Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2A

Orthogroup ID

OG0002341

Physical Location & Seq

Genomic Coordinates Forward (+)

2051291 .. 2051970

Gene Structure 680 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2AG029300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 567 bp

ATGGTAGATGTTACAAACCAAGTAGGCCTAGACATAAATTTGGCCATAAGCCATGAATGGTTATTTGCACCTTTGCAATTCATTTCCAGACTTGGACCTAGAAAGGCAGCACATTTGCAGCAGTGGTTGGTCAGATCTGGATGCACAATCTCTAATCGGAGGGAGTTTGTTACATTGCACCAGCTCGGTCAAAAGGTGTATGATAATGCAGTCAGTTTCTTGCGTGTTCAGCTGACCAGCAGGAGCGGCAAGCAATTTCGTGATCTGTTGGATGATACAAGAATACATCCAGAACCCTATATTCTTGCTGAGGAATTGGTGAAAGTCGTTTATGATGGTAACGATGCTCTAGAGTGCATTTGGTACCGACCTGGTTACCTTGAAAGGCTTGACATTGAAGCATATGCTAGAAGCAAGCAACTTGAGGATAAGATGCAAACTTTGTATGATATAAGGAAAGAATTAATACAGGGTTTTCGGGACCCGAGGAAAGACTATGAAGAACCAAGTGTTAATGTACTTTTTCATCTGCTCACTGGTTTAACTGATGATGCCGGCCATTTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000018 GO:0000785 GO:0000988 GO:0000990 GO:0000991 GO:0002637 GO:0002682 GO:0002694 GO:0002697 GO:0002700 GO:0002703 GO:0002706 GO:0002712 GO:0002819 GO:0002822 GO:0002889 GO:0003006 GO:0003674 GO:0003682 GO:0003700 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005694 GO:0005737 GO:0005829 GO:0005911 GO:0006139 GO:0006325 GO:0006338 GO:0006342 GO:0006351 GO:0006354 GO:0006355 GO:0006357 GO:0006366 GO:0006368 GO:0006725 GO:0006807 GO:0006996 GO:0007275 GO:0008023 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009299 GO:0009506 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0009890 GO:0009891 GO:0009892 GO:0009893 GO:0009987 GO:0010154 GO:0010467 GO:0010468 GO:0010556 GO:0010557 GO:0010558 GO:0010604 GO:0010605 GO:0010628 GO:0010629 GO:0010639 GO:0010793 GO:0016043 GO:0016070 GO:0016071 GO:0016458 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0030054 GO:0031056 GO:0031057 GO:0031060 GO:0031061 GO:0031323 GO:0031324 GO:0031325 GO:0031326 GO:0031327 GO:0031328 GO:0031399 GO:0031400 GO:0031491 GO:0031974 GO:0031981 GO:0032239 GO:0032268 GO:0032269 GO:0032386 GO:0032501 GO:0032502 GO:0032774 GO:0032784 GO:0032786 GO:0032879 GO:0032880 GO:0032968 GO:0032991 GO:0033043 GO:0033044 GO:0033157 GO:0034243 GO:0034641 GO:0034645 GO:0034654 GO:0034728 GO:0035327 GO:0040029 GO:0042393 GO:0042789 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043933 GO:0043954 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044444 GO:0044446 GO:0044451 GO:0044464 GO:0044877 GO:0045191 GO:0045595 GO:0045814 GO:0045892 GO:0045893 GO:0045934 GO:0045935 GO:0045944 GO:0046483 GO:0046822 GO:0046825 GO:0046831 GO:0048316 GO:0048518 GO:0048519 GO:0048522 GO:0048523 GO:0048583 GO:0048608 GO:0048731 GO:0048856 GO:0050684 GO:0050776 GO:0050789 GO:0050793 GO:0050794 GO:0050864 GO:0050865 GO:0051049 GO:0051052 GO:0051128 GO:0051129 GO:0051147 GO:0051171 GO:0051172 GO:0051173 GO:0051223 GO:0051239 GO:0051246 GO:0051248 GO:0051249 GO:0051252 GO:0051253 GO:0051254 GO:0051276 GO:0055044 GO:0060255 GO:0060341 GO:0061085 GO:0061086 GO:0061458 GO:0065007 GO:0070013 GO:0070201 GO:0070827 GO:0071704 GO:0071824 GO:0071840 GO:0080090 GO:0090087 GO:0090304 GO:0097659 GO:0140110 GO:1901360 GO:1901362 GO:1901576 GO:1902275 GO:1902679 GO:1902680 GO:1903311 GO:1903506 GO:1903507 GO:1903508 GO:1903827 GO:1905268 GO:2000026 GO:2000112 GO:2000113 GO:2000197 GO:2001141 GO:2001251

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DLD HHH_7 HTH_44 SH2_2 SPT6_acidic YqgF

Protein Analysis

188

Amino Acids

21.86

Weight (kDa)

5.86

Isoelectric Point (pI)

43.42

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HHH_7	PF14635	1 - 76	1.6e-15	Helix-hairpin-helix motif
HHH_9	PF17674	89 - 163	4e-08	HHH domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002341)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G63210
fragaria_vesca	FvH4_1g02481 FvH4_1g02810
rosa_chinensis	RchiOBHm_Chr2g0087471 RchiOBHm_Chr2g0087481 RchiOBHm_Chr2g0087901 RchiOBHm_Chr2g0087911 RchiOBHm_Chr2g0087921 RchiOBHm_Chr2g0087931
rosa_laevigata	RLG00000015871 RLG00000015872 RLG00000015911 RLG00000015912
rosa_multiflora	Rmu_sc0006064.1_g000017 Rmu_sc0008385.1_g000023 Rmu_sc0013931.1_g000008 Rmu_sc0014136.1_g000012
rosa_roxburghii	Rroxscaffold_2G00153120 Rroxscaffold_2G00153130
rosa_rugosa	Rorug01G0475800.1 Rorug01G0479400 Rorug01G0479700
rosa_samantha	Rh2AG029200 Rh2AG029300 Rh2AG034100 Rh2AG034200 Rh2AG034500 Rh2BG029400 Rh2BG033300 Rh2BG033400 Rh2BG033500 Rh2CG029400 Rh2CG034000 Rh2CG034200 Rh2CG034500 Rh2DG029200 Rh2DG033700 Rh2DG033900 Rh2DG034200
rosa_wichuraiana	Rw2G002320 Rw2G002680 Rw2G002690

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	363
AccB1I	GGYRCC	1 cut(s)	363
AccBSI	CCGCTC	1 cut(s)	246
AciI	CCGC	1 cut(s)	246
AcoI	YGGCCR	2 cut(s)	42, 556
AcsI	RAATTY	1 cut(s)	37
AfaI	GTAC	2 cut(s)	365, 519
AgsI	TTSAA	2 cut(s)	383, 398
AjnI	CCWGG	1 cut(s)	370
AluBI	AGCT	2 cut(s)	184, 232
AluI	AGCT	2 cut(s)	184, 232
Ama87I	CYCGRG	1 cut(s)	484
AoxI	GGCC	3 cut(s)	25, 42, 556
ApeKI	GCWGC	2 cut(s)	107, 118
ApoI	RAATTY	1 cut(s)	37
AseI	ATTAAT	1 cut(s)	464
Asp718I	GGTACC	1 cut(s)	363
AspS9I	GGNCC	2 cut(s)	95, 481
AsuHPI	GGTGA	1 cut(s)	331
AvaI	CYCGRG	1 cut(s)	484
AvaII	GGWCC	2 cut(s)	95, 481
BalI	TGGCCA	1 cut(s)	44
BanI	GGYRCC	1 cut(s)	363
BbvCI	CCTCAGC	1 cut(s)	309
BbvI	GCAGC	2 cut(s)	119, 130
BccI	CCATC	1 cut(s)	329
BciT130I	CCWGG	1 cut(s)	372
BfaI	CTAG	4 cut(s)	29, 99, 350, 408
BglII	AGATCT	1 cut(s)	134
BisI	GCNGC	3 cut(s)	108, 119, 247
BlsI	GCNGC	3 cut(s)	109, 120, 248
Bme1390I	CCNGG	1 cut(s)	372
Bme18I	GGWCC	2 cut(s)	95, 481
BmeT110I	CYCGRG	1 cut(s)	484
BmgT120I	GGNCC	2 cut(s)	95, 481
BmiI	GGNNCC	3 cut(s)	365, 482, 483
BmrFI	CCNGG	1 cut(s)	372
BmsI	GCATC	4 cut(s)	131, 334, 423, 541
Bpu10I	CCTNAGC	1 cut(s)	309
BpuEI	CTTGAG	1 cut(s)	443
BsaJI	CCNNGG	1 cut(s)	485
Bse118I	RCCGGY	1 cut(s)	554
Bse1I	ACTGG	1 cut(s)	541
Bse3DI	GCAATG	1 cut(s)	173
BseBI	CCWGG	1 cut(s)	372
BseDI	CCNNGG	1 cut(s)	485
BseGI	GGATG	3 cut(s)	146, 277, 286
BseMI	GCAATG	1 cut(s)	173
BseMII	CTCAG	1 cut(s)	300
BseNI	ACTGG	1 cut(s)	541
BseXI	GCAGC	2 cut(s)	119, 130
BshFI	GGCC	3 cut(s)	27, 44, 558
BshNI	GGYRCC	1 cut(s)	363
BsiHKCI	CYCGRG	1 cut(s)	484
BsiSI	CCGG	1 cut(s)	555
BslFI	GGGAC	1 cut(s)	494
BsmFI	GGGAC	1 cut(s)	494
BsnI	GGCC	3 cut(s)	27, 44, 558
BsoBI	CYCGRG	1 cut(s)	484
Bsp143I	GATC	2 cut(s)	134, 262
BspACI	CCGC	1 cut(s)	246
BspANI	GGCC	3 cut(s)	27, 44, 558
BspCNI	CTCAG	1 cut(s)	301
BspLI	GGNNCC	3 cut(s)	365, 482, 483
BspT107I	GGYRCC	1 cut(s)	363
BsrBI	CCGCTC	1 cut(s)	246
BsrDI	GCAATG	1 cut(s)	173
BsrFI	RCCGGY	1 cut(s)	554
BsrI	ACTGG	1 cut(s)	541
BssAI	RCCGGY	1 cut(s)	554
BssECI	CCNNGG	1 cut(s)	485
BssMI	GATC	2 cut(s)	134, 262
Bst2UI	CCWGG	1 cut(s)	372
BstC8I	GCNNGC	3 cut(s)	251, 416, 556
BstDEI	CTNAG	1 cut(s)	309
BstEII	GGTNACC	1 cut(s)	374
BstF5I	GGATG	3 cut(s)	146, 277, 286
BstKTI	GATC	2 cut(s)	137, 265
BstMBI	GATC	2 cut(s)	134, 262
BstMWI	GCNNNNNNNGC	2 cut(s)	229, 246
BstNI	CCWGG	1 cut(s)	372
BstPI	GGTNACC	1 cut(s)	374
BstSCI	CCNGG	1 cut(s)	370
BstV1I	GCAGC	2 cut(s)	119, 130
BstX2I	RGATCY	1 cut(s)	134
BstYI	RGATCY	1 cut(s)	134
BsuRI	GGCC	3 cut(s)	27, 44, 558
BtsCI	GGATG	3 cut(s)	146, 277, 286
BtsI	GCAGTG	1 cut(s)	128
BtsIMutI	CAGTG	2 cut(s)	128, 534
Cac8I	GCNNGC	3 cut(s)	251, 416, 556
Cfr10I	RCCGGY	1 cut(s)	554
Cfr13I	GGNCC	2 cut(s)	95, 481
CsiI	ACCWGGT	1 cut(s)	370
Csp6I	GTAC	2 cut(s)	364, 518
CviAII	CATG	1 cut(s)	53
CviJI	RGCY	7 cut(s)	27, 44, 51, 184, 232, 388, 558
CviKI_1	RGCY	7 cut(s)	27, 44, 51, 184, 232, 388, 558
CviQI	GTAC	2 cut(s)	364, 518
DdeI	CTNAG	1 cut(s)	309
DpnI	GATC	2 cut(s)	136, 264
DpnII	GATC	2 cut(s)	134, 262
EaeI	YGGCCR	2 cut(s)	42, 556
Eco147I	AGGCCT	1 cut(s)	27
Eco47I	GGWCC	2 cut(s)	95, 481
Eco88I	CYCGRG	1 cut(s)	484
Eco91I	GGTNACC	1 cut(s)	374
EcoO109I	RGGNCCY	1 cut(s)	481
EcoO65I	GGTNACC	1 cut(s)	374
EcoRII	CCWGG	1 cut(s)	370
FaeI	CATG	1 cut(s)	56
FaqI	GGGAC	1 cut(s)	494
FatI	CATG	1 cut(s)	52
FauNDI	CATATG	1 cut(s)	403
Fnu4HI	GCNGC	3 cut(s)	108, 119, 247
FokI	GGATG	3 cut(s)	153, 273, 284
Fsp4HI	GCNGC	3 cut(s)	108, 119, 247
FspBI	CTAG	4 cut(s)	29, 99, 350, 408
GluI	GCNGC	3 cut(s)	108, 119, 247
HaeIII	GGCC	3 cut(s)	27, 44, 558
HapII	CCGG	1 cut(s)	555
Hin1II	CATG	1 cut(s)	56
HpaII	CCGG	1 cut(s)	555
HphI	GGTGA	1 cut(s)	331
Hpy188I	TCNGA	2 cut(s)	134, 159
Hpy188III	TCNNGA	6 cut(s)	87, 138, 260, 290, 350, 479
HpyCH4V	TGCA	8 cut(s)	68, 76, 118, 144, 178, 209, 357, 436
HpyF10VI	GCNNNNNNNGC	2 cut(s)	229, 246
HpyF3I	CTNAG	1 cut(s)	309
Hsp92II	CATG	1 cut(s)	56
KflI	GGGWCCC	1 cut(s)	481
KpnI	GGTACC	1 cut(s)	367
KroI	GCCGGC	1 cut(s)	554
KroNI	GCCGGC	1 cut(s)	556
Kzo9I	GATC	2 cut(s)	134, 262
LmnI	GCTCC	1 cut(s)	243
Lsp1109I	GCAGC	2 cut(s)	119, 130
LweI	GCATC	4 cut(s)	131, 334, 423, 541
MabI	ACCWGGT	1 cut(s)	370
MaeI	CTAG	4 cut(s)	29, 99, 350, 408
MaeIII	GTNAC	4 cut(s)	10, 169, 338, 374
MalI	GATC	2 cut(s)	136, 264
MbiI	CCGCTC	1 cut(s)	246
MboI	GATC	2 cut(s)	134, 262
MboII	GAAGA	1 cut(s)	512
MflI	RGATCY	1 cut(s)	134
MlsI	TGGCCA	1 cut(s)	44
MluCI	AATT	5 cut(s)	37, 77, 254, 314, 461
MluNI	TGGCCA	1 cut(s)	44
MmeI	TCCRAC	1 cut(s)	249
MnlI	CCTC	4 cut(s)	153, 304, 418, 480
Mox20I	TGGCCA	1 cut(s)	44
MroNI	GCCGGC	1 cut(s)	554
MscI	TGGCCA	1 cut(s)	44
MseI	TTAA	3 cut(s)	464, 513, 542
Msp20I	TGGCCA	1 cut(s)	44
MspA1I	CMGCKG	1 cut(s)	232
MspI	CCGG	1 cut(s)	555
MspR9I	CCNGG	1 cut(s)	372
MvaI	CCWGG	1 cut(s)	372
MwoI	GCNNNNNNNGC	2 cut(s)	229, 246
NaeI	GCCGGC	1 cut(s)	556
NdeI	CATATG	1 cut(s)	403
NdeII	GATC	2 cut(s)	134, 262
NgoMIV	GCCGGC	1 cut(s)	554
NlaIII	CATG	1 cut(s)	56
NlaIV	GGNNCC	3 cut(s)	365, 482, 483
PceI	AGGCCT	1 cut(s)	27
PdiI	GCCGGC	1 cut(s)	556
PkrI	GCNGC	3 cut(s)	109, 120, 248
PpuMI	RGGWCCY	1 cut(s)	481
PshBI	ATTAAT	1 cut(s)	464
Psp5II	RGGWCCY	1 cut(s)	481
Psp6I	CCWGG	1 cut(s)	370
PspEI	GGTNACC	1 cut(s)	374
PspGI	CCWGG	1 cut(s)	370
PspN4I	GGNNCC	3 cut(s)	365, 482, 483
PspPI	GGNCC	2 cut(s)	95, 481
PspPPI	RGGWCCY	1 cut(s)	481
PsuI	RGATCY	1 cut(s)	134
PvuII	CAGCTG	1 cut(s)	232
RsaI	GTAC	2 cut(s)	365, 519
RsaNI	GTAC	2 cut(s)	364, 518
SaqAI	TTAA	3 cut(s)	464, 513, 542
SatI	GCNGC	3 cut(s)	108, 119, 247
Sau3AI	GATC	2 cut(s)	134, 262
Sau96I	GGNCC	2 cut(s)	95, 481
ScrFI	CCNGG	1 cut(s)	372
SetI	ASST	7 cut(s)	73, 100, 186, 198, 234, 373, 381
SexAI	ACCWGGT	1 cut(s)	370
SfaNI	GCATC	4 cut(s)	131, 334, 423, 541
SinI	GGWCC	2 cut(s)	95, 481
SmlI	CTYRAG	1 cut(s)	422
SmoI	CTYRAG	1 cut(s)	422
Sse9I	AATT	5 cut(s)	37, 77, 254, 314, 461
SseBI	AGGCCT	1 cut(s)	27
SsiI	CCGC	1 cut(s)	246
SspMI	CTAG	4 cut(s)	29, 99, 350, 408
StuI	AGGCCT	1 cut(s)	27
StyD4I	CCNGG	1 cut(s)	370
TaqII	GACCGA	1 cut(s)	176
TasI	AATT	5 cut(s)	37, 77, 254, 314, 461
TatI	WGTACW	1 cut(s)	517
TauI	GCSGC	1 cut(s)	249
Tru1I	TTAA	3 cut(s)	464, 513, 542
Tru9I	TTAA	3 cut(s)	464, 513, 542
TscAI	CASTG	2 cut(s)	128, 541
TseI	GCWGC	2 cut(s)	107, 118
TspDTI	ATGAA	4 cut(s)	69, 70, 513, 515
TspRI	CASTG	2 cut(s)	128, 541
VpaK11BI	GGWCC	2 cut(s)	95, 481
VspI	ATTAAT	1 cut(s)	464
XapI	RAATTY	1 cut(s)	37
XbaI	TCTAGA	1 cut(s)	349
XspI	CTAG	4 cut(s)	29, 99, 350, 408

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.