AT1G63830

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
1
OG0001223
Physical Location & Seq
Forward (+)
23685093 .. 23687374
2282 bp
Loading structure...
UTR
Exon/CDS
Intron
AT1G63830.2

Sequence Viewer

Length: 699 bp
ATGGCGGCGTCGCAAGATAAGTTGGATAAGATGAAACTTAGGCAAGATTACCGGAATTTATGGCACTCCGATCTCATGGGCACCGTCACCGCCGACACTCCCTATTGCTGCATCTCGTGTCTGTGTGGACCTTGTGTGTCATACATGCTTCGGAGAAGAGCACTTTACAATGACATGTCAAGGTATACTTGCTGTGCTGGATATATGCCCTGTAGTGGAAGGTGTGGAGAAAGCAAATGTCCTCAACTTTGCCTTGCCACTGAGGTCTTCCTTTGCTTCGGAAACTCTGTGGCCTCTACCCGCTTTCTTCTGCAGGATGAATTCAACATCCAGACAACACAATGCGACAATTGCATAATTGGATTTATGTTCTGCCTCAGCCAAGTTGCTTGCATATTCTCTATAGTTGCTTGCATTGTTGGTAGTGATGAACTTTCCGAGGCTTCTCAGATACTCTCTTGCTGTGCTGATATGGTCTACTGCACGGTCTGCGCATGTATGCAGACACAACACAAACTTGAGATGGACAAAAGAGATGGAGTGTTTGGATCGCAGCCAATGGGTGTGCCACCAGCTCAGCAGATGTCTCGTTTTGATCAACCTGTCCCTCCTCCAGTCGGATACCCTCAGTCCTATCCACCGCCTGCTCAAGGCTACCCTCCTGCATCTTACCCGCCTCCCGGTTATCCTCAGCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

232

Amino Acids

25.67

Weight (kDa)

5.55

Isoelectric Point (pI)

73.14

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 493
AccB1I GGYRCC 1 cut(s) 80
AccI GTMKAC 2 cut(s) 185, 477
AciI CCGC 5 cut(s) 5, 90, 301, 641, 674
AclWI GGATC 1 cut(s) 556
AcsI RAATTY 2 cut(s) 55, 320
AcyI GRCGYC 1 cut(s) 8
AfiI CCNNNNNNNGG 4 cut(s) 215, 617, 650, 680
AflIII ACRYGT 1 cut(s) 174
AgsI TTSAA 1 cut(s) 325
AluBI AGCT 1 cut(s) 575
AluI AGCT 1 cut(s) 575
Alw21I GWGCWC 1 cut(s) 163
Alw26I GTCTC 1 cut(s) 591
AlwI GGATC 1 cut(s) 556
AoxI GGCC 1 cut(s) 291
ApeKI GCWGC 2 cut(s) 108, 553
ApoI RAATTY 2 cut(s) 55, 320
AspLEI GCGC 1 cut(s) 494
AspS9I GGNCC 1 cut(s) 128
AsuC2I CCSGG 1 cut(s) 681
AsuHPI GGTGA 1 cut(s) 79
AvaII GGWCC 1 cut(s) 128
BaeGI GKGCMC 1 cut(s) 83
BanI GGYRCC 1 cut(s) 80
BauI CACGAG 1 cut(s) 115
BbsI GAAGAC 1 cut(s) 259
Bbv12I GWGCWC 1 cut(s) 163
BbvCI CCTCAGC 2 cut(s) 377, 690
BbvI GCAGC 2 cut(s) 95, 565
BccI CCATC 2 cut(s) 517, 530
BcgI CGANNNNNNTGC 2 cut(s) 569, 603
BciVI GTATCC 1 cut(s) 614
BclI TGATCA 1 cut(s) 595
BcnI CCSGG 1 cut(s) 681
BcoDI GTCTC 1 cut(s) 591
BfmI CTRYAG 3 cut(s) 211, 311, 402
BfuI GTATCC 1 cut(s) 614
BisI GCNGC 3 cut(s) 6, 109, 554
BlpI GCTNAGC 1 cut(s) 576
BlsI GCNGC 3 cut(s) 7, 110, 555
Bme1390I CCNGG 1 cut(s) 681
Bme18I GGWCC 1 cut(s) 128
BmgT120I GGNCC 1 cut(s) 128
BmiI GGNNCC 1 cut(s) 82
BmrFI CCNGG 1 cut(s) 681
BmsI GCATC 2 cut(s) 120, 674
BpiI GAAGAC 1 cut(s) 259
BpmI CTGGAG 1 cut(s) 597
Bpu10I CCTNAGC 2 cut(s) 377, 690
Bpu1102I GCTNAGC 1 cut(s) 576
BpuEI CTTGAG 2 cut(s) 539, 633
BpuMI CCSGG 1 cut(s) 681
BsaHI GRCGYC 1 cut(s) 8
BsaJI CCNNGG 1 cut(s) 438
BsaWI WCCGGW 1 cut(s) 51
Bsc4I CCNNNNNNNGG 4 cut(s) 215, 617, 650, 680
Bse1I ACTGG 1 cut(s) 614
BseDI CCNNGG 1 cut(s) 438
BseGI GGATG 2 cut(s) 322, 327
BseLI CCNNNNNNNGG 4 cut(s) 215, 617, 650, 680
BseMII CTCAG 5 cut(s) 252, 391, 461, 590, 641
BseNI ACTGG 1 cut(s) 614
BseRI GAGGAG 1 cut(s) 600
BseSI GKGCMC 1 cut(s) 83
BseXI GCAGC 2 cut(s) 95, 565
BsgI GTGCAG 1 cut(s) 466
BshFI GGCC 1 cut(s) 293
BshNI GGYRCC 1 cut(s) 80
BsiHKAI GWGCWC 1 cut(s) 163
BsiSI CCGG 2 cut(s) 52, 681
BslFI GGGAC 1 cut(s) 590
BslI CCNNNNNNNGG 4 cut(s) 215, 617, 650, 680
BsmAI GTCTC 1 cut(s) 591
BsmFI GGGAC 1 cut(s) 590
BsnI GGCC 1 cut(s) 293
Bsp1286I GDGCHC 2 cut(s) 83, 163
Bsp143I GATC 3 cut(s) 70, 548, 595
Bsp1720I GCTNAGC 1 cut(s) 576
BspACI CCGC 5 cut(s) 5, 90, 301, 641, 674
BspANI GGCC 1 cut(s) 293
BspCNI CTCAG 5 cut(s) 253, 390, 460, 589, 640
BspLI GGNNCC 1 cut(s) 82
BspMAI CTGCAG 1 cut(s) 315
BspPI GGATC 1 cut(s) 556
BspQI GCTCTTC 1 cut(s) 151
BspT107I GGYRCC 1 cut(s) 80
BsrI ACTGG 1 cut(s) 614
BssECI CCNNGG 1 cut(s) 438
BssMI GATC 3 cut(s) 70, 548, 595
BssNAI GTATAC 1 cut(s) 186
BssNI GRCGYC 1 cut(s) 8
BssSI CACGAG 1 cut(s) 115
Bst1107I GTATAC 1 cut(s) 186
Bst2BI CACGAG 1 cut(s) 115
Bst4CI ACNGT 2 cut(s) 85, 487
Bst6I CTCTTC 1 cut(s) 151
BstACI GRCGYC 1 cut(s) 8
BstAPI GCANNNNNTGC 1 cut(s) 489
BstC8I GCNNGC 3 cut(s) 391, 412, 645
BstDEI CTNAG 7 cut(s) 38, 261, 377, 447, 576, 627, 690
BstENI CCTNNNNNAGG 1 cut(s) 648
BstF5I GGATG 2 cut(s) 322, 327
BstHHI GCGC 1 cut(s) 494
BstKTI GATC 3 cut(s) 73, 551, 598
BstMAI GTCTC 1 cut(s) 591
BstMBI GATC 3 cut(s) 70, 548, 595
BstMWI GCNNNNNNNGC 2 cut(s) 351, 489
BstNSI RCATGY 3 cut(s) 148, 178, 498
BstSCI CCNGG 1 cut(s) 679
BstSFI CTRYAG 3 cut(s) 211, 311, 402
BstSLI GKGCMC 1 cut(s) 83
BstV1I GCAGC 2 cut(s) 95, 565
BstV2I GAAGAC 1 cut(s) 259
BstZ17I GTATAC 1 cut(s) 186
BsuI GTATCC 1 cut(s) 614
BsuRI GGCC 1 cut(s) 293
BtsCI GGATG 2 cut(s) 322, 327
BtsIMutI CAGTG 1 cut(s) 258
Cac8I GCNNGC 3 cut(s) 391, 412, 645
CfoI GCGC 1 cut(s) 494
Cfr13I GGNCC 1 cut(s) 128
CviAII CATG 4 cut(s) 76, 145, 175, 495
CviJI RGCY 6 cut(s) 293, 381, 443, 556, 575, 654
CviKI_1 RGCY 6 cut(s) 293, 381, 443, 556, 575, 654
DdeI CTNAG 7 cut(s) 38, 261, 377, 447, 576, 627, 690
DpnI GATC 3 cut(s) 72, 550, 597
DpnII GATC 3 cut(s) 70, 548, 595
Eam1104I CTCTTC 1 cut(s) 151
EarI CTCTTC 1 cut(s) 151
Eco47I GGWCC 1 cut(s) 128
EcoNI CCTNNNNNAGG 1 cut(s) 648
EcoRI GAATTC 1 cut(s) 320
FaeI CATG 4 cut(s) 79, 148, 178, 498
FalI AAGNNNNNCTT 2 cut(s) 172, 204
FaqI GGGAC 1 cut(s) 590
FatI CATG 4 cut(s) 75, 144, 174, 494
FauI CCCGC 2 cut(s) 308, 681
FbaI TGATCA 1 cut(s) 595
FblI GTMKAC 2 cut(s) 185, 477
Fnu4HI GCNGC 3 cut(s) 6, 109, 554
FokI GGATG 2 cut(s) 314, 329
Fsp4HI GCNGC 3 cut(s) 6, 109, 554
FspI TGCGCA 1 cut(s) 493
GlaI GCGC 1 cut(s) 493
GluI GCNGC 3 cut(s) 6, 109, 554
GsuI CTGGAG 1 cut(s) 597
HaeIII GGCC 1 cut(s) 293
HapII CCGG 2 cut(s) 52, 681
HhaI GCGC 1 cut(s) 494
Hin1I GRCGYC 1 cut(s) 8
Hin1II CATG 4 cut(s) 79, 148, 178, 498
Hin6I GCGC 1 cut(s) 492
HinP1I GCGC 1 cut(s) 492
HpaII CCGG 2 cut(s) 52, 681
HphI GGTGA 1 cut(s) 79
Hpy166II GTNNAC 3 cut(s) 128, 186, 478
Hpy188I TCNGA 6 cut(s) 70, 153, 281, 439, 450, 620
Hpy188III TCNNGA 1 cut(s) 331
Hpy8I GTNNAC 3 cut(s) 128, 186, 478
Hpy99I CGWCG 1 cut(s) 13
HpyAV CCTTC 1 cut(s) 213
HpyCH4III ACNGT 2 cut(s) 85, 487
HpyCH4V TGCA 8 cut(s) 111, 313, 354, 393, 414, 483, 502, 665
HpyF10VI GCNNNNNNNGC 2 cut(s) 351, 489
HpyF3I CTNAG 7 cut(s) 38, 261, 377, 447, 576, 627, 690
Hsp92I GRCGYC 1 cut(s) 8
Hsp92II CATG 4 cut(s) 79, 148, 178, 498
HspAI GCGC 1 cut(s) 492
Ksp22I TGATCA 1 cut(s) 595
Kzo9I GATC 3 cut(s) 70, 548, 595
LguI GCTCTTC 1 cut(s) 151
Lsp1109I GCAGC 2 cut(s) 95, 565
LweI GCATC 2 cut(s) 120, 674
MaeIII GTNAC 1 cut(s) 85
MalI GATC 3 cut(s) 72, 550, 597
MboI GATC 3 cut(s) 70, 548, 595
MboII GAAGA 3 cut(s) 168, 259, 299
MfeI CAATTG 1 cut(s) 349
MhlI GDGCHC 2 cut(s) 83, 163
MluCI AATT 4 cut(s) 55, 320, 349, 357
MmeI TCCRAC 1 cut(s) 598
MseI TTAA 1 cut(s) 697
MspI CCGG 2 cut(s) 52, 681
MspR9I CCNGG 1 cut(s) 681
MunI CAATTG 1 cut(s) 349
MwoI GCNNNNNNNGC 2 cut(s) 351, 489
NciI CCSGG 1 cut(s) 681
NdeII GATC 3 cut(s) 70, 548, 595
NlaIII CATG 4 cut(s) 79, 148, 178, 498
NlaIV GGNNCC 1 cut(s) 82
NmuCI GTSAC 1 cut(s) 85
NsbI TGCGCA 1 cut(s) 493
NspI RCATGY 3 cut(s) 148, 178, 498
PciI ACATGT 1 cut(s) 174
PciSI GCTCTTC 1 cut(s) 151
PkrI GCNGC 3 cut(s) 7, 110, 555
PscI ACATGT 1 cut(s) 174
PspN4I GGNNCC 1 cut(s) 82
PspPI GGNCC 1 cut(s) 128
PstI CTGCAG 1 cut(s) 315
SapI GCTCTTC 1 cut(s) 151
SaqAI TTAA 1 cut(s) 697
SatI GCNGC 3 cut(s) 6, 109, 554
Sau3AI GATC 3 cut(s) 70, 548, 595
Sau96I GGNCC 1 cut(s) 128
ScrFI CCNGG 1 cut(s) 681
SduI GDGCHC 2 cut(s) 83, 163
SetI ASST 6 cut(s) 133, 185, 224, 267, 577, 604
SfaNI GCATC 2 cut(s) 120, 674
SfcI CTRYAG 3 cut(s) 211, 311, 402
SinI GGWCC 1 cut(s) 128
SmlI CTYRAG 2 cut(s) 518, 648
SmoI CTYRAG 2 cut(s) 518, 648
Sse9I AATT 4 cut(s) 55, 320, 349, 357
SsiI CCGC 5 cut(s) 5, 90, 301, 641, 674
StyD4I CCNGG 1 cut(s) 679
TaaI ACNGT 2 cut(s) 85, 487
TasI AATT 4 cut(s) 55, 320, 349, 357
TauI GCSGC 1 cut(s) 8
Tru1I TTAA 1 cut(s) 697
Tru9I TTAA 1 cut(s) 697
TscAI CASTG 1 cut(s) 265
TseFI GTSAC 1 cut(s) 85
TseI GCWGC 2 cut(s) 108, 553
Tsp45I GTSAC 1 cut(s) 85
TspDTI ATGAA 3 cut(s) 47, 333, 444
TspRI CASTG 1 cut(s) 265
VpaK11BI GGWCC 1 cut(s) 128
XagI CCTNNNNNAGG 1 cut(s) 648
XapI RAATTY 2 cut(s) 55, 320
XceI RCATGY 3 cut(s) 148, 178, 498
XmiI GTMKAC 2 cut(s) 185, 477
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.