Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT1G63210 |
| fragaria_vesca | FvH4_1g02481 FvH4_1g02810 |
| rosa_chinensis | RchiOBHm_Chr2g0087471 RchiOBHm_Chr2g0087481 RchiOBHm_Chr2g0087901 RchiOBHm_Chr2g0087911 RchiOBHm_Chr2g0087921 RchiOBHm_Chr2g0087931 |
| rosa_laevigata | RLG00000015871 RLG00000015872 RLG00000015911 RLG00000015912 |
| rosa_multiflora | Rmu_sc0006064.1_g000017 Rmu_sc0008385.1_g000023 Rmu_sc0013931.1_g000008 Rmu_sc0014136.1_g000012 |
| rosa_roxburghii | Rroxscaffold_2G00153120 Rroxscaffold_2G00153130 |
| rosa_rugosa | Rorug01G0475800.1 Rorug01G0479400 Rorug01G0479700 |
| rosa_samantha | Rh2AG029200 Rh2AG029300 Rh2AG034100 Rh2AG034200 Rh2AG034500 Rh2BG029400 Rh2BG033300 Rh2BG033400 Rh2BG033500 Rh2CG029400 Rh2CG034000 Rh2CG034200 Rh2CG034500 Rh2DG029200 Rh2DG033700 Rh2DG033900 Rh2DG034200 |
| rosa_wichuraiana | Rw2G002320 Rw2G002680 Rw2G002690 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 3 cut(s) | 121, 462, 779 |
| AclWI | GGATC | 1 cut(s) | 387 |
| AcoI | YGGCCR | 1 cut(s) | 327 |
| AcsI | RAATTY | 1 cut(s) | 696 |
| AcuI | CTGAAG | 2 cut(s) | 647, 740 |
| AfaI | GTAC | 3 cut(s) | 634, 658, 717 |
| AflIII | ACRYGT | 1 cut(s) | 534 |
| AgsI | TTSAA | 2 cut(s) | 413, 775 |
| AjnI | CCWGG | 1 cut(s) | 18 |
| AluBI | AGCT | 3 cut(s) | 242, 403, 644 |
| AluI | AGCT | 3 cut(s) | 242, 403, 644 |
| Alw26I | GTCTC | 1 cut(s) | 551 |
| AlwI | GGATC | 1 cut(s) | 387 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 718 |
| Ama87I | CYCGRG | 1 cut(s) | 395 |
| AoxI | GGCC | 3 cut(s) | 25, 327, 594 |
| ApeKI | GCWGC | 5 cut(s) | 107, 118, 242, 258, 367 |
| ApoI | RAATTY | 1 cut(s) | 696 |
| AseI | ATTAAT | 1 cut(s) | 479 |
| AspLEI | GCGC | 1 cut(s) | 372 |
| AspS9I | GGNCC | 1 cut(s) | 95 |
| AsuHPI | GGTGA | 3 cut(s) | 152, 566, 740 |
| AsuII | TTCGAA | 2 cut(s) | 604, 760 |
| AvaI | CYCGRG | 1 cut(s) | 395 |
| AvaII | GGWCC | 1 cut(s) | 95 |
| BalI | TGGCCA | 1 cut(s) | 329 |
| BanII | GRGCYC | 1 cut(s) | 613 |
| BbvI | GCAGC | 5 cut(s) | 119, 130, 229, 270, 379 |
| BccI | CCATC | 1 cut(s) | 303 |
| BciT130I | CCWGG | 1 cut(s) | 20 |
| BciVI | GTATCC | 1 cut(s) | 302 |
| BcoDI | GTCTC | 1 cut(s) | 551 |
| BfaI | CTAG | 3 cut(s) | 99, 387, 521 |
| BfmI | CTRYAG | 1 cut(s) | 116 |
| BfuI | GTATCC | 1 cut(s) | 302 |
| BisI | GCNGC | 6 cut(s) | 108, 119, 243, 259, 368, 463 |
| BlsI | GCNGC | 6 cut(s) | 109, 120, 244, 260, 369, 464 |
| Bme1390I | CCNGG | 1 cut(s) | 20 |
| Bme18I | GGWCC | 1 cut(s) | 95 |
| BmeT110I | CYCGRG | 1 cut(s) | 395 |
| BmgT120I | GGNCC | 1 cut(s) | 95 |
| BmrFI | CCNGG | 1 cut(s) | 20 |
| BmsI | GCATC | 3 cut(s) | 119, 343, 438 |
| Bpu14I | TTCGAA | 2 cut(s) | 604, 760 |
| BpuEI | CTTGAG | 2 cut(s) | 458, 561 |
| Bse3DI | GCAATG | 1 cut(s) | 363 |
| BseBI | CCWGG | 1 cut(s) | 20 |
| BseGI | GGATG | 4 cut(s) | 286, 295, 358, 502 |
| BseMI | GCAATG | 1 cut(s) | 363 |
| BseMII | CTCAG | 1 cut(s) | 725 |
| BseXI | GCAGC | 5 cut(s) | 119, 130, 229, 270, 379 |
| BsgI | GTGCAG | 1 cut(s) | 611 |
| BshFI | GGCC | 3 cut(s) | 27, 329, 596 |
| BsiHKCI | CYCGRG | 1 cut(s) | 395 |
| BsmAI | GTCTC | 1 cut(s) | 551 |
| BsmI | GAATGC | 1 cut(s) | 781 |
| BsnI | GGCC | 3 cut(s) | 27, 329, 596 |
| BsoBI | CYCGRG | 1 cut(s) | 395 |
| Bsp119I | TTCGAA | 2 cut(s) | 604, 760 |
| Bsp1286I | GDGCHC | 1 cut(s) | 613 |
| Bsp1407I | TGTACA | 1 cut(s) | 656 |
| Bsp143I | GATC | 1 cut(s) | 379 |
| BspACI | CCGC | 3 cut(s) | 121, 462, 779 |
| BspANI | GGCC | 3 cut(s) | 27, 329, 596 |
| BspCNI | CTCAG | 1 cut(s) | 724 |
| BspMAI | CTGCAG | 1 cut(s) | 120 |
| BspPI | GGATC | 1 cut(s) | 387 |
| BspT104I | TTCGAA | 2 cut(s) | 604, 760 |
| BsrDI | GCAATG | 1 cut(s) | 363 |
| BsrGI | TGTACA | 1 cut(s) | 656 |
| BssMI | GATC | 1 cut(s) | 379 |
| Bst2UI | CCWGG | 1 cut(s) | 20 |
| Bst4CI | ACNGT | 2 cut(s) | 637, 682 |
| BstAUI | TGTACA | 1 cut(s) | 656 |
| BstBI | TTCGAA | 2 cut(s) | 604, 760 |
| BstC8I | GCNNGC | 2 cut(s) | 315, 594 |
| BstDEI | CTNAG | 1 cut(s) | 711 |
| BstF5I | GGATG | 4 cut(s) | 286, 295, 358, 502 |
| BstHHI | GCGC | 1 cut(s) | 372 |
| BstKTI | GATC | 1 cut(s) | 382 |
| BstMAI | GTCTC | 1 cut(s) | 551 |
| BstMBI | GATC | 1 cut(s) | 379 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 226, 258 |
| BstNI | CCWGG | 1 cut(s) | 20 |
| BstNSI | RCATGY | 1 cut(s) | 538 |
| BstSCI | CCNGG | 1 cut(s) | 18 |
| BstSFI | CTRYAG | 1 cut(s) | 116 |
| BstV1I | GCAGC | 5 cut(s) | 119, 130, 229, 270, 379 |
| BsuI | GTATCC | 1 cut(s) | 302 |
| BsuRI | GGCC | 3 cut(s) | 27, 329, 596 |
| BtsCI | GGATG | 4 cut(s) | 286, 295, 358, 502 |
| Cac8I | GCNNGC | 2 cut(s) | 315, 594 |
| CaiI | CAGNNNCTG | 1 cut(s) | 718 |
| CfoI | GCGC | 1 cut(s) | 372 |
| Cfr13I | GGNCC | 1 cut(s) | 95 |
| CsiI | ACCWGGT | 1 cut(s) | 18 |
| Csp6I | GTAC | 3 cut(s) | 633, 657, 716 |
| CviAII | CATG | 4 cut(s) | 53, 176, 233, 535 |
| CviQI | GTAC | 3 cut(s) | 633, 657, 716 |
| DdeI | CTNAG | 1 cut(s) | 711 |
| DpnI | GATC | 1 cut(s) | 381 |
| DpnII | GATC | 1 cut(s) | 379 |
| EaeI | YGGCCR | 1 cut(s) | 327 |
| Eco24I | GRGCYC | 1 cut(s) | 613 |
| Eco47I | GGWCC | 1 cut(s) | 95 |
| Eco57I | CTGAAG | 2 cut(s) | 647, 740 |
| Eco88I | CYCGRG | 1 cut(s) | 395 |
| EcoRII | CCWGG | 1 cut(s) | 18 |
| EcoT38I | GRGCYC | 1 cut(s) | 613 |
| FaeI | CATG | 4 cut(s) | 56, 179, 236, 538 |
| FatI | CATG | 4 cut(s) | 52, 175, 232, 534 |
| FauNDI | CATATG | 2 cut(s) | 418, 511 |
| Fnu4HI | GCNGC | 6 cut(s) | 108, 119, 243, 259, 368, 463 |
| FokI | GGATG | 4 cut(s) | 282, 293, 365, 509 |
| FriOI | GRGCYC | 1 cut(s) | 613 |
| Fsp4HI | GCNGC | 6 cut(s) | 108, 119, 243, 259, 368, 463 |
| FspBI | CTAG | 3 cut(s) | 99, 387, 521 |
| GlaI | GCGC | 1 cut(s) | 371 |
| GluI | GCNGC | 6 cut(s) | 108, 119, 243, 259, 368, 463 |
| HaeIII | GGCC | 3 cut(s) | 27, 329, 596 |
| HhaI | GCGC | 1 cut(s) | 372 |
| Hin1II | CATG | 4 cut(s) | 56, 179, 236, 538 |
| Hin6I | GCGC | 1 cut(s) | 370 |
| HinP1I | GCGC | 1 cut(s) | 370 |
| HindIII | AAGCTT | 1 cut(s) | 401 |
| HinfI | GANTC | 1 cut(s) | 302 |
| HphI | GGTGA | 3 cut(s) | 152, 566, 740 |
| Hpy166II | GTNNAC | 1 cut(s) | 659 |
| Hpy188I | TCNGA | 2 cut(s) | 666, 703 |
| Hpy188III | TCNNGA | 4 cut(s) | 87, 299, 397, 494 |
| Hpy8I | GTNNAC | 1 cut(s) | 659 |
| HpyAV | CCTTC | 5 cut(s) | 150, 183, 600, 715, 767 |
| HpyCH4III | ACNGT | 2 cut(s) | 637, 682 |
| HpyCH4IV | ACGT | 3 cut(s) | 170, 336, 408 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 226, 258 |
| HpyF3I | CTNAG | 1 cut(s) | 711 |
| HpySE526I | ACGT | 3 cut(s) | 170, 336, 408 |
| Hsp92II | CATG | 4 cut(s) | 56, 179, 236, 538 |
| HspAI | GCGC | 1 cut(s) | 370 |
| Kzo9I | GATC | 1 cut(s) | 379 |
| LmnI | GCTCC | 1 cut(s) | 641 |
| Lsp1109I | GCAGC | 5 cut(s) | 119, 130, 229, 270, 379 |
| LweI | GCATC | 3 cut(s) | 119, 343, 438 |
| MabI | ACCWGGT | 1 cut(s) | 18 |
| MaeI | CTAG | 3 cut(s) | 99, 387, 521 |
| MaeII | ACGT | 3 cut(s) | 170, 336, 408 |
| MaeIII | GTNAC | 2 cut(s) | 10, 389 |
| MalI | GATC | 1 cut(s) | 381 |
| MboI | GATC | 1 cut(s) | 379 |
| MboII | GAAGA | 3 cut(s) | 527, 539, 683 |
| MhlI | GDGCHC | 1 cut(s) | 613 |
| MlsI | TGGCCA | 1 cut(s) | 329 |
| MluCI | AATT | 6 cut(s) | 77, 147, 263, 476, 627, 696 |
| MluNI | TGGCCA | 1 cut(s) | 329 |
| MmeI | TCCRAC | 1 cut(s) | 258 |
| MnlI | CCTC | 2 cut(s) | 404, 684 |
| Mox20I | TGGCCA | 1 cut(s) | 329 |
| MscI | TGGCCA | 1 cut(s) | 329 |
| MseI | TTAA | 3 cut(s) | 267, 479, 684 |
| Msp20I | TGGCCA | 1 cut(s) | 329 |
| MspA1I | CMGCKG | 1 cut(s) | 121 |
| MspR9I | CCNGG | 1 cut(s) | 20 |
| Mva1269I | GAATGC | 1 cut(s) | 781 |
| MvaI | CCWGG | 1 cut(s) | 20 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 226, 258 |
| NdeI | CATATG | 2 cut(s) | 418, 511 |
| NdeII | GATC | 1 cut(s) | 379 |
| NlaIII | CATG | 4 cut(s) | 56, 179, 236, 538 |
| NspI | RCATGY | 1 cut(s) | 538 |
| NspV | TTCGAA | 2 cut(s) | 604, 760 |
| PaeR7I | CTCGAG | 1 cut(s) | 395 |
| PciI | ACATGT | 1 cut(s) | 534 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 766 |
| PctI | GAATGC | 1 cut(s) | 781 |
| PfeI | GAWTC | 1 cut(s) | 302 |
| PkrI | GCNGC | 6 cut(s) | 109, 120, 244, 260, 369, 464 |
| PscI | ACATGT | 1 cut(s) | 534 |
| PshBI | ATTAAT | 1 cut(s) | 479 |
| Psp6I | CCWGG | 1 cut(s) | 18 |
| PspGI | CCWGG | 1 cut(s) | 18 |
| PspPI | GGNCC | 1 cut(s) | 95 |
| PstI | CTGCAG | 1 cut(s) | 120 |
| PstNI | CAGNNNCTG | 1 cut(s) | 718 |
| RsaI | GTAC | 3 cut(s) | 634, 658, 717 |
| RsaNI | GTAC | 3 cut(s) | 633, 657, 716 |
| SaqAI | TTAA | 3 cut(s) | 267, 479, 684 |
| SatI | GCNGC | 6 cut(s) | 108, 119, 243, 259, 368, 463 |
| Sau3AI | GATC | 1 cut(s) | 379 |
| Sau96I | GGNCC | 1 cut(s) | 95 |
| ScrFI | CCNGG | 1 cut(s) | 20 |
| SduI | GDGCHC | 1 cut(s) | 613 |
| SexAI | ACCWGGT | 1 cut(s) | 18 |
| SfaNI | GCATC | 3 cut(s) | 119, 343, 438 |
| SfcI | CTRYAG | 1 cut(s) | 116 |
| Sfr274I | CTCGAG | 1 cut(s) | 395 |
| SfuI | TTCGAA | 2 cut(s) | 604, 760 |
| SinI | GGWCC | 1 cut(s) | 95 |
| SlaI | CTCGAG | 1 cut(s) | 395 |
| SmlI | CTYRAG | 3 cut(s) | 395, 437, 576 |
| SmoI | CTYRAG | 3 cut(s) | 395, 437, 576 |
| Sse9I | AATT | 6 cut(s) | 77, 147, 263, 476, 627, 696 |
| SsiI | CCGC | 3 cut(s) | 121, 462, 779 |
| SspMI | CTAG | 3 cut(s) | 99, 387, 521 |
| StyD4I | CCNGG | 1 cut(s) | 18 |
| TaaI | ACNGT | 2 cut(s) | 637, 682 |
| TaiI | ACGT | 3 cut(s) | 173, 339, 411 |
| TaqI | TCGA | 4 cut(s) | 154, 396, 604, 760 |
| TasI | AATT | 6 cut(s) | 77, 147, 263, 476, 627, 696 |
| TatI | WGTACW | 2 cut(s) | 632, 656 |
| TauI | GCSGC | 1 cut(s) | 465 |
| TfiI | GAWTC | 1 cut(s) | 302 |
| Tru1I | TTAA | 3 cut(s) | 267, 479, 684 |
| Tru9I | TTAA | 3 cut(s) | 267, 479, 684 |
| TseI | GCWGC | 5 cut(s) | 107, 118, 242, 258, 367 |
| TspDTI | ATGAA | 4 cut(s) | 69, 70, 528, 540 |
| VpaK11BI | GGWCC | 1 cut(s) | 95 |
| VspI | ATTAAT | 1 cut(s) | 479 |
| XapI | RAATTY | 1 cut(s) | 696 |
| XceI | RCATGY | 1 cut(s) | 538 |
| XhoI | CTCGAG | 1 cut(s) | 395 |
| XspI | CTAG | 3 cut(s) | 99, 387, 521 |