RLG00000015872

Transcription elongation factor that enhances transcription elongation by RNA polymerase II (RNAPII)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr4
OG0002341
Physical Location & Seq
Forward (+)
2009550 .. 2010294
745 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015872

Sequence Viewer

Length: 720 bp
ATGGTAGATGTTACAAACCAAGTAGGCCTAGACATAAATTTGGCCATAAGCCATGAATGGTTATTTGCACCATTGCAATTCATTTCCGGACTTGGACCTAGAAAGGCAGCACATTTGCAGCAGTCGTTGGTAAGATCTGGATGCACAATCTCTGATCGGAGGGAGTTTGTTACATTGCACCAGCTTGGTGAAAAGGTGTATGATAATCCAGCCAGTTTCTTGCGTGTTCGGCTGAGCAGCAGGAGTGGCAAGCAATTTCGAGATCTGTTGGATGATACAAGAATACATCCAGAATCCTATATTCTTGCTGAGGAATTGGTGAAAGACAGTGCATTTGGTACCGACCTGGTTACCTTGAAAGGCTTGACATTGAAGCATATGCTTAGAAGCAAGCAACTTGAGGATAAGATGCAAACTTTGTATGATATAAGGAAAGAATTAATACAGGGTTTTCGGGACCCTAGGAAAGAGTATGAAGAACCAAGTGTTGATGAACTTTTTCATCTGCTCACTGGTTTAACTGATCATGCCATTTGTGAAGGAAGAACTGTGCAGGCAACGGTGTACAGCGTGTGTCCTATTAGGGCATCTTGTAATACTGAACTTGGATTGAGTGGTGCGCTTCGGAAAGCAGACTTTTCAGATCATGGAAGGCGTACTAAAGACTTGGGTAAAAAGCTGAAGAAGGGTGACATTATCACTTGCAGATCAAAACTGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000018 GO:0000785 GO:0000988 GO:0000990 GO:0000991 GO:0002637 GO:0002682 GO:0002694 GO:0002697 GO:0002700 GO:0002703 GO:0002706 GO:0002712 GO:0002819 GO:0002822 GO:0002889 GO:0003006 GO:0003674 GO:0003682 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006325 GO:0006338 GO:0006342 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009506 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0010793 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030054 GO:0031056 GO:0031057 GO:0031060 GO:0031061 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031491 GO:0031974 GO:0031981 GO:0032239 GO:0032268 GO:0032269 GO:0032386 GO:0032501 GO:0032502 GO:0032774 GO:0032784 GO:0032786 GO:0032879 GO:0032880 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0033157 GO:0034243 GO:0034641 GO:0034645 GO:0034654 GO:0034728 GO:0035327 GO:0040029 GO:0042393 GO:0042789 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0043954 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045191 GO:0045595 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0046822 GO:0046825 GO:0046831 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050684 GO:0050776 GO:0050789 GO:0050793 GO:0050794 GO:0050864 GO:0050865 GO:0051049 GO:0051052 GO:0051128 GO:0051129 GO:0051147 GO:0051171 GO:0051172 GO:0051173 GO:0051223 GO:0051239 GO:0051246 GO:0051248 GO:0051249 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0055044 GO:0060255 GO:0060341 GO:0061085 GO:0061086 GO:0061458 GO:0065007 GO:0070013 GO:0070201 GO:0070827 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090087 GO:0090304 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902275 GO:1902679 GO:1902680 GO:1903311 GO:1903506 GO:1903507 GO:1903508 GO:1903827 GO:1905268 GO:2000026 GO:2000112 GO:2000113 GO:2000197 GO:2001141 GO:2001251
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
DLD HHH_7 HTH_44 SH2_2 SPT6_acidic YqgF

Protein Analysis

240

Amino Acids

27.02

Weight (kDa)

8.76

Isoelectric Point (pI)

36.6

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HHH_7 PF14635 1 - 76 8.7e-17 Helix-hairpin-helix motif
HHH_9 PF17674 89 - 155 4.5e-09 HHH domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 338
AccB1I GGYRCC 1 cut(s) 338
AccIII TCCGGA 1 cut(s) 86
AcoI YGGCCR 1 cut(s) 42
AcsI RAATTY 1 cut(s) 37
AcuI CTGAAG 1 cut(s) 701
AfaI GTAC 3 cut(s) 340, 566, 658
AgsI TTSAA 2 cut(s) 358, 373
AjnI CCWGG 1 cut(s) 345
AluBI AGCT 2 cut(s) 184, 679
AluI AGCT 2 cut(s) 184, 679
Aor13HI TCCGGA 1 cut(s) 86
AoxI GGCC 2 cut(s) 25, 42
ApeKI GCWGC 3 cut(s) 107, 118, 237
ApoI RAATTY 1 cut(s) 37
ArsI GACNNNNNNTTYG 2 cut(s) 317, 349
AseI ATTAAT 1 cut(s) 440
Asp700I GAANNNNTTC 1 cut(s) 498
Asp718I GGTACC 1 cut(s) 338
AspA2I CCTAGG 1 cut(s) 461
AspLEI GCGC 1 cut(s) 622
AspS9I GGNCC 2 cut(s) 95, 457
AsuHPI GGTGA 3 cut(s) 200, 331, 701
AvaII GGWCC 2 cut(s) 95, 457
AvrII CCTAGG 1 cut(s) 461
BalI TGGCCA 1 cut(s) 44
BanI GGYRCC 1 cut(s) 338
BbvCI CCTCAGC 1 cut(s) 309
BbvI GCAGC 3 cut(s) 119, 130, 249
BciT130I CCWGG 1 cut(s) 347
BclI TGATCA 1 cut(s) 523
BfaI CTAG 3 cut(s) 29, 99, 462
BglII AGATCT 2 cut(s) 134, 262
BisI GCNGC 3 cut(s) 108, 119, 238
BlnI CCTAGG 1 cut(s) 461
BlpI GCTNAGC 1 cut(s) 233
BlsI GCNGC 3 cut(s) 109, 120, 239
Bme1390I CCNGG 1 cut(s) 347
Bme18I GGWCC 2 cut(s) 95, 457
BmgT120I GGNCC 2 cut(s) 95, 457
BmiI GGNNCC 3 cut(s) 340, 458, 459
BmrFI CCNGG 1 cut(s) 347
BmsI GCATC 3 cut(s) 131, 399, 596
Bpu10I CCTNAGC 1 cut(s) 309
Bpu1102I GCTNAGC 1 cut(s) 233
BpuEI CTTGAG 1 cut(s) 419
BsaJI CCNNGG 1 cut(s) 461
BsaWI WCCGGW 1 cut(s) 86
Bse1I ACTGG 2 cut(s) 213, 517
Bse3DI GCAATG 2 cut(s) 71, 173
BseAI TCCGGA 1 cut(s) 86
BseBI CCWGG 1 cut(s) 347
BseDI CCNNGG 1 cut(s) 461
BseGI GGATG 3 cut(s) 146, 277, 286
BseMI GCAATG 2 cut(s) 71, 173
BseMII CTCAG 2 cut(s) 224, 300
BseNI ACTGG 2 cut(s) 213, 517
BseXI GCAGC 3 cut(s) 119, 130, 249
BsgI GTGCAG 1 cut(s) 572
BshFI GGCC 2 cut(s) 27, 44
BshNI GGYRCC 1 cut(s) 338
BsiSI CCGG 1 cut(s) 87
BslFI GGGAC 1 cut(s) 470
BsmFI GGGAC 1 cut(s) 470
BsnI GGCC 2 cut(s) 27, 44
Bsp13I TCCGGA 1 cut(s) 86
Bsp1407I TGTACA 1 cut(s) 564
Bsp143I GATC 6 cut(s) 134, 154, 262, 523, 643, 707
Bsp1720I GCTNAGC 1 cut(s) 233
BspANI GGCC 2 cut(s) 27, 44
BspCNI CTCAG 2 cut(s) 225, 301
BspEI TCCGGA 1 cut(s) 86
BspLI GGNNCC 3 cut(s) 340, 458, 459
BspT107I GGYRCC 1 cut(s) 338
BsrDI GCAATG 2 cut(s) 71, 173
BsrGI TGTACA 1 cut(s) 564
BsrI ACTGG 2 cut(s) 213, 517
BssECI CCNNGG 1 cut(s) 461
BssMI GATC 6 cut(s) 134, 154, 262, 523, 643, 707
BssT1I CCWWGG 1 cut(s) 461
Bst2UI CCWGG 1 cut(s) 347
Bst4CI ACNGT 4 cut(s) 329, 550, 562, 717
BstAUI TGTACA 1 cut(s) 564
BstC8I GCNNGC 3 cut(s) 251, 392, 555
BstDEI CTNAG 3 cut(s) 233, 309, 383
BstEII GGTNACC 1 cut(s) 349
BstF5I GGATG 3 cut(s) 146, 277, 286
BstHHI GCGC 1 cut(s) 622
BstKTI GATC 6 cut(s) 137, 157, 265, 526, 646, 710
BstMBI GATC 6 cut(s) 134, 154, 262, 523, 643, 707
BstMWI GCNNNNNNNGC 2 cut(s) 229, 246
BstNI CCWGG 1 cut(s) 347
BstPI GGTNACC 1 cut(s) 349
BstSCI CCNGG 1 cut(s) 345
BstV1I GCAGC 3 cut(s) 119, 130, 249
BstX2I RGATCY 2 cut(s) 134, 262
BstYI RGATCY 2 cut(s) 134, 262
BsuRI GGCC 2 cut(s) 27, 44
BtsCI GGATG 3 cut(s) 146, 277, 286
BtsIMutI CAGTG 2 cut(s) 334, 510
Cac8I GCNNGC 3 cut(s) 251, 392, 555
CfoI GCGC 1 cut(s) 622
Cfr13I GGNCC 2 cut(s) 95, 457
CsiI ACCWGGT 1 cut(s) 345
Csp6I GTAC 3 cut(s) 339, 565, 657
CviAII CATG 3 cut(s) 53, 527, 647
CviJI RGCY 8 cut(s) 27, 44, 51, 184, 212, 232, 363, 679
CviKI_1 RGCY 8 cut(s) 27, 44, 51, 184, 212, 232, 363, 679
CviQI GTAC 3 cut(s) 339, 565, 657
DdeI CTNAG 3 cut(s) 233, 309, 383
DpnI GATC 6 cut(s) 136, 156, 264, 525, 645, 709
DpnII GATC 6 cut(s) 134, 154, 262, 523, 643, 707
EaeI YGGCCR 1 cut(s) 42
Eco130I CCWWGG 1 cut(s) 461
Eco147I AGGCCT 1 cut(s) 27
Eco47I GGWCC 2 cut(s) 95, 457
Eco57I CTGAAG 1 cut(s) 701
Eco91I GGTNACC 1 cut(s) 349
EcoO109I RGGNCCY 1 cut(s) 457
EcoO65I GGTNACC 1 cut(s) 349
EcoRII CCWGG 1 cut(s) 345
EcoT14I CCWWGG 1 cut(s) 461
ErhI CCWWGG 1 cut(s) 461
FaeI CATG 3 cut(s) 56, 530, 650
FaqI GGGAC 1 cut(s) 470
FatI CATG 3 cut(s) 52, 526, 646
FauNDI CATATG 1 cut(s) 378
FbaI TGATCA 1 cut(s) 523
Fnu4HI GCNGC 3 cut(s) 108, 119, 238
FokI GGATG 3 cut(s) 153, 273, 284
Fsp4HI GCNGC 3 cut(s) 108, 119, 238
FspBI CTAG 3 cut(s) 29, 99, 462
GlaI GCGC 1 cut(s) 621
GluI GCNGC 3 cut(s) 108, 119, 238
HaeIII GGCC 2 cut(s) 27, 44
HapII CCGG 1 cut(s) 87
HhaI GCGC 1 cut(s) 622
Hin1II CATG 3 cut(s) 56, 530, 650
Hin6I GCGC 1 cut(s) 620
HinP1I GCGC 1 cut(s) 620
HinfI GANTC 1 cut(s) 293
HpaII CCGG 1 cut(s) 87
HphI GGTGA 3 cut(s) 200, 331, 701
Hpy166II GTNNAC 1 cut(s) 565
Hpy188I TCNGA 4 cut(s) 154, 159, 627, 643
Hpy188III TCNNGA 5 cut(s) 87, 138, 260, 290, 455
Hpy8I GTNNAC 1 cut(s) 565
HpyAV CCTTC 3 cut(s) 533, 645, 679
HpyCH4III ACNGT 4 cut(s) 329, 550, 562, 717
HpyCH4V TGCA 9 cut(s) 68, 76, 118, 144, 178, 332, 412, 553, 705
HpyF10VI GCNNNNNNNGC 2 cut(s) 229, 246
HpyF3I CTNAG 3 cut(s) 233, 309, 383
Hsp92II CATG 3 cut(s) 56, 530, 650
HspAI GCGC 1 cut(s) 620
KflI GGGWCCC 1 cut(s) 457
Kpn2I TCCGGA 1 cut(s) 86
KpnI GGTACC 1 cut(s) 342
Ksp22I TGATCA 1 cut(s) 523
Kzo9I GATC 6 cut(s) 134, 154, 262, 523, 643, 707
Lsp1109I GCAGC 3 cut(s) 119, 130, 249
LweI GCATC 3 cut(s) 131, 399, 596
MabI ACCWGGT 1 cut(s) 345
MaeI CTAG 3 cut(s) 29, 99, 462
MaeIII GTNAC 4 cut(s) 10, 169, 349, 689
MalI GATC 6 cut(s) 136, 156, 264, 525, 645, 709
MboI GATC 6 cut(s) 134, 154, 262, 523, 643, 707
MboII GAAGA 3 cut(s) 488, 555, 694
MflI RGATCY 2 cut(s) 134, 262
MlsI TGGCCA 1 cut(s) 44
MluCI AATT 5 cut(s) 37, 77, 254, 314, 437
MluNI TGGCCA 1 cut(s) 44
MmeI TCCRAC 1 cut(s) 249
MnlI CCTC 3 cut(s) 153, 304, 394
Mox20I TGGCCA 1 cut(s) 44
MroI TCCGGA 1 cut(s) 86
MroXI GAANNNNTTC 1 cut(s) 498
MscI TGGCCA 1 cut(s) 44
MseI TTAA 2 cut(s) 440, 518
Msp20I TGGCCA 1 cut(s) 44
MspI CCGG 1 cut(s) 87
MspR9I CCNGG 1 cut(s) 347
MvaI CCWGG 1 cut(s) 347
MwoI GCNNNNNNNGC 2 cut(s) 229, 246
NdeI CATATG 1 cut(s) 378
NdeII GATC 6 cut(s) 134, 154, 262, 523, 643, 707
NlaIII CATG 3 cut(s) 56, 530, 650
NlaIV GGNNCC 3 cut(s) 340, 458, 459
NmuCI GTSAC 1 cut(s) 689
PceI AGGCCT 1 cut(s) 27
PdmI GAANNNNTTC 1 cut(s) 498
PfeI GAWTC 1 cut(s) 293
PkrI GCNGC 3 cut(s) 109, 120, 239
PpuMI RGGWCCY 1 cut(s) 457
PshBI ATTAAT 1 cut(s) 440
Psp5II RGGWCCY 1 cut(s) 457
Psp6I CCWGG 1 cut(s) 345
PspEI GGTNACC 1 cut(s) 349
PspGI CCWGG 1 cut(s) 345
PspN4I GGNNCC 3 cut(s) 340, 458, 459
PspPI GGNCC 2 cut(s) 95, 457
PspPPI RGGWCCY 1 cut(s) 457
PsuI RGATCY 2 cut(s) 134, 262
RsaI GTAC 3 cut(s) 340, 566, 658
RsaNI GTAC 3 cut(s) 339, 565, 657
SaqAI TTAA 2 cut(s) 440, 518
SatI GCNGC 3 cut(s) 108, 119, 238
Sau3AI GATC 6 cut(s) 134, 154, 262, 523, 643, 707
Sau96I GGNCC 2 cut(s) 95, 457
ScrFI CCNGG 1 cut(s) 347
SetI ASST 6 cut(s) 100, 186, 198, 348, 356, 681
SexAI ACCWGGT 1 cut(s) 345
SfaNI GCATC 3 cut(s) 131, 399, 596
SinI GGWCC 2 cut(s) 95, 457
SmlI CTYRAG 1 cut(s) 398
SmoI CTYRAG 1 cut(s) 398
Sse9I AATT 5 cut(s) 37, 77, 254, 314, 437
SseBI AGGCCT 1 cut(s) 27
SspMI CTAG 3 cut(s) 29, 99, 462
StuI AGGCCT 1 cut(s) 27
StyD4I CCNGG 1 cut(s) 345
StyI CCWWGG 1 cut(s) 461
TaaI ACNGT 4 cut(s) 329, 550, 562, 717
TaqI TCGA 1 cut(s) 259
TasI AATT 5 cut(s) 37, 77, 254, 314, 437
TatI WGTACW 1 cut(s) 564
TfiI GAWTC 1 cut(s) 293
Tru1I TTAA 2 cut(s) 440, 518
Tru9I TTAA 2 cut(s) 440, 518
TscAI CASTG 2 cut(s) 334, 517
TseFI GTSAC 1 cut(s) 689
TseI GCWGC 3 cut(s) 107, 118, 237
Tsp45I GTSAC 1 cut(s) 689
TspDTI ATGAA 5 cut(s) 69, 70, 489, 491, 507
TspRI CASTG 2 cut(s) 334, 517
VpaK11BI GGWCC 2 cut(s) 95, 457
VspI ATTAAT 1 cut(s) 440
XapI RAATTY 1 cut(s) 37
XmaJI CCTAGG 1 cut(s) 461
XmnI GAANNNNTTC 1 cut(s) 498
XspI CTAG 3 cut(s) 29, 99, 462
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.