Rw2G002690

Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
OG0002341
Physical Location & Seq
Reverse (-)
2381659 .. 2384894
3236 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G002690.1

Sequence Viewer

Length: 1932 bp
ATGGAAGCGGCGGACGTCGCCTACGGATTTCGGCCTCGTGATGTACCCGAGAGACTGATATACGATGACGAAAGCACACCGGAAGAAATTAGCATAGATGATGAGAGTCACTGGATACAGAAGCAGCTTGAACTGTTGTTTGGTCCATTGAGCAGCGATGACATCTCCAGGTTTTTGTACATGCACCATGTGCGAAAACTGGATATTCCTTTTATTGCAATGTACTTGAAAGAGGACTGCCTTAGCTTATTGAAAGATCATCCTGAACAACCTGAAGAAGAAAAATCTAAAGTGAAGTGGTACAGGATTCTGTGGGCCGCTCAGGAATTGCACAAAAATTGGTTGCTGTTTCAGAATCAGAAAAGGGCTTTGCGATTTTCCTACAATAAGCGCTTTGAGGAAGAATCTCGACTAGGACTCATACATGATAAGGCGGCTCCACAGCTTTTTGAATCAATTATCAACTCACTCCAAGCTGCAGAGTCACAGAGGGAGGTTGAGGATATCAACAGCAAGTTTAACTTGCATTTCCCTGCAACTGAGGGTCCGGCTACTGTTGTTATCTGTAGTGATCCAGGTGTCAGTAGAGCTAAAGACTTGTTACTTACGGAATATGGAAGGGCTTTGTTCAATAAAGTCTCTGTGGCACCGCCATATCAACGGAATGAAACTGCACCACCCAGGGTCATGGCTTGCTGTTGGGGCCCTGGGGAACCTGCAACAACTTTAGTGATGTTAGATTCATGTGGGGAGATTCTAGATGTACTTTGCACCGGGCCTCTCAGCTGGGGTCTCTTACCTGGACCATACCCTTCTTTGATGAAGCTACTCAACAGCGTGAGTGATACAATGATGATGAAACCTAACAGTAGAGCAAGCCCCCTAAGGATTGTGTATGGGGATGAATCTCTGGCTCGCCTATATGAGAATTCTGAGATTTCATCGGAGCAGTTACCTGGACAATCAGGCATTGCCAGGCGGGCTGTGGCTCTAGGGCGTTATCTTCAAAATCCATTGGCAATGGTTGCCACATTGTGTGGAGCTGGAAGAGAAATCCTATCTTGGAAACTACTCAATTCTCCTGATGAGAACTATCTCAACCCGGATGAGAAGTATGCAGTGATTGAACAGGTCATGATAGATGTGACAAACCAGGTTGGCCTAGACATAAATTTGGCCATAAACCATGAATGGTTATTTGCACCTTTGCAATTTATTTCTGGGCTTGGACCTCAAATGGCAGCATCTCTGAAGAAGTCATTGGTAAAATCTGGTAAAGTATCTACTCGAAACGAGTTTGCAACATTACATGGGATGGGTGCATGGGTGTATGTTAATGCAGTTGGTTTCTTGCGTGTGCGGCTGAGTGGGATGCTTGCTGCTAGCAGCATCAGCAGCCAATTTTTTGCTCTGTTGGATGATACAAGAATACATCCAGATTTATACTGTTTTGCAGAACAAATGGCCCGAGATGTTTATGGTGACATGGATGTTCTGGTGCAGAGCATTAGGGATCTACCTAGTTACCTCGAGAAGCTTGACATCGAAGCATATGCTAGAAGCAGAGGATTGCATTATATGATGCAAACATTGTGCTGTATAAGGGAAGAGTTAATACAAGGGTTCCAAGAGTGGCGTAAAAAATATGAAGAACTAAGTGATGATGACATGTTCTATATGATGACCGGTGAAACTCGCGACACCCTCTCGGAAGGAAGCATTGTGCAGGCCACAATTCGCAGGGTGCTTTCCAAAACAGCAATTTGTACTGTGGGAGCTGGGTTGATTTGTTTGCTCTGGAGAGATGACTTTAAAGTTGATGGGAGGGAAATTTCAGACTTATCACAAGTAATGAAGGTGGGTGACACTATCACTTGCAAGATCAAATCTCTTCGAAAGAAGCAATGGGATGTGAAACTCTGTAGTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000785 GO:0000988 GO:0000990 GO:0000991 GO:0002637 GO:0002682 GO:0002694 GO:0002697 GO:0002700 GO:0002703 GO:0002706 GO:0002712 GO:0002819 GO:0002822 GO:0002889 GO:0003006 GO:0003674 GO:0003682 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006325 GO:0006338 GO:0006342 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009506 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0010793 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030054 GO:0031056 GO:0031057 GO:0031060 GO:0031061 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031491 GO:0031974 GO:0031981 GO:0032239 GO:0032268 GO:0032269 GO:0032386 GO:0032501 GO:0032502 GO:0032774 GO:0032784 GO:0032786 GO:0032879 GO:0032880 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0033157 GO:0034243 GO:0034641 GO:0034645 GO:0034654 GO:0034728 GO:0035327 GO:0040029 GO:0042393 GO:0042789 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0043954 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045191 GO:0045595 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0046822 GO:0046825 GO:0046831 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050684 GO:0050776 GO:0050789 GO:0050793 GO:0050794 GO:0050864 GO:0050865 GO:0051049 GO:0051052 GO:0051128 GO:0051129 GO:0051147 GO:0051171 GO:0051172 GO:0051173 GO:0051223 GO:0051239 GO:0051246 GO:0051248 GO:0051249 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0055044 GO:0060255 GO:0060341 GO:0061085 GO:0061086 GO:0061458 GO:0065007 GO:0070013 GO:0070201 GO:0070827 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090087 GO:0090304 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902275 GO:1902679 GO:1902680 GO:1903311 GO:1903506 GO:1903507 GO:1903508 GO:1903827 GO:1905268 GO:2000026 GO:2000112 GO:2000113 GO:2000197 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DLD HHH_7 HTH_44 SH2_2 SPT6_acidic YqgF

Protein Analysis

643

Amino Acids

72.87

Weight (kDa)

5.35

Isoelectric Point (pI)

45.02

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
YqgF PF14639 268 - 346 7e-10 Holliday-junction resolvase-like of SPT6
HHH_7 PF14635 352 - 453 2.3e-14 Helix-hairpin-helix motif
Spt6_S1 PF21710 557 - 639 1.5e-10 Spt6, S1/OB domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 18
Acc36I ACCTGC 1 cut(s) 724
AccB1I GGYRCC 1 cut(s) 646
AccBSI CCGCTC 1 cut(s) 320
AccII CGCG 1 cut(s) 1698
AciI CCGC 7 cut(s) 8, 11, 318, 434, 650, 979, 1360
AclWI GGATC 2 cut(s) 566, 1521
AcoI YGGCCR 1 cut(s) 1176
AcsI RAATTY 3 cut(s) 928, 1171, 1830
AcuI CTGAAG 2 cut(s) 294, 1271
AcyI GRCGYC 1 cut(s) 15
AdeI CACNNNGTG 2 cut(s) 190, 1035
AfaI GTAC 6 cut(s) 45, 179, 224, 302, 765, 1768
AfeI AGCGCT 1 cut(s) 392
AflIII ACRYGT 1 cut(s) 1668
AgeI ACCGGT 1 cut(s) 1685
AgsI TTSAA 7 cut(s) 131, 229, 253, 452, 631, 1007, 1127
AjnI CCWGG 8 cut(s) 167, 574, 680, 706, 799, 955, 974, 1152
AjuI GAANNNNNNNTTGG 4 cut(s) 123, 155, 1244, 1276
Alw26I GTCTC 3 cut(s) 46, 643, 797
AlwI GGATC 2 cut(s) 566, 1521
Ama87I CYCGRG 3 cut(s) 47, 1467, 1529
Aor51HI AGCGCT 1 cut(s) 392
AoxI GGCC 8 cut(s) 32, 315, 703, 776, 1159, 1176, 1464, 1728
ApaI GGGCCC 1 cut(s) 707
ApeKI GCWGC 7 cut(s) 124, 153, 476, 1241, 1379, 1386, 1395
ApoI RAATTY 3 cut(s) 928, 1171, 1830
AsiGI ACCGGT 1 cut(s) 1685
AspLEI GCGC 1 cut(s) 393
AspS9I GGNCC 9 cut(s) 143, 315, 545, 703, 704, 776, 803, 1229, 1465
AsuC2I CCSGG 2 cut(s) 775, 1103
AsuHPI GGTGA 3 cut(s) 1493, 1700, 1874
AsuII TTCGAA 1 cut(s) 1894
AsuNHI GCTAGC 1 cut(s) 1382
AvaI CYCGRG 3 cut(s) 47, 1467, 1529
AvaII GGWCC 4 cut(s) 143, 545, 803, 1229
AxyI CCTNAGG 1 cut(s) 884
BaeGI GKGCMC 1 cut(s) 707
BalI TGGCCA 1 cut(s) 1178
BanI GGYRCC 1 cut(s) 646
BanII GRGCYC 1 cut(s) 707
BarI GAAGNNNNNNTAC 2 cut(s) 1599, 1631
BauI CACGAG 1 cut(s) 36
BbvI GCAGC 7 cut(s) 136, 165, 463, 1253, 1366, 1398, 1407
BccI CCATC 2 cut(s) 1309, 1814
BcgI CGANNNNNNTGC 2 cut(s) 1535, 1569
BciT130I CCWGG 8 cut(s) 169, 576, 682, 708, 801, 957, 976, 1154
BciVI GTATCC 1 cut(s) 108
BcnI CCSGG 2 cut(s) 775, 1103
BcoDI GTCTC 3 cut(s) 46, 643, 797
BfaI CTAG 8 cut(s) 413, 758, 992, 1163, 1383, 1521, 1557, 1930
BfmI CTRYAG 3 cut(s) 477, 565, 1921
BfoI RGCGCY 1 cut(s) 394
BfuAI ACCTGC 1 cut(s) 724
BfuI GTATCC 1 cut(s) 108
BglI GCCNNNNNGGC 1 cut(s) 980
Bme18I GGWCC 4 cut(s) 143, 545, 803, 1229
BmeT110I CYCGRG 3 cut(s) 47, 1467, 1529
BmgT120I GGNCC 9 cut(s) 143, 315, 545, 703, 704, 776, 803, 1229, 1465
BmiI GGNNCC 7 cut(s) 438, 546, 648, 704, 705, 714, 1625
BmsI GCATC 4 cut(s) 1253, 1362, 1398, 1572
BmtI GCTAGC 1 cut(s) 1386
BpmI CTGGAG 2 cut(s) 151, 1819
Bpu10I CCTNAGC 2 cut(s) 242, 321
Bpu14I TTCGAA 1 cut(s) 1894
BpuMI CCSGG 2 cut(s) 775, 1103
BsaHI GRCGYC 1 cut(s) 15
BsaI GGTCTC 1 cut(s) 797
BsaJI CCNNGG 4 cut(s) 680, 681, 706, 707
BsaWI WCCGGW 2 cut(s) 79, 1685
Bse118I RCCGGY 1 cut(s) 1685
Bse1I ACTGG 2 cut(s) 116, 204
Bse21I CCTNAGG 1 cut(s) 884
Bse3DI GCAATG 4 cut(s) 225, 969, 1026, 1910
BseBI CCWGG 8 cut(s) 169, 576, 682, 708, 801, 957, 976, 1154
BseDI CCNNGG 4 cut(s) 680, 681, 706, 707
BseGI GGATG 9 cut(s) 259, 907, 1111, 1320, 1377, 1423, 1432, 1495, 1915
BseMI GCAATG 4 cut(s) 225, 969, 1026, 1910
BseMII CTCAG 5 cut(s) 335, 531, 796, 924, 1355
BseNI ACTGG 2 cut(s) 116, 204
BseSI GKGCMC 1 cut(s) 707
BseXI GCAGC 7 cut(s) 136, 165, 463, 1253, 1366, 1398, 1407
BseYI CCCAGC 2 cut(s) 786, 1778
BsgI GTGCAG 3 cut(s) 657, 1520, 1745
Bsh1236I CGCG 1 cut(s) 1698
BshFI GGCC 8 cut(s) 34, 317, 705, 778, 1161, 1178, 1466, 1730
BshNI GGYRCC 1 cut(s) 646
BshTI ACCGGT 1 cut(s) 1685
BsiHKCI CYCGRG 3 cut(s) 47, 1467, 1529
BsiSI CCGG 5 cut(s) 80, 548, 774, 1103, 1686
BsmAI GTCTC 3 cut(s) 46, 643, 797
BsnI GGCC 8 cut(s) 34, 317, 705, 778, 1161, 1178, 1466, 1730
Bso31I GGTCTC 1 cut(s) 797
BsoBI CYCGRG 3 cut(s) 47, 1467, 1529
Bsp119I TTCGAA 1 cut(s) 1894
Bsp120I GGGCCC 1 cut(s) 703
Bsp1286I GDGCHC 1 cut(s) 707
Bsp1407I TGTACA 1 cut(s) 177
Bsp143I GATC 4 cut(s) 256, 571, 1513, 1881
Bsp68I TCGCGA 1 cut(s) 1698
BspACI CCGC 7 cut(s) 8, 11, 318, 434, 650, 979, 1360
BspANI GGCC 8 cut(s) 34, 317, 705, 778, 1161, 1178, 1466, 1730
BspCNI CTCAG 5 cut(s) 334, 532, 795, 925, 1356
BspFNI CGCG 1 cut(s) 1698
BspHI TCATGA 1 cut(s) 1134
BspLI GGNNCC 7 cut(s) 438, 546, 648, 704, 705, 714, 1625
BspMAI CTGCAG 1 cut(s) 481
BspMI ACCTGC 1 cut(s) 724
BspOI GCTAGC 1 cut(s) 1386
BspPI GGATC 2 cut(s) 566, 1521
BspT104I TTCGAA 1 cut(s) 1894
BspT107I GGYRCC 1 cut(s) 646
BspTNI GGTCTC 1 cut(s) 797
BsrBI CCGCTC 1 cut(s) 320
BsrDI GCAATG 4 cut(s) 225, 969, 1026, 1910
BsrFI RCCGGY 1 cut(s) 1685
BsrGI TGTACA 1 cut(s) 177
BsrI ACTGG 2 cut(s) 116, 204
BssAI RCCGGY 1 cut(s) 1685
BssECI CCNNGG 4 cut(s) 680, 681, 706, 707
BssMI GATC 4 cut(s) 256, 571, 1513, 1881
BssNI GRCGYC 1 cut(s) 15
BssSI CACGAG 1 cut(s) 36
Bst2BI CACGAG 1 cut(s) 36
Bst2UI CCWGG 8 cut(s) 169, 576, 682, 708, 801, 957, 976, 1154
Bst4CI ACNGT 5 cut(s) 135, 556, 869, 1448, 1771
Bst6I CTCTTC 3 cut(s) 1042, 1602, 1896
BstACI GRCGYC 1 cut(s) 15
BstAPI GCANNNNNTGC 2 cut(s) 190, 1025
BstAUI TGTACA 1 cut(s) 177
BstBI TTCGAA 1 cut(s) 1894
BstC8I GCNNGC 7 cut(s) 694, 877, 916, 981, 1377, 1384, 1728
BstDEI CTNAG 8 cut(s) 242, 321, 540, 782, 884, 933, 1364, 1655
BstF5I GGATG 9 cut(s) 259, 907, 1111, 1320, 1377, 1423, 1432, 1495, 1915
BstFNI CGCG 1 cut(s) 1698
BstH2I RGCGCY 1 cut(s) 394
BstHHI GCGC 1 cut(s) 393
BstKTI GATC 4 cut(s) 259, 574, 1516, 1884
BstMAI GTCTC 3 cut(s) 46, 643, 797
BstMBI GATC 4 cut(s) 256, 571, 1513, 1881
BstMWI GCNNNNNNNGC 8 cut(s) 17, 190, 702, 980, 1025, 1360, 1392, 1395
BstNI CCWGG 8 cut(s) 169, 576, 682, 708, 801, 957, 976, 1154
BstNSI RCATGY 2 cut(s) 184, 1672
BstSFI CTRYAG 3 cut(s) 477, 565, 1921
BstSLI GKGCMC 1 cut(s) 707
BstUI CGCG 1 cut(s) 1698
BstV1I GCAGC 7 cut(s) 136, 165, 463, 1253, 1366, 1398, 1407
BstX2I RGATCY 1 cut(s) 1513
BstXI CCANNNNNNTGG 1 cut(s) 688
BstYI RGATCY 1 cut(s) 1513
Bsu36I CCTNAGG 1 cut(s) 884
BsuI GTATCC 1 cut(s) 108
BsuRI GGCC 8 cut(s) 34, 317, 705, 778, 1161, 1178, 1466, 1730
BtgZI GCGATG 1 cut(s) 171
BtsCI GGATG 9 cut(s) 259, 907, 1111, 1320, 1377, 1423, 1432, 1495, 1915
BtsI GCAGTG 1 cut(s) 1125
BtsIMutI CAGTG 2 cut(s) 109, 1125
BtuMI TCGCGA 1 cut(s) 1698
BveI ACCTGC 1 cut(s) 724
Cac8I GCNNGC 7 cut(s) 694, 877, 916, 981, 1377, 1384, 1728
CciI TCATGA 1 cut(s) 1134
CfoI GCGC 1 cut(s) 393
Cfr10I RCCGGY 1 cut(s) 1685
Cfr13I GGNCC 9 cut(s) 143, 315, 545, 703, 704, 776, 803, 1229, 1465
CsiI ACCWGGT 1 cut(s) 1152
Csp6I GTAC 6 cut(s) 44, 178, 223, 301, 764, 1767
CspAI ACCGGT 1 cut(s) 1685
CviQI GTAC 6 cut(s) 44, 178, 223, 301, 764, 1767
DdeI CTNAG 8 cut(s) 242, 321, 540, 782, 884, 933, 1364, 1655
DpnI GATC 4 cut(s) 258, 573, 1515, 1883
DpnII GATC 4 cut(s) 256, 571, 1513, 1881
DraI TTTAAA 1 cut(s) 1813
DraIII CACNNNGTG 2 cut(s) 190, 1035
EaeI YGGCCR 1 cut(s) 1176
Eam1104I CTCTTC 3 cut(s) 1042, 1602, 1896
EarI CTCTTC 3 cut(s) 1042, 1602, 1896
EciI GGCGGA 1 cut(s) 26
Eco24I GRGCYC 1 cut(s) 707
Eco31I GGTCTC 1 cut(s) 797
Eco32I GATATC 1 cut(s) 505
Eco47I GGWCC 4 cut(s) 143, 545, 803, 1229
Eco47III AGCGCT 1 cut(s) 392
Eco57I CTGAAG 2 cut(s) 294, 1271
Eco81I CCTNAGG 1 cut(s) 884
Eco88I CYCGRG 3 cut(s) 47, 1467, 1529
EcoO109I RGGNCCY 2 cut(s) 703, 704
EcoRI GAATTC 1 cut(s) 928
EcoRII CCWGG 8 cut(s) 167, 574, 680, 706, 799, 955, 974, 1152
EcoRV GATATC 1 cut(s) 505
EcoT38I GRGCYC 1 cut(s) 707
FalI AAGNNNNNCTT 2 cut(s) 506, 538
FauI CCCGC 1 cut(s) 972
FauNDI CATATG 1 cut(s) 1552
FokI GGATG 9 cut(s) 246, 914, 1118, 1327, 1384, 1419, 1430, 1502, 1922
FriOI GRGCYC 1 cut(s) 707
FspBI CTAG 8 cut(s) 413, 758, 992, 1163, 1383, 1521, 1557, 1930
GlaI GCGC 1 cut(s) 392
GsaI CCCAGC 2 cut(s) 790, 1782
GsuI CTGGAG 2 cut(s) 151, 1819
HaeII RGCGCY 1 cut(s) 394
HaeIII GGCC 8 cut(s) 34, 317, 705, 778, 1161, 1178, 1466, 1730
HapII CCGG 5 cut(s) 80, 548, 774, 1103, 1686
HhaI GCGC 1 cut(s) 393
Hin1I GRCGYC 1 cut(s) 15
Hin6I GCGC 1 cut(s) 391
HinP1I GCGC 1 cut(s) 391
HindIII AAGCTT 1 cut(s) 1535
HpaII CCGG 5 cut(s) 80, 548, 774, 1103, 1686
HphI GGTGA 3 cut(s) 1493, 1700, 1874
Hpy188I TCNGA 7 cut(s) 354, 360, 934, 946, 1251, 1711, 1837
Hpy99I CGWCG 1 cut(s) 20
HpyAV CCTTC 4 cut(s) 612, 822, 1706, 1849
HpyCH4III ACNGT 5 cut(s) 135, 556, 869, 1448, 1771
HpyCH4IV ACGT 1 cut(s) 15
HpyF10VI GCNNNNNNNGC 8 cut(s) 17, 190, 702, 980, 1025, 1360, 1392, 1395
HpyF3I CTNAG 8 cut(s) 242, 321, 540, 782, 884, 933, 1364, 1655
HpySE526I ACGT 1 cut(s) 15
Hsp92I GRCGYC 1 cut(s) 15
HspAI GCGC 1 cut(s) 391
Kzo9I GATC 4 cut(s) 256, 571, 1513, 1881
LmnI GCTCC 4 cut(s) 442, 946, 1040, 1775
Lsp1109I GCAGC 7 cut(s) 136, 165, 463, 1253, 1366, 1398, 1407
LweI GCATC 4 cut(s) 1253, 1362, 1398, 1572
MabI ACCWGGT 1 cut(s) 1152
MaeI CTAG 8 cut(s) 413, 758, 992, 1163, 1383, 1521, 1557, 1930
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 8 cut(s) 107, 483, 600, 951, 1144, 1481, 1523, 1862
MalI GATC 4 cut(s) 258, 573, 1515, 1883
MbiI CCGCTC 1 cut(s) 320
MboI GATC 4 cut(s) 256, 571, 1513, 1881
MflI RGATCY 1 cut(s) 1513
MhlI GDGCHC 1 cut(s) 707
MlsI TGGCCA 1 cut(s) 1178
MluNI TGGCCA 1 cut(s) 1178
MlyI GAGTC 3 cut(s) 115, 411, 491
MmeI TCCRAC 1 cut(s) 1395
Mox20I TGGCCA 1 cut(s) 1178
MscI TGGCCA 1 cut(s) 1178
MseI TTAA 4 cut(s) 519, 1335, 1613, 1812
Msp20I TGGCCA 1 cut(s) 1178
MspA1I CMGCKG 1 cut(s) 786
MspI CCGG 5 cut(s) 80, 548, 774, 1103, 1686
MvaI CCWGG 8 cut(s) 169, 576, 682, 708, 801, 957, 976, 1154
MvnI CGCG 1 cut(s) 1698
MwoI GCNNNNNNNGC 8 cut(s) 17, 190, 702, 980, 1025, 1360, 1392, 1395
NciI CCSGG 2 cut(s) 775, 1103
NdeI CATATG 1 cut(s) 1552
NdeII GATC 4 cut(s) 256, 571, 1513, 1881
NheI GCTAGC 1 cut(s) 1382
NlaIV GGNNCC 7 cut(s) 438, 546, 648, 704, 705, 714, 1625
NmuCI GTSAC 5 cut(s) 107, 483, 1144, 1481, 1862
NruI TCGCGA 1 cut(s) 1698
NspI RCATGY 2 cut(s) 184, 1672
NspV TTCGAA 1 cut(s) 1894
PaeR7I CTCGAG 1 cut(s) 1529
PagI TCATGA 1 cut(s) 1134
PasI CCCWGGG 2 cut(s) 681, 707
PciI ACATGT 1 cut(s) 1668
PfeI GAWTC 7 cut(s) 307, 355, 404, 452, 740, 754, 905
PinAI ACCGGT 1 cut(s) 1685
PleI GAGTC 3 cut(s) 114, 411, 490
PpsI GAGTC 3 cut(s) 114, 411, 490
PscI ACATGT 1 cut(s) 1668
Psp6I CCWGG 8 cut(s) 167, 574, 680, 706, 799, 955, 974, 1152
PspFI CCCAGC 2 cut(s) 786, 1778
PspGI CCWGG 8 cut(s) 167, 574, 680, 706, 799, 955, 974, 1152
PspN4I GGNNCC 7 cut(s) 438, 546, 648, 704, 705, 714, 1625
PspOMI GGGCCC 1 cut(s) 703
PspPI GGNCC 9 cut(s) 143, 315, 545, 703, 704, 776, 803, 1229, 1465
PstI CTGCAG 1 cut(s) 481
PsuI RGATCY 1 cut(s) 1513
PvuII CAGCTG 1 cut(s) 786
RruI TCGCGA 1 cut(s) 1698
RsaI GTAC 6 cut(s) 45, 179, 224, 302, 765, 1768
RsaNI GTAC 6 cut(s) 44, 178, 223, 301, 764, 1767
SaqAI TTAA 4 cut(s) 519, 1335, 1613, 1812
Sau3AI GATC 4 cut(s) 256, 571, 1513, 1881
Sau96I GGNCC 9 cut(s) 143, 315, 545, 703, 704, 776, 803, 1229, 1465
SchI GAGTC 3 cut(s) 115, 411, 491
SduI GDGCHC 1 cut(s) 707
SexAI ACCWGGT 1 cut(s) 1152
SfaNI GCATC 4 cut(s) 1253, 1362, 1398, 1572
SfcI CTRYAG 3 cut(s) 477, 565, 1921
Sfr274I CTCGAG 1 cut(s) 1529
SfuI TTCGAA 1 cut(s) 1894
SinI GGWCC 4 cut(s) 143, 545, 803, 1229
SlaI CTCGAG 1 cut(s) 1529
SmlI CTYRAG 1 cut(s) 1529
SmoI CTYRAG 1 cut(s) 1529
SsiI CCGC 7 cut(s) 8, 11, 318, 434, 650, 979, 1360
SspMI CTAG 8 cut(s) 413, 758, 992, 1163, 1383, 1521, 1557, 1930
TaaI ACNGT 5 cut(s) 135, 556, 869, 1448, 1771
TaiI ACGT 1 cut(s) 18
TaqI TCGA 5 cut(s) 409, 1288, 1530, 1545, 1894
TatI WGTACW 4 cut(s) 177, 222, 763, 1766
TauI GCSGC 4 cut(s) 11, 320, 437, 1363
TfiI GAWTC 7 cut(s) 307, 355, 404, 452, 740, 754, 905
Tru1I TTAA 4 cut(s) 519, 1335, 1613, 1812
Tru9I TTAA 4 cut(s) 519, 1335, 1613, 1812
TscAI CASTG 2 cut(s) 116, 1125
TseFI GTSAC 5 cut(s) 107, 483, 1144, 1481, 1862
TseI GCWGC 7 cut(s) 124, 153, 476, 1241, 1379, 1386, 1395
Tsp45I GTSAC 5 cut(s) 107, 483, 1144, 1481, 1862
TspDTI ATGAA 9 cut(s) 681, 732, 836, 872, 918, 930, 1203, 1662, 1868
TspGWI ACGGA 3 cut(s) 39, 623, 676
TspRI CASTG 2 cut(s) 116, 1125
VpaK11BI GGWCC 4 cut(s) 143, 545, 803, 1229
XapI RAATTY 3 cut(s) 928, 1171, 1830
XbaI TCTAGA 1 cut(s) 757
XceI RCATGY 2 cut(s) 184, 1672
XcmI CCANNNNNNNNNTGG 1 cut(s) 982
XhoI CTCGAG 1 cut(s) 1529
XspI CTAG 8 cut(s) 413, 758, 992, 1163, 1383, 1521, 1557, 1930
ZraI GACGTC 1 cut(s) 16
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.