Rh2DG034200

Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr2D
OG0002341
Physical Location & Seq
Reverse (-)
2212192 .. 2215491
3300 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh2DG034200.1

Sequence Viewer

Length: 2085 bp
ATGGACGTCGATCACGGTCACGGCTACGGTTCTCATTTGGTTAGAATGGAAGCGGCGGACGTCGCCTACGGATTTCGGCCTCGTGATGTACCCGAGAGACTGATATACGATGACGAAAGCACACCGAGCATAGATGATGAGAGTCACTGGATACAGAAGCAACTTGAACTGTTGTTTGGTCCATTGAGCAGCGATGACATCTCCAGGTTTCTGTACATGCACCATGTGCGAAAACTGGATATTCCTTTTATTGCAATGTACTTGAAAGAGGACTGCCTTAGCTTACTGAAAGATCATCCTGAACAACCTGAAGAAGAAAAATCTAAAGTGAAGTGGTACAGGATTCTGTGGGCCGCTCAGGAATTGCACAAAAATTGGTTGCTGTTTCAGAATCAGAAAAGGGCTTTGCGATTTTCCTACAATAAGCGCTTTGAGGAAGAATCTCGACTAGGACTCATACATGATAAGGCGGCTCCACAGCTTTTTGAATCAATTATCAACTCACTCCAAGCTGCAGAGTCACAGAGGGAGGTTGAGGATATCAACAGCAAGTTTAACTTGCATTTCCCTGCAACTGAGGGTCCGGCTACTGTTGTTATCTGTAGTGATCCAGGTGTCAGTAGAGCTAAAGACTTGTTACTTACGGAATATGGAAGGGCTTTGTTCAATAAAGTCTCTGTGGCACCGCCATATCAACGGAATGAAACTGCACCACCCAGGGTCATGGCTTGCTGTTGGGGCCCTGGGGACCCTGCAACAACTTTAGTGATGTTAGATTCATGTGGGGAGATTCTAGATGTACTTTGCACCGGGCCTCTCAGCTGGGAGTCTCTTACCTGGACCATACCCTTCTTTGATGAAGCTACTCAACAGCGTATGAATTGTGATCAAGAACGTATTTTGAAGTTTGTGACTGATCACCAACCTGATGTCACTATCATAGGAGCGGCTAATATGTCTTGTCCTCTCCTGAGAGAACAACTGCTTTGGGTGAGTGATACAATGATGATGAAACCTAACAGTAGAGCAAGCCCCCTAAGGATTGTGTATGGGGATGAATCTCTGGCTCGCCTATATGAGAATTCTGAGATTTCATCGGAGCAGTTACCTGGACGATCAGGCATTGCCAGGCGGGCTGTGGCTCTAGGGCGTTATCTTCAAAATCCATTGGCAATGGTTGCCACATTGTGTGGAGCTGGAAGAGAAATCCTATCTTGGAAACTACTCAATTCTCCTGATGAGAACTATCTCAACCCGGACGAGAAGTATGCAGTGATTGAACAGGTCATGATAGATGTGACAAACCAGGTTGGCCTAGACATAAATTTGGCTATAAACCATGAATGGTTATTTGCACCTTTGCAATTTATTTCTGGGCTTGGACCTCAAATGGCAGCATCTCTGAAGAAGTCATTGGTAAAATCTGGTAAAGTATCTACTCGAAACGAGTTTGCAACATTACATGGGATGGGTGCATGGGTGTATGTTAATGCAGTTGGTTTCTTGCGTGTGCAGCAGAGTGGGATGCTTGCTGCCAGCGGCATCAGCAGCCAATTTTTTGCTCTGTTGGATGATACAAGAATACATCCAGATTTATACTGTTTTGCAGAACAAATGGCCCGAGATGTTTATGGTGACATGAATGTTCTGGTGCAGAGCATTAGGGATCTACCTAGTTACCTCGAGAAGCTTGACATCGAAGCATATGCTAGAAGCACAGGATTGCATTGTATGATGCAAACATTGTGCTGTATAAGGGAAGAGTTAATACAAGGGTTCCAAGAGTGGCGTAAAAAATATGAAGAACTAAGTGATGATGACATGTTCTATATGATGACCGGTGAAACTCGCGACACCCTCTCAGAAGGAAGCATTGTGCAGGCCACAATTCGCAGGGTGCTTTCCAAAACAGCAATTTGTACTGTGGGAGCTGGGTTGATTTGTTTGCTCTGGAGAGATGACTTTAAAGTTGATGGGAGGGAAATTTCAGACTTATCACAAGTAATGAAGGTGGGTGACACTATCACTTGCAAGATCAAATCTCTTCGAAAGAAGCAATGGGATGTGAAACTCTGTAGTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000785 GO:0000988 GO:0000990 GO:0000991 GO:0002637 GO:0002682 GO:0002694 GO:0002697 GO:0002700 GO:0002703 GO:0002706 GO:0002712 GO:0002819 GO:0002822 GO:0002889 GO:0003006 GO:0003674 GO:0003682 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006325 GO:0006338 GO:0006342 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009506 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0010793 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030054 GO:0031056 GO:0031057 GO:0031060 GO:0031061 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031491 GO:0031974 GO:0031981 GO:0032239 GO:0032268 GO:0032269 GO:0032386 GO:0032501 GO:0032502 GO:0032774 GO:0032784 GO:0032786 GO:0032879 GO:0032880 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0033157 GO:0034243 GO:0034641 GO:0034645 GO:0034654 GO:0034728 GO:0035327 GO:0040029 GO:0042393 GO:0042789 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0043954 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045191 GO:0045595 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0046822 GO:0046825 GO:0046831 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050684 GO:0050776 GO:0050789 GO:0050793 GO:0050794 GO:0050864 GO:0050865 GO:0051049 GO:0051052 GO:0051128 GO:0051129 GO:0051147 GO:0051171 GO:0051172 GO:0051173 GO:0051223 GO:0051239 GO:0051246 GO:0051248 GO:0051249 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0055044 GO:0060255 GO:0060341 GO:0061085 GO:0061086 GO:0061458 GO:0065007 GO:0070013 GO:0070201 GO:0070827 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090087 GO:0090304 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902275 GO:1902679 GO:1902680 GO:1903311 GO:1903506 GO:1903507 GO:1903508 GO:1903827 GO:1905268 GO:2000026 GO:2000112 GO:2000113 GO:2000197 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DLD HHH_7 HTH_44 SH2_2 SPT6_acidic YqgF

Protein Analysis

694

Amino Acids

78.77

Weight (kDa)

5.33

Isoelectric Point (pI)

42.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YqgF PF14639 241 - 397 2e-14 Holliday-junction resolvase-like of SPT6
HHH_7 PF14635 403 - 504 2.1e-14 Helix-hairpin-helix motif
Spt6_S1 PF21710 608 - 690 1.6e-10 Spt6, S1/OB domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 2 cut(s) 9, 63
AccB1I GGYRCC 1 cut(s) 682
AccBSI CCGCTC 2 cut(s) 356, 947
AccII CGCG 1 cut(s) 1851
AciI CCGC 8 cut(s) 53, 56, 354, 470, 686, 947, 1132, 1539
AclWI GGATC 2 cut(s) 602, 1674
AcsI RAATTY 3 cut(s) 1081, 1324, 1983
AcuI CTGAAG 2 cut(s) 330, 1424
AcyI GRCGYC 2 cut(s) 6, 60
AdeI CACNNNGTG 2 cut(s) 226, 1188
AfaI GTAC 6 cut(s) 90, 215, 260, 338, 801, 1921
AfeI AGCGCT 1 cut(s) 428
AflIII ACRYGT 1 cut(s) 1821
AgeI ACCGGT 1 cut(s) 1838
AgsI TTSAA 7 cut(s) 167, 265, 488, 667, 904, 1160, 1280
AjnI CCWGG 8 cut(s) 203, 610, 716, 742, 836, 1108, 1127, 1305
AjuI GAANNNNNNNTTGG 4 cut(s) 159, 191, 1397, 1429
AluBI AGCT 9 cut(s) 282, 481, 512, 626, 822, 863, 1196, 1690, 1931
AluI AGCT 9 cut(s) 282, 481, 512, 626, 822, 863, 1196, 1690, 1931
Alw26I GTCTC 3 cut(s) 91, 679, 834
AlwI GGATC 2 cut(s) 602, 1674
Ama87I CYCGRG 3 cut(s) 92, 1620, 1682
Aor51HI AGCGCT 1 cut(s) 428
AoxI GGCC 7 cut(s) 77, 351, 739, 812, 1312, 1617, 1881
ApaI GGGCCC 1 cut(s) 743
ApeKI GCWGC 6 cut(s) 189, 512, 1394, 1513, 1532, 1548
ApoI RAATTY 3 cut(s) 1081, 1324, 1983
AsiGI ACCGGT 1 cut(s) 1838
AspLEI GCGC 1 cut(s) 429
AsuC2I CCSGG 2 cut(s) 811, 1256
AsuHPI GGTGA 5 cut(s) 911, 1003, 1646, 1853, 2027
AsuII TTCGAA 1 cut(s) 2047
AvaI CYCGRG 3 cut(s) 92, 1620, 1682
AvaII GGWCC 5 cut(s) 179, 581, 748, 840, 1382
AxyI CCTNAGG 1 cut(s) 1037
BaeGI GKGCMC 1 cut(s) 743
BanI GGYRCC 1 cut(s) 682
BanII GRGCYC 1 cut(s) 743
BarI GAAGNNNNNNTAC 2 cut(s) 1752, 1784
BauI CACGAG 1 cut(s) 81
BbvI GCAGC 6 cut(s) 201, 499, 1406, 1519, 1525, 1560
BccI CCATC 2 cut(s) 1462, 1967
BceAI ACGGC 1 cut(s) 37
BcgI CGANNNNNNTGC 4 cut(s) 1250, 1284, 1688, 1722
BciT130I CCWGG 8 cut(s) 205, 612, 718, 744, 838, 1110, 1129, 1307
BciVI GTATCC 1 cut(s) 144
BclI TGATCA 2 cut(s) 886, 916
BcnI CCSGG 2 cut(s) 811, 1256
BcoDI GTCTC 3 cut(s) 91, 679, 834
BfaI CTAG 7 cut(s) 449, 794, 1145, 1316, 1674, 1710, 2083
BfmI CTRYAG 3 cut(s) 513, 601, 2074
BfoI RGCGCY 1 cut(s) 430
BfuI GTATCC 1 cut(s) 144
BglI GCCNNNNNGGC 1 cut(s) 1133
Bme18I GGWCC 5 cut(s) 179, 581, 748, 840, 1382
BmeT110I CYCGRG 3 cut(s) 92, 1620, 1682
BmiI GGNNCC 8 cut(s) 474, 582, 684, 740, 741, 749, 750, 1778
BmsI GCATC 4 cut(s) 1406, 1515, 1551, 1725
BpmI CTGGAG 2 cut(s) 187, 1972
Bpu10I CCTNAGC 2 cut(s) 278, 357
Bpu14I TTCGAA 1 cut(s) 2047
BpuMI CCSGG 2 cut(s) 811, 1256
BsaHI GRCGYC 2 cut(s) 6, 60
BsaJI CCNNGG 4 cut(s) 716, 717, 742, 743
BsaWI WCCGGW 1 cut(s) 1838
Bse118I RCCGGY 1 cut(s) 1838
Bse1I ACTGG 2 cut(s) 152, 240
Bse21I CCTNAGG 1 cut(s) 1037
Bse3DI GCAATG 4 cut(s) 261, 1122, 1179, 2063
BseBI CCWGG 8 cut(s) 205, 612, 718, 744, 838, 1110, 1129, 1307
BseDI CCNNGG 4 cut(s) 716, 717, 742, 743
BseGI GGATG 7 cut(s) 295, 1060, 1473, 1530, 1576, 1585, 2068
BseMI GCAATG 4 cut(s) 261, 1122, 1179, 2063
BseMII CTCAG 6 cut(s) 371, 567, 832, 962, 1077, 1875
BseNI ACTGG 2 cut(s) 152, 240
BseSI GKGCMC 1 cut(s) 743
BseXI GCAGC 6 cut(s) 201, 499, 1406, 1519, 1525, 1560
BseYI CCCAGC 2 cut(s) 822, 1931
BsgI GTGCAG 4 cut(s) 693, 1532, 1673, 1898
Bsh1236I CGCG 1 cut(s) 1851
BshFI GGCC 7 cut(s) 79, 353, 741, 814, 1314, 1619, 1883
BshNI GGYRCC 1 cut(s) 682
BshTI ACCGGT 1 cut(s) 1838
BsiHKCI CYCGRG 3 cut(s) 92, 1620, 1682
BsiSI CCGG 4 cut(s) 584, 810, 1256, 1839
BslFI GGGAC 1 cut(s) 761
BsmAI GTCTC 3 cut(s) 91, 679, 834
BsmFI GGGAC 1 cut(s) 761
BsnI GGCC 7 cut(s) 79, 353, 741, 814, 1314, 1619, 1883
BsoBI CYCGRG 3 cut(s) 92, 1620, 1682
Bsp119I TTCGAA 1 cut(s) 2047
Bsp120I GGGCCC 1 cut(s) 739
Bsp1286I GDGCHC 1 cut(s) 743
Bsp1407I TGTACA 1 cut(s) 213
Bsp143I GATC 8 cut(s) 10, 292, 607, 886, 916, 1115, 1666, 2034
Bsp68I TCGCGA 1 cut(s) 1851
BspACI CCGC 8 cut(s) 53, 56, 354, 470, 686, 947, 1132, 1539
BspANI GGCC 7 cut(s) 79, 353, 741, 814, 1314, 1619, 1883
BspCNI CTCAG 6 cut(s) 370, 568, 831, 963, 1078, 1874
BspFNI CGCG 1 cut(s) 1851
BspHI TCATGA 1 cut(s) 1287
BspLI GGNNCC 8 cut(s) 474, 582, 684, 740, 741, 749, 750, 1778
BspMAI CTGCAG 1 cut(s) 517
BspPI GGATC 2 cut(s) 602, 1674
BspT104I TTCGAA 1 cut(s) 2047
BspT107I GGYRCC 1 cut(s) 682
BsrBI CCGCTC 2 cut(s) 356, 947
BsrDI GCAATG 4 cut(s) 261, 1122, 1179, 2063
BsrFI RCCGGY 1 cut(s) 1838
BsrGI TGTACA 1 cut(s) 213
BsrI ACTGG 2 cut(s) 152, 240
BssAI RCCGGY 1 cut(s) 1838
BssECI CCNNGG 4 cut(s) 716, 717, 742, 743
BssMI GATC 8 cut(s) 10, 292, 607, 886, 916, 1115, 1666, 2034
BssNI GRCGYC 2 cut(s) 6, 60
BssSI CACGAG 1 cut(s) 81
Bst2BI CACGAG 1 cut(s) 81
Bst2UI CCWGG 8 cut(s) 205, 612, 718, 744, 838, 1110, 1129, 1307
Bst4CI ACNGT 7 cut(s) 17, 29, 171, 592, 1022, 1601, 1924
Bst6I CTCTTC 3 cut(s) 1195, 1755, 2049
BstACI GRCGYC 2 cut(s) 6, 60
BstAPI GCANNNNNTGC 2 cut(s) 226, 1178
BstAUI TGTACA 1 cut(s) 213
BstBI TTCGAA 1 cut(s) 2047
BstC8I GCNNGC 7 cut(s) 730, 1030, 1069, 1134, 1530, 1537, 1881
BstDEI CTNAG 9 cut(s) 278, 357, 576, 818, 971, 1037, 1086, 1808, 1861
BstF5I GGATG 7 cut(s) 295, 1060, 1473, 1530, 1576, 1585, 2068
BstFNI CGCG 1 cut(s) 1851
BstH2I RGCGCY 1 cut(s) 430
BstHHI GCGC 1 cut(s) 429
BstKTI GATC 8 cut(s) 13, 295, 610, 889, 919, 1118, 1669, 2037
BstMAI GTCTC 3 cut(s) 91, 679, 834
BstMBI GATC 8 cut(s) 10, 292, 607, 886, 916, 1115, 1666, 2034
BstMWI GCNNNNNNNGC 9 cut(s) 62, 126, 226, 738, 1133, 1178, 1513, 1545, 1548
BstNI CCWGG 8 cut(s) 205, 612, 718, 744, 838, 1110, 1129, 1307
BstNSI RCATGY 2 cut(s) 220, 1825
BstSFI CTRYAG 3 cut(s) 513, 601, 2074
BstSLI GKGCMC 1 cut(s) 743
BstUI CGCG 1 cut(s) 1851
BstV1I GCAGC 6 cut(s) 201, 499, 1406, 1519, 1525, 1560
BstX2I RGATCY 1 cut(s) 1666
BstXI CCANNNNNNTGG 1 cut(s) 724
BstYI RGATCY 1 cut(s) 1666
Bsu36I CCTNAGG 1 cut(s) 1037
BsuI GTATCC 1 cut(s) 144
BsuRI GGCC 7 cut(s) 79, 353, 741, 814, 1314, 1619, 1883
BtgZI GCGATG 1 cut(s) 207
BtsCI GGATG 7 cut(s) 295, 1060, 1473, 1530, 1576, 1585, 2068
BtsI GCAGTG 1 cut(s) 1278
BtsIMutI CAGTG 2 cut(s) 145, 1278
BtuMI TCGCGA 1 cut(s) 1851
Cac8I GCNNGC 7 cut(s) 730, 1030, 1069, 1134, 1530, 1537, 1881
CciI TCATGA 1 cut(s) 1287
CfoI GCGC 1 cut(s) 429
Cfr10I RCCGGY 1 cut(s) 1838
CsiI ACCWGGT 1 cut(s) 1305
Csp6I GTAC 6 cut(s) 89, 214, 259, 337, 800, 1920
CspAI ACCGGT 1 cut(s) 1838
CviQI GTAC 6 cut(s) 89, 214, 259, 337, 800, 1920
DdeI CTNAG 9 cut(s) 278, 357, 576, 818, 971, 1037, 1086, 1808, 1861
DpnI GATC 8 cut(s) 12, 294, 609, 888, 918, 1117, 1668, 2036
DpnII GATC 8 cut(s) 10, 292, 607, 886, 916, 1115, 1666, 2034
DraI TTTAAA 1 cut(s) 1966
DraIII CACNNNGTG 2 cut(s) 226, 1188
Eam1104I CTCTTC 3 cut(s) 1195, 1755, 2049
EarI CTCTTC 3 cut(s) 1195, 1755, 2049
EciI GGCGGA 1 cut(s) 71
Eco24I GRGCYC 1 cut(s) 743
Eco32I GATATC 1 cut(s) 541
Eco47I GGWCC 5 cut(s) 179, 581, 748, 840, 1382
Eco47III AGCGCT 1 cut(s) 428
Eco57I CTGAAG 2 cut(s) 330, 1424
Eco81I CCTNAGG 1 cut(s) 1037
Eco88I CYCGRG 3 cut(s) 92, 1620, 1682
EcoO109I RGGNCCY 3 cut(s) 739, 740, 748
EcoRI GAATTC 1 cut(s) 1081
EcoRII CCWGG 8 cut(s) 203, 610, 716, 742, 836, 1108, 1127, 1305
EcoRV GATATC 1 cut(s) 541
EcoT38I GRGCYC 1 cut(s) 743
FalI AAGNNNNNCTT 2 cut(s) 542, 574
FaqI GGGAC 1 cut(s) 761
FauI CCCGC 1 cut(s) 1125
FauNDI CATATG 1 cut(s) 1705
FbaI TGATCA 2 cut(s) 886, 916
FokI GGATG 7 cut(s) 282, 1067, 1480, 1537, 1572, 1583, 2075
FriOI GRGCYC 1 cut(s) 743
FspBI CTAG 7 cut(s) 449, 794, 1145, 1316, 1674, 1710, 2083
GlaI GCGC 1 cut(s) 428
GsaI CCCAGC 2 cut(s) 826, 1935
GsuI CTGGAG 2 cut(s) 187, 1972
HaeII RGCGCY 1 cut(s) 430
HaeIII GGCC 7 cut(s) 79, 353, 741, 814, 1314, 1619, 1883
HapII CCGG 4 cut(s) 584, 810, 1256, 1839
HhaI GCGC 1 cut(s) 429
Hin1I GRCGYC 2 cut(s) 6, 60
Hin6I GCGC 1 cut(s) 427
HinP1I GCGC 1 cut(s) 427
HindIII AAGCTT 1 cut(s) 1688
HpaII CCGG 4 cut(s) 584, 810, 1256, 1839
HphI GGTGA 5 cut(s) 911, 1003, 1646, 1853, 2027
Hpy188I TCNGA 7 cut(s) 390, 396, 1087, 1099, 1404, 1864, 1990
Hpy99I CGWCG 2 cut(s) 11, 65
HpyAV CCTTC 4 cut(s) 648, 859, 1859, 2002
HpyCH4III ACNGT 7 cut(s) 17, 29, 171, 592, 1022, 1601, 1924
HpyCH4IV ACGT 3 cut(s) 6, 60, 895
HpyF10VI GCNNNNNNNGC 9 cut(s) 62, 126, 226, 738, 1133, 1178, 1513, 1545, 1548
HpyF3I CTNAG 9 cut(s) 278, 357, 576, 818, 971, 1037, 1086, 1808, 1861
HpySE526I ACGT 3 cut(s) 6, 60, 895
Hsp92I GRCGYC 2 cut(s) 6, 60
HspAI GCGC 1 cut(s) 427
KflI GGGWCCC 1 cut(s) 748
Ksp22I TGATCA 2 cut(s) 886, 916
Kzo9I GATC 8 cut(s) 10, 292, 607, 886, 916, 1115, 1666, 2034
LmnI GCTCC 5 cut(s) 478, 944, 1099, 1193, 1928
Lsp1109I GCAGC 6 cut(s) 201, 499, 1406, 1519, 1525, 1560
LweI GCATC 4 cut(s) 1406, 1515, 1551, 1725
MabI ACCWGGT 1 cut(s) 1305
MaeI CTAG 7 cut(s) 449, 794, 1145, 1316, 1674, 1710, 2083
MaeII ACGT 3 cut(s) 6, 60, 895
MalI GATC 8 cut(s) 12, 294, 609, 888, 918, 1117, 1668, 2036
MbiI CCGCTC 2 cut(s) 356, 947
MboI GATC 8 cut(s) 10, 292, 607, 886, 916, 1115, 1666, 2034
MboII GAAGA 9 cut(s) 323, 326, 449, 1148, 1212, 1417, 1772, 1814, 2036
MflI RGATCY 1 cut(s) 1666
MhlI GDGCHC 1 cut(s) 743
MlyI GAGTC 4 cut(s) 151, 447, 527, 836
MmeI TCCRAC 1 cut(s) 1548
MseI TTAA 4 cut(s) 555, 1488, 1766, 1965
MspA1I CMGCKG 2 cut(s) 822, 1539
MspI CCGG 4 cut(s) 584, 810, 1256, 1839
MvaI CCWGG 8 cut(s) 205, 612, 718, 744, 838, 1110, 1129, 1307
MvnI CGCG 1 cut(s) 1851
MwoI GCNNNNNNNGC 9 cut(s) 62, 126, 226, 738, 1133, 1178, 1513, 1545, 1548
NciI CCSGG 2 cut(s) 811, 1256
NdeI CATATG 1 cut(s) 1705
NdeII GATC 8 cut(s) 10, 292, 607, 886, 916, 1115, 1666, 2034
NlaIV GGNNCC 8 cut(s) 474, 582, 684, 740, 741, 749, 750, 1778
NmuCI GTSAC 8 cut(s) 17, 143, 519, 910, 931, 1297, 1634, 2015
NruI TCGCGA 1 cut(s) 1851
NspI RCATGY 2 cut(s) 220, 1825
NspV TTCGAA 1 cut(s) 2047
PaeR7I CTCGAG 1 cut(s) 1682
PagI TCATGA 1 cut(s) 1287
PasI CCCWGGG 2 cut(s) 717, 743
PciI ACATGT 1 cut(s) 1821
PfeI GAWTC 7 cut(s) 343, 391, 440, 488, 776, 790, 1058
PinAI ACCGGT 1 cut(s) 1838
PleI GAGTC 4 cut(s) 150, 447, 526, 835
PpsI GAGTC 4 cut(s) 150, 447, 526, 835
PpuMI RGGWCCY 1 cut(s) 748
PscI ACATGT 1 cut(s) 1821
Psp5II RGGWCCY 1 cut(s) 748
Psp6I CCWGG 8 cut(s) 203, 610, 716, 742, 836, 1108, 1127, 1305
PspFI CCCAGC 2 cut(s) 822, 1931
PspGI CCWGG 8 cut(s) 203, 610, 716, 742, 836, 1108, 1127, 1305
PspN4I GGNNCC 8 cut(s) 474, 582, 684, 740, 741, 749, 750, 1778
PspOMI GGGCCC 1 cut(s) 739
PspPPI RGGWCCY 1 cut(s) 748
PstI CTGCAG 1 cut(s) 517
PsuI RGATCY 1 cut(s) 1666
PvuII CAGCTG 1 cut(s) 822
RruI TCGCGA 1 cut(s) 1851
RsaI GTAC 6 cut(s) 90, 215, 260, 338, 801, 1921
RsaNI GTAC 6 cut(s) 89, 214, 259, 337, 800, 1920
SaqAI TTAA 4 cut(s) 555, 1488, 1766, 1965
Sau3AI GATC 8 cut(s) 10, 292, 607, 886, 916, 1115, 1666, 2034
SchI GAGTC 4 cut(s) 151, 447, 527, 836
SduI GDGCHC 1 cut(s) 743
SexAI ACCWGGT 1 cut(s) 1305
SfaNI GCATC 4 cut(s) 1406, 1515, 1551, 1725
SfcI CTRYAG 3 cut(s) 513, 601, 2074
Sfr274I CTCGAG 1 cut(s) 1682
SfuI TTCGAA 1 cut(s) 2047
SinI GGWCC 5 cut(s) 179, 581, 748, 840, 1382
SlaI CTCGAG 1 cut(s) 1682
SmlI CTYRAG 1 cut(s) 1682
SmoI CTYRAG 1 cut(s) 1682
SsiI CCGC 8 cut(s) 53, 56, 354, 470, 686, 947, 1132, 1539
SspMI CTAG 7 cut(s) 449, 794, 1145, 1316, 1674, 1710, 2083
TaaI ACNGT 7 cut(s) 17, 29, 171, 592, 1022, 1601, 1924
TaiI ACGT 3 cut(s) 9, 63, 898
TaqI TCGA 6 cut(s) 9, 445, 1441, 1683, 1698, 2047
TatI WGTACW 4 cut(s) 213, 258, 799, 1919
TauI GCSGC 5 cut(s) 56, 356, 473, 950, 1542
TfiI GAWTC 7 cut(s) 343, 391, 440, 488, 776, 790, 1058
Tru1I TTAA 4 cut(s) 555, 1488, 1766, 1965
Tru9I TTAA 4 cut(s) 555, 1488, 1766, 1965
TscAI CASTG 2 cut(s) 152, 1278
TseFI GTSAC 8 cut(s) 17, 143, 519, 910, 931, 1297, 1634, 2015
TseI GCWGC 6 cut(s) 189, 512, 1394, 1513, 1532, 1548
Tsp45I GTSAC 8 cut(s) 17, 143, 519, 910, 931, 1297, 1634, 2015
TspGWI ACGGA 3 cut(s) 84, 659, 712
TspRI CASTG 2 cut(s) 152, 1278
VpaK11BI GGWCC 5 cut(s) 179, 581, 748, 840, 1382
XapI RAATTY 3 cut(s) 1081, 1324, 1983
XbaI TCTAGA 1 cut(s) 793
XceI RCATGY 2 cut(s) 220, 1825
XcmI CCANNNNNNNNNTGG 1 cut(s) 1135
XhoI CTCGAG 1 cut(s) 1682
XspI CTAG 7 cut(s) 449, 794, 1145, 1316, 1674, 1710, 2083
ZraI GACGTC 2 cut(s) 7, 61
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.