Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0002341

Physical Location & Seq

Genomic Coordinates Reverse (-)

2332041 .. 2334675

Gene Structure 2635 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G002680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1986 bp

ATGGCGATCGAAGAAAGTAACGCAGTTACGACATCTGTGTTGATCGAAGACATCGACATGGAAGAAGCGCACAAGGAACCATCCACAGTCGATCGGGATGACCAGATTTTGAAGCTTGATTTTTCAGAAAGAATGCAGATATACGATGATGACGAAAGCATACTGGAAGGAATCAGCATACATGATGAGAGTCAGTGGATACATAATCAACTTGAACCTTTGTTTGGTTCAATAAGCAGGGATGACATCTTCAGGTTTTTGCAGATGCACCATGTGCAAAAATTGGATGCAAGTATTATTCTGATTAATGAGCAGGGTTCAATTATTCCCTTCATTGCTATGTACCGAAAAGAGGACTGCCTTAGCTTACTGAAAGATCCTGAACAGCCTGAAGAAGAAAAATCTACGTTAAAGTGGCACAAGGTACTGTGGGCCATTCAGGAATTGCACAAAAAGTGGCTGCTGTTTCAGAATCAGAAAAGGGCATTGCAATTTCACTACAATAAGCGCTTTGAGGAAGAATCTCGACGAGGACTCTTACATGATGAGACTCCACAGCTTTTTGAATCAATTATGAAGTCACTCCGAGCCGCAGAGTCAGAGAGAGAGGTCGAGGATGTCAACAGCAAGTTTAACTTGCATTTCCCTGCAGGTGAGGGTCAGGCTGCTATTGATATCAGTAGTGATCCAGGTGTGAGGAATCACGAGCACAAAACCTGGCTTATATATGGATTGTCAAAAAGGCAATTGAATAGATTTGAGGATGCACAATGGTTGCTAGTCCAAAAGGCTGAAGAGGAGAATCTTGTACAAGTTACTATTAAGCTGCCCGAAGACCGTCTGAACAAGTTGATACGCGACTTAAGCAACTACAATCTTAGTAAATCTGCACTACTGTGGAACGAGCAGCGCAAGTTGATATTGCAAGACGCTCTTTCCAATTTCCTTCTGCCTTCAATGGAGAAAGAAGCAAGATCCTTGTTGGTCAGTAGAGCAAAAATCTGCTGGGAGAATCTCACCTGGACCGTACCATTCTTTGATAAACCTACTAGACTGCGTATGGAAAATGATGATAAACGTATTCTGCAGTTCGTGAATGATCACGAACCTGATCTTGCTATCATAGGAGCGACTAATATGTCTTGTGATATGCTGAAATTACAACTTCTGGGAATTGAATCATTACAGGTACCCGAGAAAATGATCCCCCTAAGGGTTGTATATGGGGATGAAACTTTGGCTTGCCTGTATGAAAATTCTCAGATTTCGGCTGATCAGCTACCTGGACAATCAGGCATGGTCAGGCGGGCTGTGGCTCTTGGGCGTTATCTTCAAAATCCACTGGCAATGGTTGCCACACTTTGTGGACCGGGACGAGAGATCTTATCTTGGAAACCACTCACTTCTCCTTTCGATAACTTTCTCACCCCAGATGAGAAGTACGCGATGATTGAACAGGTCATGGTAGATGTTACAAACCAGGTTGGCCTTGACATAACTTTGGCTACAAGCCATGAATGGTTATTTGCACCTTTGCAATTCATTTCTGGACTTGGACCTAGAAAGGCAGCATCTCTGCAGCGGTCATTGGTAAGAAGTGGTGAAATACTTGCTCGAAGGGAGTTGGCTACGTTGCATGGGCTTGGTAGAAGGTTGTATCTAAATGCAGTTGGTTTCTTGCGTATTCAGCAACATGGGTTAGCTGCTAGCGGCACCAGCAGCCAATTTAATGCTCTGTTGGATGATACAAGAATCCATCCAGAATCCTATTTGCTTGCACAAGAAATGGCCAAAGACGTTTATGATGATAAGGATGCAATGGAGCTGCCGCGCATTAGGGATCAACCTAGTTACCTCGAGAAGCTTGACGTTGAAGCATATGCTAAAAGCAAAAAACTTGAGAATAAGATAAAAACATTGTGCGGCATAAGGAGAGAATTAATACAGGGGTTTCAGGATGAGCTTAAAACAGGAAGAACTAGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000018 GO:0000785 GO:0000988 GO:0000990 GO:0000991 GO:0002637 GO:0002682 GO:0002694 GO:0002697 GO:0002700 GO:0002703 GO:0002706 GO:0002712 GO:0002819 GO:0002822 GO:0002889 GO:0003006 GO:0003674 GO:0003682 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006325 GO:0006338 GO:0006342 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009506 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0010793 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030054 GO:0031056 GO:0031057 GO:0031060 GO:0031061 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031491 GO:0031974 GO:0031981 GO:0032239 GO:0032268 GO:0032269 GO:0032386 GO:0032501 GO:0032502 GO:0032774 GO:0032784 GO:0032786 GO:0032879 GO:0032880 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0033157 GO:0034243 GO:0034641 GO:0034645 GO:0034654 GO:0034728 GO:0035327 GO:0040029 GO:0042393 GO:0042789 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0043954 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045191 GO:0045595 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0046822 GO:0046825 GO:0046831 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050684 GO:0050776 GO:0050789 GO:0050793 GO:0050794 GO:0050864 GO:0050865 GO:0051049 GO:0051052 GO:0051128 GO:0051129 GO:0051147 GO:0051171 GO:0051172 GO:0051173 GO:0051223 GO:0051239 GO:0051246 GO:0051248 GO:0051249 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0055044 GO:0060255 GO:0060341 GO:0061085 GO:0061086 GO:0061458 GO:0065007 GO:0070013 GO:0070201 GO:0070827 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090087 GO:0090304 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902275 GO:1902679 GO:1902680 GO:1903311 GO:1903506 GO:1903507 GO:1903508 GO:1903827 GO:1905268 GO:2000026 GO:2000112 GO:2000113 GO:2000197 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DLD HHH_7 HTH_44 SH2_2 SPT6_acidic YqgF

Protein Analysis

661

Amino Acids

76.12

Weight (kDa)

5.41

Isoelectric Point (pI)

53.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
YqgF	PF14639	354 - 455	7.4e-11	Holliday-junction resolvase-like of SPT6
HHH_7	PF14635	469 - 562	6.3e-17	Helix-hairpin-helix motif
HHH_9	PF17674	580 - 648	1.8e-06	HHH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002341)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63210
fragaria_vesca	FvH4_1g02481 FvH4_1g02810
rosa_chinensis	RchiOBHm_Chr2g0087471 RchiOBHm_Chr2g0087481 RchiOBHm_Chr2g0087901 RchiOBHm_Chr2g0087911 RchiOBHm_Chr2g0087921 RchiOBHm_Chr2g0087931
rosa_laevigata	RLG00000015871 RLG00000015872 RLG00000015911 RLG00000015912
rosa_multiflora	Rmu_sc0006064.1_g000017 Rmu_sc0008385.1_g000023 Rmu_sc0013931.1_g000008 Rmu_sc0014136.1_g000012
rosa_roxburghii	Rroxscaffold_2G00153120 Rroxscaffold_2G00153130
rosa_rugosa	Rorug01G0475800.1 Rorug01G0479400 Rorug01G0479700
rosa_samantha	Rh2AG029200 Rh2AG029300 Rh2AG034100 Rh2AG034200 Rh2AG034500 Rh2BG029400 Rh2BG033300 Rh2BG033400 Rh2BG033500 Rh2CG029400 Rh2CG034000 Rh2CG034200 Rh2CG034500 Rh2DG029200 Rh2DG033700 Rh2DG033900 Rh2DG034200
rosa_wichuraiana	Rw2G002320 Rw2G002680 Rw2G002690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	641
AasI	GACNNNNNNGTC	1 cut(s)	1138
Acc36I	ACCTGC	1 cut(s)	641
Acc65I	GGTACC	1 cut(s)	1189
AccB1I	GGYRCC	2 cut(s)	1189, 1712
AccII	CGCG	3 cut(s)	858, 1445, 1831
AciI	CCGC	6 cut(s)	591, 1306, 1582, 1710, 1829, 1923
AclWI	GGATC	5 cut(s)	371, 680, 969, 1198, 1848
AcoI	YGGCCR	1 cut(s)	1788
AcsI	RAATTY	1 cut(s)	1255
AcuI	CTGAAG	3 cut(s)	235, 411, 813
AdeI	CACNNNGTG	2 cut(s)	274, 1364
AfaI	GTAC	6 cut(s)	344, 426, 810, 1029, 1191, 1442
AfeI	AGCGCT	1 cut(s)	509
AfiI	CCNNNNNNNGG	3 cut(s)	224, 352, 1213
AflII	CTTAAG	1 cut(s)	862
AjnI	CCWGG	5 cut(s)	688, 716, 1019, 1282, 1479
AjuI	GAANNNNNNNTTGG	2 cut(s)	207, 239
AleI	CACNNNNGTG	1 cut(s)	895
AluBI	AGCT	9 cut(s)	115, 366, 559, 826, 1279, 1703, 1825, 1864, 1963
AluI	AGCT	9 cut(s)	115, 366, 559, 826, 1279, 1703, 1825, 1864, 1963
Alw21I	GWGCWC	1 cut(s)	711
Alw26I	GTCTC	1 cut(s)	542
AlwI	GGATC	5 cut(s)	371, 680, 969, 1198, 1848
Ama87I	CYCGRG	2 cut(s)	1193, 1856
Aor51HI	AGCGCT	1 cut(s)	509
AoxI	GGCC	3 cut(s)	432, 1486, 1788
ApeKI	GCWGC	9 cut(s)	460, 665, 826, 907, 1568, 1579, 1703, 1719, 1825
ApoI	RAATTY	1 cut(s)	1255
AseI	ATTAAT	2 cut(s)	306, 1940
Asp718I	GGTACC	1 cut(s)	1189
AspLEI	GCGC	4 cut(s)	70, 510, 912, 1833
AspS9I	GGNCC	4 cut(s)	432, 1023, 1367, 1556
AsuC2I	CCSGG	1 cut(s)	1371
AsuHPI	GGTGA	4 cut(s)	665, 1009, 1417, 1613
AsuNHI	GCTAGC	1 cut(s)	1706
AvaI	CYCGRG	2 cut(s)	1193, 1856
AvaII	GGWCC	3 cut(s)	1023, 1367, 1556
AxyI	CCTNAGG	1 cut(s)	1211
BalI	TGGCCA	1 cut(s)	1790
BanI	GGYRCC	2 cut(s)	1189, 1712
BauI	CACGAG	1 cut(s)	704
BbsI	GAAGAC	2 cut(s)	54, 840
Bbv12I	GWGCWC	1 cut(s)	711
BbvI	GCAGC	9 cut(s)	447, 652, 813, 919, 1580, 1591, 1690, 1731, 1812
BccI	CCATC	2 cut(s)	88, 1764
BciT130I	CCWGG	5 cut(s)	690, 718, 1021, 1284, 1481
BciVI	GTATCC	1 cut(s)	192
BclI	TGATCA	2 cut(s)	1099, 1273
BcnI	CCSGG	1 cut(s)	1371
BcoDI	GTCTC	1 cut(s)	542
BfaI	CTAG	6 cut(s)	779, 1050, 1560, 1707, 1848, 1980
BfmI	CTRYAG	3 cut(s)	648, 1085, 1577
BfoI	RGCGCY	1 cut(s)	511
BfrI	CTTAAG	1 cut(s)	862
BfuAI	ACCTGC	1 cut(s)	641
BfuI	GTATCC	1 cut(s)	192
BglII	AGATCT	1 cut(s)	1380
Bme1390I	CCNGG	6 cut(s)	690, 718, 1021, 1284, 1371, 1481
Bme18I	GGWCC	3 cut(s)	1023, 1367, 1556
BmeT110I	CYCGRG	2 cut(s)	1193, 1856
BmgT120I	GGNCC	4 cut(s)	432, 1023, 1367, 1556
BmiI	GGNNCC	3 cut(s)	78, 1191, 1714
BmrFI	CCNGG	6 cut(s)	690, 718, 1021, 1284, 1371, 1481
BmsI	GCATC	5 cut(s)	255, 277, 754, 1580, 1804
BmtI	GCTAGC	1 cut(s)	1710
BpiI	GAAGAC	2 cut(s)	54, 840
Bpu10I	CCTNAGC	1 cut(s)	362
BpuEI	CTTGAG	1 cut(s)	1919
BpuMI	CCSGG	1 cut(s)	1371
Bsc4I	CCNNNNNNNGG	3 cut(s)	224, 352, 1213
Bse1I	ACTGG	2 cut(s)	168, 1347
Bse21I	CCTNAGG	1 cut(s)	1211
Bse3DI	GCAATG	4 cut(s)	333, 485, 1353, 1824
BseBI	CCWGG	5 cut(s)	690, 718, 1021, 1284, 1481
BseLI	CCNNNNNNNGG	3 cut(s)	224, 352, 1213
BseMI	GCAATG	4 cut(s)	333, 485, 1353, 1824
BseMII	CTCAG	1 cut(s)	1274
BseNI	ACTGG	2 cut(s)	168, 1347
BseRI	GAGGAG	1 cut(s)	812
BseXI	GCAGC	9 cut(s)	447, 652, 813, 919, 1580, 1591, 1690, 1731, 1812
BseYI	CCCAGC	1 cut(s)	1005
BsgI	GTGCAG	1 cut(s)	873
Bsh1236I	CGCG	3 cut(s)	858, 1445, 1831
Bsh1285I	CGRYCG	2 cut(s)	9, 94
BshFI	GGCC	3 cut(s)	434, 1488, 1790
BshNI	GGYRCC	2 cut(s)	1189, 1712
BsiEI	CGRYCG	2 cut(s)	9, 94
BsiHKAI	GWGCWC	1 cut(s)	711
BsiHKCI	CYCGRG	2 cut(s)	1193, 1856
BsiSI	CCGG	1 cut(s)	1370
BslFI	GGGAC	1 cut(s)	1386
BslI	CCNNNNNNNGG	3 cut(s)	224, 352, 1213
BsmAI	GTCTC	1 cut(s)	542
BsmFI	GGGAC	1 cut(s)	1386
BsmI	GAATGC	1 cut(s)	138
BsnI	GGCC	3 cut(s)	434, 1488, 1790
BsoBI	CYCGRG	2 cut(s)	1193, 1856
Bsp1286I	GDGCHC	1 cut(s)	711
Bsp1407I	TGTACA	1 cut(s)	808
BspACI	CCGC	6 cut(s)	591, 1306, 1582, 1710, 1829, 1923
BspANI	GGCC	3 cut(s)	434, 1488, 1790
BspCNI	CTCAG	1 cut(s)	1273
BspFNI	CGCG	3 cut(s)	858, 1445, 1831
BspLI	GGNNCC	3 cut(s)	78, 1191, 1714
BspMAI	CTGCAG	3 cut(s)	652, 1089, 1581
BspMI	ACCTGC	1 cut(s)	641
BspOI	GCTAGC	1 cut(s)	1710
BspPI	GGATC	5 cut(s)	371, 680, 969, 1198, 1848
BspT107I	GGYRCC	2 cut(s)	1189, 1712
BspTI	CTTAAG	1 cut(s)	862
BsrDI	GCAATG	4 cut(s)	333, 485, 1353, 1824
BsrGI	TGTACA	1 cut(s)	808
BsrI	ACTGG	2 cut(s)	168, 1347
BssSI	CACGAG	1 cut(s)	704
Bst2BI	CACGAG	1 cut(s)	704
Bst2UI	CCWGG	5 cut(s)	690, 718, 1021, 1284, 1481
Bst4CI	ACNGT	5 cut(s)	88, 429, 839, 897, 1027
Bst6I	CTCTTC	1 cut(s)	789
BstAFI	CTTAAG	1 cut(s)	862
BstAPI	GCANNNNNTGC	2 cut(s)	274, 1352
BstAUI	TGTACA	1 cut(s)	808
BstC8I	GCNNGC	4 cut(s)	1243, 1308, 1708, 1776
BstDEI	CTNAG	4 cut(s)	362, 878, 1211, 1260
BstFNI	CGCG	3 cut(s)	858, 1445, 1831
BstH2I	RGCGCY	1 cut(s)	511
BstHHI	GCGC	4 cut(s)	70, 510, 912, 1833
BstMAI	GTCTC	1 cut(s)	542
BstMCI	CGRYCG	2 cut(s)	9, 94
BstMWI	GCNNNNNNNGC	6 cut(s)	274, 864, 1352, 1687, 1716, 1719
BstNI	CCWGG	5 cut(s)	690, 718, 1021, 1284, 1481
BstSCI	CCNGG	6 cut(s)	688, 716, 1019, 1282, 1369, 1479
BstSFI	CTRYAG	3 cut(s)	648, 1085, 1577
BstUI	CGCG	3 cut(s)	858, 1445, 1831
BstV1I	GCAGC	9 cut(s)	447, 652, 813, 919, 1580, 1591, 1690, 1731, 1812
BstV2I	GAAGAC	2 cut(s)	54, 840
BstX2I	RGATCY	3 cut(s)	376, 974, 1380
BstYI	RGATCY	3 cut(s)	376, 974, 1380
Bsu36I	CCTNAGG	1 cut(s)	1211
BsuI	GTATCC	1 cut(s)	192
BsuRI	GGCC	3 cut(s)	434, 1488, 1790
BtgZI	GCGATG	1 cut(s)	1460
BtsIMutI	CAGTG	2 cut(s)	200, 1340
BveI	ACCTGC	1 cut(s)	641
Cac8I	GCNNGC	4 cut(s)	1243, 1308, 1708, 1776
CfoI	GCGC	4 cut(s)	70, 510, 912, 1833
Cfr13I	GGNCC	4 cut(s)	432, 1023, 1367, 1556
CseI	GACGC	1 cut(s)	938
CsiI	ACCWGGT	1 cut(s)	1479
Csp6I	GTAC	6 cut(s)	343, 425, 809, 1028, 1190, 1441
CviAII	CATG	9 cut(s)	58, 182, 272, 542, 1297, 1462, 1514, 1637, 1694
CviQI	GTAC	6 cut(s)	343, 425, 809, 1028, 1190, 1441
DdeI	CTNAG	4 cut(s)	362, 878, 1211, 1260
DraIII	CACNNNGTG	2 cut(s)	274, 1364
DrdI	GACNNNNNNGTC	1 cut(s)	1138
DseDI	GACNNNNNNGTC	1 cut(s)	1138
EaeI	YGGCCR	1 cut(s)	1788
Eam1104I	CTCTTC	1 cut(s)	789
EarI	CTCTTC	1 cut(s)	789
Eco32I	GATATC	1 cut(s)	676
Eco47I	GGWCC	3 cut(s)	1023, 1367, 1556
Eco47III	AGCGCT	1 cut(s)	509
Eco57I	CTGAAG	3 cut(s)	235, 411, 813
Eco81I	CCTNAGG	1 cut(s)	1211
Eco88I	CYCGRG	2 cut(s)	1193, 1856
EcoRII	CCWGG	5 cut(s)	688, 716, 1019, 1282, 1479
EcoRV	GATATC	1 cut(s)	676
FaeI	CATG	9 cut(s)	61, 185, 275, 545, 1300, 1465, 1517, 1640, 1697
FalI	AAGNNNNNCTT	4 cut(s)	620, 652, 918, 950
FaqI	GGGAC	1 cut(s)	1386
FatI	CATG	9 cut(s)	57, 181, 271, 541, 1296, 1461, 1513, 1636, 1693
FauI	CCCGC	1 cut(s)	1299
FauNDI	CATATG	1 cut(s)	1879
FbaI	TGATCA	2 cut(s)	1099, 1273
FspBI	CTAG	6 cut(s)	779, 1050, 1560, 1707, 1848, 1980
GlaI	GCGC	4 cut(s)	69, 509, 911, 1832
GsaI	CCCAGC	1 cut(s)	1009
HaeII	RGCGCY	1 cut(s)	511
HaeIII	GGCC	3 cut(s)	434, 1488, 1790
HapII	CCGG	1 cut(s)	1370
HgaI	GACGC	1 cut(s)	938
HhaI	GCGC	4 cut(s)	70, 510, 912, 1833
Hin1II	CATG	9 cut(s)	61, 185, 275, 545, 1300, 1465, 1517, 1640, 1697
Hin6I	GCGC	4 cut(s)	68, 508, 910, 1831
HinP1I	GCGC	4 cut(s)	68, 508, 910, 1831
HincII	GTYRAC	1 cut(s)	622
HindII	GTYRAC	1 cut(s)	622
HindIII	AAGCTT	2 cut(s)	113, 1862
HpaII	CCGG	1 cut(s)	1370
HphI	GGTGA	4 cut(s)	665, 1009, 1417, 1613
Hpy166II	GTNNAC	2 cut(s)	622, 1367
Hpy188I	TCNGA	8 cut(s)	127, 303, 471, 477, 587, 601, 843, 1263
Hpy8I	GTNNAC	2 cut(s)	622, 1367
Hpy99I	CGWCG	1 cut(s)	531
HpyAV	CCTTC	6 cut(s)	161, 340, 956, 963, 1611, 1644
HpyCH4III	ACNGT	5 cut(s)	88, 429, 839, 897, 1027
HpyCH4IV	ACGT	5 cut(s)	407, 1078, 1631, 1797, 1869
HpyF10VI	GCNNNNNNNGC	6 cut(s)	274, 864, 1352, 1687, 1716, 1719
HpyF3I	CTNAG	4 cut(s)	362, 878, 1211, 1260
HpySE526I	ACGT	5 cut(s)	407, 1078, 1631, 1797, 1869
Hsp92II	CATG	9 cut(s)	61, 185, 275, 545, 1300, 1465, 1517, 1640, 1697
HspAI	GCGC	4 cut(s)	68, 508, 910, 1831
KpnI	GGTACC	1 cut(s)	1193
Ksp22I	TGATCA	2 cut(s)	1099, 1273
LmnI	GCTCC	2 cut(s)	1127, 1822
Lsp1109I	GCAGC	9 cut(s)	447, 652, 813, 919, 1580, 1591, 1690, 1731, 1812
LweI	GCATC	5 cut(s)	255, 277, 754, 1580, 1804
MabI	ACCWGGT	1 cut(s)	1479
MaeI	CTAG	6 cut(s)	779, 1050, 1560, 1707, 1848, 1980
MaeII	ACGT	5 cut(s)	407, 1078, 1631, 1797, 1869
MaeIII	GTNAC	6 cut(s)	17, 25, 579, 814, 1471, 1850
MfeI	CAATTG	1 cut(s)	746
MflI	RGATCY	3 cut(s)	376, 974, 1380
MhlI	GDGCHC	1 cut(s)	711
MlsI	TGGCCA	1 cut(s)	1790
MluNI	TGGCCA	1 cut(s)	1790
MlyI	GAGTC	4 cut(s)	199, 528, 544, 605
MmeI	TCCRAC	1 cut(s)	1719
Mox20I	TGGCCA	1 cut(s)	1790
MscI	TGGCCA	1 cut(s)	1790
MseI	TTAA	8 cut(s)	306, 410, 633, 822, 863, 1728, 1940, 1965
MslI	CAYNNNNRTG	3 cut(s)	56, 338, 895
Msp20I	TGGCCA	1 cut(s)	1790
MspA1I	CMGCKG	1 cut(s)	1582
MspCI	CTTAAG	1 cut(s)	862
MspI	CCGG	1 cut(s)	1370
MspR9I	CCNGG	6 cut(s)	690, 718, 1021, 1284, 1371, 1481
MunI	CAATTG	1 cut(s)	746
Mva1269I	GAATGC	1 cut(s)	138
MvaI	CCWGG	5 cut(s)	690, 718, 1021, 1284, 1481
MvnI	CGCG	3 cut(s)	858, 1445, 1831
MwoI	GCNNNNNNNGC	6 cut(s)	274, 864, 1352, 1687, 1716, 1719
NciI	CCSGG	1 cut(s)	1371
NdeI	CATATG	1 cut(s)	1879
NheI	GCTAGC	1 cut(s)	1706
NlaIII	CATG	9 cut(s)	61, 185, 275, 545, 1300, 1465, 1517, 1640, 1697
NlaIV	GGNNCC	3 cut(s)	78, 1191, 1714
NmuCI	GTSAC	1 cut(s)	579
OliI	CACNNNNGTG	1 cut(s)	895
PaeR7I	CTCGAG	1 cut(s)	1856
PaqCI	CACCTGC	1 cut(s)	641
PcsI	WCGNNNNNNNCGW	2 cut(s)	51, 150
PctI	GAATGC	1 cut(s)	138
Ple19I	CGATCG	2 cut(s)	9, 94
PleI	GAGTC	4 cut(s)	198, 528, 544, 604
PpsI	GAGTC	4 cut(s)	198, 528, 544, 604
PshBI	ATTAAT	2 cut(s)	306, 1940
Psp6I	CCWGG	5 cut(s)	688, 716, 1019, 1282, 1479
PspFI	CCCAGC	1 cut(s)	1005
PspGI	CCWGG	5 cut(s)	688, 716, 1019, 1282, 1479
PspN4I	GGNNCC	3 cut(s)	78, 1191, 1714
PspPI	GGNCC	4 cut(s)	432, 1023, 1367, 1556
PstI	CTGCAG	3 cut(s)	652, 1089, 1581
PsuI	RGATCY	3 cut(s)	376, 974, 1380
PvuI	CGATCG	2 cut(s)	9, 94
RsaI	GTAC	6 cut(s)	344, 426, 810, 1029, 1191, 1442
RsaNI	GTAC	6 cut(s)	343, 425, 809, 1028, 1190, 1441
RseI	CAYNNNNRTG	3 cut(s)	56, 338, 895
SaqAI	TTAA	8 cut(s)	306, 410, 633, 822, 863, 1728, 1940, 1965
Sau96I	GGNCC	4 cut(s)	432, 1023, 1367, 1556
SbfI	CCTGCAGG	1 cut(s)	652
SchI	GAGTC	4 cut(s)	199, 528, 544, 605
ScrFI	CCNGG	6 cut(s)	690, 718, 1021, 1284, 1371, 1481
SdaI	CCTGCAGG	1 cut(s)	652
SduI	GDGCHC	1 cut(s)	711
SexAI	ACCWGGT	1 cut(s)	1479
SfaNI	GCATC	5 cut(s)	255, 277, 754, 1580, 1804
SfcI	CTRYAG	3 cut(s)	648, 1085, 1577
Sfr274I	CTCGAG	1 cut(s)	1856
SinI	GGWCC	3 cut(s)	1023, 1367, 1556
SlaI	CTCGAG	1 cut(s)	1856
SmiMI	CAYNNNNRTG	3 cut(s)	56, 338, 895
SmlI	CTYRAG	3 cut(s)	862, 1856, 1898
SmoI	CTYRAG	3 cut(s)	862, 1856, 1898
Sse8387I	CCTGCAGG	1 cut(s)	652
SsiI	CCGC	6 cut(s)	591, 1306, 1582, 1710, 1829, 1923
SspMI	CTAG	6 cut(s)	779, 1050, 1560, 1707, 1848, 1980
StyD4I	CCNGG	6 cut(s)	688, 716, 1019, 1282, 1369, 1479
TaaI	ACNGT	5 cut(s)	88, 429, 839, 897, 1027
TaiI	ACGT	5 cut(s)	410, 1081, 1634, 1800, 1872
TaqI	TCGA	9 cut(s)	9, 45, 54, 90, 526, 612, 1413, 1615, 1857
TatI	WGTACW	1 cut(s)	808
TauI	GCSGC	4 cut(s)	593, 1713, 1831, 1926
Tru1I	TTAA	8 cut(s)	306, 410, 633, 822, 863, 1728, 1940, 1965
Tru9I	TTAA	8 cut(s)	306, 410, 633, 822, 863, 1728, 1940, 1965
TscAI	CASTG	2 cut(s)	200, 1347
TseFI	GTSAC	1 cut(s)	579
TseI	GCWGC	9 cut(s)	460, 665, 826, 907, 1568, 1579, 1703, 1719, 1825
Tsp45I	GTSAC	1 cut(s)	579
TspDTI	ATGAA	6 cut(s)	322, 590, 1245, 1266, 1530, 1531
TspRI	CASTG	2 cut(s)	200, 1347
Vha464I	CTTAAG	1 cut(s)	862
VpaK11BI	GGWCC	3 cut(s)	1023, 1367, 1556
VspI	ATTAAT	2 cut(s)	306, 1940
XapI	RAATTY	1 cut(s)	1255
XhoI	CTCGAG	1 cut(s)	1856
XspI	CTAG	6 cut(s)	779, 1050, 1560, 1707, 1848, 1980

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.