16, 65, 255, 272, 786
BshNI	GGYRCC	1 cut(s)	591
BsiHKCI	CYCGRG	1 cut(s)	712
BsiSI	CCGG	3 cut(s)	197, 315, 783
BslFI	GGGAC	1 cut(s)	722
BslI	CCNNNNNNNGG	1 cut(s)	181
BsmFI	GGGAC	1 cut(s)	722
BsnI	GGCC	5 cut(s)	16, 65, 255, 272, 786
BsoBI	CYCGRG	1 cut(s)	712
Bsp13I	TCCGGA	2 cut(s)	196, 314
Bsp143I	GATC	2 cut(s)	362, 490
Bsp1720I	GCTNAGC	1 cut(s)	461
BspACI	CCGC	1 cut(s)	474
BspANI	GGCC	5 cut(s)	16, 65, 255, 272, 786
BspCNI	CTCAG	2 cut(s)	453, 529
BspEI	TCCGGA	2 cut(s)	196, 314
BspLI	GGNNCC	3 cut(s)	593, 710, 711
BspT107I	GGYRCC	1 cut(s)	591
BsrBI	CCGCTC	1 cut(s)	474
BsrDI	GCAATG	1 cut(s)	401
BsrFI	RCCGGY	1 cut(s)	782
BsrI	ACTGG	1 cut(s)	769
BssAI	RCCGGY	1 cut(s)	782
BssECI	CCNNGG	1 cut(s)	713
BssMI	GATC	2 cut(s)	362, 490
Bst2UI	CCWGG	1 cut(s)	600
BstBAI	YACGTR	1 cut(s)	250
BstC8I	GCNNGC	4 cut(s)	142, 479, 644, 784
BstDEI	CTNAG	2 cut(s)	461, 537
BstEII	GGTNACC	1 cut(s)	602
BstF5I	GGATG	3 cut(s)	374, 505, 514
BstHHI	GCGC	1 cut(s)	75
BstKTI	GATC	2 cut(s)	365, 493
BstMBI	GATC	2 cut(s)	362, 490
BstMWI	GCNNNNNNNGC	3 cut(s)	457, 471, 474
BstNI	CCWGG	1 cut(s)	600
BstPI	GGTNACC	1 cut(s)	602
BstSCI	CCNGG	1 cut(s)	598
BstV1I	GCAGC	3 cut(s)	347, 358, 477
BstV2I	GAAGAC	1 cut(s)	97
BstX2I	RGATCY	1 cut(s)	362
BstYI	RGATCY	1 cut(s)	362
BsuRI	GGCC	5 cut(s)	16, 65, 255, 272, 786
BtsCI	GGATG	3 cut(s)	374, 505, 514
BtsI	GCAGTG	1 cut(s)	356
BtsIMutI	CAGTG	2 cut(s)	356, 762
Cac8I	GCNNGC	4 cut(s)	142, 479, 644, 784
CfoI	GCGC	1 cut(s)	75
Cfr10I	RCCGGY	1 cut(s)	782
Cfr13I	GGNCC	4 cut(s)	14, 63, 323, 709
CsiI	ACCWGGT	1 cut(s)	598
Csp6I	GTAC	2 cut(s)	592, 746
CviAII	CATG	5 cut(s)	70, 88, 113, 229, 281
CviQI	GTAC	2 cut(s)	592, 746
DdeI	CTNAG	2 cut(s)	461, 537
DpnI	GATC	2 cut(s)	364, 492
DpnII	GATC	2 cut(s)	362, 490
EaeI	YGGCCR	2 cut(s)	270, 784
Eco147I	AGGCCT	1 cut(s)	255
Eco47I	GGWCC	2 cut(s)	323, 709
Eco88I	CYCGRG	1 cut(s)	712
Eco91I	GGTNACC	1 cut(s)	602
EcoO109I	RGGNCCY	1 cut(s)	709
EcoO65I	GGTNACC	1 cut(s)	602
EcoRII	CCWGG	1 cut(s)	598
FaeI	CATG	5 cut(s)	73, 91, 116, 232, 284
FalI	AAGNNNNNCTT	2 cut(s)	133, 165
FaqI	GGGAC	1 cut(s)	722
FatI	CATG	5 cut(s)	69, 87, 112, 228, 280
FauNDI	CATATG	1 cut(s)	631
Fnu4HI	GCNGC	4 cut(s)	336, 347, 466, 475
FokI	GGATG	3 cut(s)	381, 501, 512
Fsp4HI	GCNGC	4 cut(s)	336, 347, 466, 475
FspBI	CTAG	5 cut(s)	99, 257, 327, 578, 636
GlaI	GCGC	1 cut(s)	74
GluI	GCNGC	4 cut(s)	336, 347, 466, 475
HaeIII	GGCC	5 cut(s)	16, 65, 255, 272, 786
HapII	CCGG	3 cut(s)	197, 315, 783
HhaI	GCGC	1 cut(s)	75
Hin1II	CATG	5 cut(s)	73, 91, 116, 232, 284
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HindIII	AAGCTT	1 cut(s)	142
HinfI	GANTC	3 cut(s)	102, 127, 521
HpaII	CCGG	3 cut(s)	197, 315, 783
HphI	GGTGA	2 cut(s)	226, 559
Hpy188I	TCNGA	2 cut(s)	362, 387
HpyCH4IV	ACGT	1 cut(s)	249
HpyCH4V	TGCA	8 cut(s)	296, 304, 346, 372, 406, 437, 585, 664
HpyF10VI	GCNNNNNNNGC	3 cut(s)	457, 471, 474
HpyF3I	CTNAG	2 cut(s)	461, 537
HpySE526I	ACGT	1 cut(s)	249
Hsp92II	CATG	5 cut(s)	73, 91, 116, 232, 284
HspAI	GCGC	1 cut(s)	73
KflI	GGGWCCC	1 cut(s)	709
Kpn2I	TCCGGA	2 cut(s)	196, 314
KpnI	GGTACC	1 cut(s)	595
KroI	GCCGGC	1 cut(s)	782
KroNI	GCCGGC	1 cut(s)	784
Kzo9I	GATC	2 cut(s)	362, 490
LmnI	GCTCC	1 cut(s)	471
Lsp1109I	GCAGC	3 cut(s)	347, 358, 477
LweI	GCATC	4 cut(s)	359, 562, 651, 769
MabI	ACCWGGT	1 cut(s)	598
MaeI	CTAG	5 cut(s)	99, 257, 327, 578, 636
MaeII	ACGT	1 cut(s)	249
MaeIII	GTNAC	4 cut(s)	238, 397, 566, 602
MalI	GATC	2 cut(s)	364, 492
MbiI	CCGCTC	1 cut(s)	474
MboI	GATC	2 cut(s)	362, 490
MboII	GAAGA	2 cut(s)	97, 740
MfeI	CAATTG	1 cut(s)	26
MflI	RGATCY	1 cut(s)	362
MlsI	TGGCCA	1 cut(s)	272
MluCI	AATT	6 cut(s)	26, 265, 305, 482, 542, 689
MluNI	TGGCCA	1 cut(s)	272
MlyI	GAGTC	2 cut(s)	111, 136
MmeI	TCCRAC	1 cut(s)	477
MnlI	CCTC	6 cut(s)	76, 175, 381, 532, 646, 708
Mox20I	TGGCCA	1 cut(s)	272
MroI	TCCGGA	2 cut(s)	196, 314
MroNI	GCCGGC	1 cut(s)	782
MscI	TGGCCA	1 cut(s)	272
MseI	TTAA	4 cut(s)	20, 692, 741, 770
MslI	CAYNNNNRTG	1 cut(s)	81
Msp20I	TGGCCA	1 cut(s)	272
MspA1I	CMGCKG	1 cut(s)	460
MspI	CCGG	3 cut(s)	197, 315, 783
MspR9I	CCNGG	1 cut(s)	600
MunI	CAATTG	1 cut(s)	26
MvaI	CCWGG	1 cut(s)	600
MwoI	GCNNNNNNNGC	3 cut(s)	457, 471, 474
NaeI	GCCGGC	1 cut(s)	784
NdeI	CATATG	1 cut(s)	631
NdeII	GATC	2 cut(s)	362, 490
NgoMIV	GCCGGC	1 cut(s)	782
NlaIII	CATG	5 cut(s)	73, 91, 116, 232, 284
NlaIV	GGNNCC	3 cut(s)	593, 710, 711
PceI	AGGCCT	1 cut(s)	255
PdiI	GCCGGC	1 cut(s)	784
PfeI	GAWTC	1 cut(s)	521
PkrI	GCNGC	4 cut(s)	337, 348, 467, 476
PleI	GAGTC	2 cut(s)	110, 135
PpsI	GAGTC	2 cut(s)	110, 135
Ppu21I	YACGTR	1 cut(s)	250
PpuMI	RGGWCCY	1 cut(s)	709
PshBI	ATTAAT	1 cut(s)	692
Psp5II	RGGWCCY	1 cut(s)	709
Psp6I	CCWGG	1 cut(s)	598
PspEI	GGTNACC	1 cut(s)	602
PspGI	CCWGG	1 cut(s)	598
PspN4I	GGNNCC	3 cut(s)	593, 710, 711
PspPI	GGNCC	4 cut(s)	14, 63, 323, 709
PspPPI	RGGWCCY	1 cut(s)	709
PsuI	RGATCY	1 cut(s)	362
PvuII	CAGCTG	1 cut(s)	460
RsaI	GTAC	2 cut(s)	593, 747
RsaNI	GTAC	2 cut(s)	592, 746
RseI	CAYNNNNRTG	1 cut(s)	81
SaqAI	TTAA	4 cut(s)	20, 692, 741, 770
SatI	GCNGC	4 cut(s)	336, 347, 466, 475
Sau3AI	GATC	2 cut(s)	362, 490
Sau96I	GGNCC	4 cut(s)	14, 63, 323, 709
SchI	GAGTC	2 cut(s)	111, 136
ScrFI	CCNGG	1 cut(s)	600
SexAI	ACCWGGT	1 cut(s)	598
SfaNI	GCATC	4 cut(s)	359, 562, 651, 769
SinI	GGWCC	2 cut(s)	323, 709
SmiMI	CAYNNNNRTG	1 cut(s)	81
SmlI	CTYRAG	3 cut(s)	50, 122, 650
SmoI	CTYRAG	3 cut(s)	50, 122, 650
Sse9I	AATT	6 cut(s)	26, 265, 305, 482, 542, 689
SseBI	AGGCCT	1 cut(s)	255
SsiI	CCGC	1 cut(s)	474
SspMI	CTAG	5 cut(s)	99, 257, 327, 578, 636
StuI	AGGCCT	1 cut(s)	255
StyD4I	CCNGG	1 cut(s)	598
TaiI	ACGT	1 cut(s)	252
TasI	AATT	6 cut(s)	26, 265, 305, 482, 542, 689
TatI	WGTACW	1 cut(s)	745
TauI	GCSGC	1 cut(s)	477
TfiI	GAWTC	1 cut(s)	521
Tru1I	TTAA	4 cut(s)	20, 692, 741, 770
Tru9I	TTAA	4 cut(s)	20, 692, 741, 770
TscAI	CASTG	2 cut(s)	356, 769
TseI	GCWGC	3 cut(s)	335, 346, 465
TspDTI	ATGAA	7 cut(s)	34, 97, 101, 297, 298, 741, 743
TspRI	CASTG	2 cut(s)	356, 769
VpaK11BI	GGWCC	2 cut(s)	323, 709
VspI	ATTAAT	1 cut(s)	692
XapI	RAATTY	1 cut(s)	265
XbaI	TCTAGA	2 cut(s)	98, 577
XspI	CTAG	5 cut(s)	99, 257, 327, 578, 636

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.